91903511dc5db6e8c360ffa330d483b1f638bbca refs/heads/2_5_1_rna_merge 96f10f96255b4e9bb88601ce01adbf5faf16544c refs/heads/JAL-1260_droldan dbabbe48a455467de19b953d098a9cd943f9c133 refs/heads/JAL-1375_ncbiclient 245c9609dc00df56054b35e76aff48a2dda0be50 refs/heads/JAL-1550_intermine-sequence-annotation-client 67473776389cd0a6024aa3e401819e503970082c refs/heads/JAL-1562_help-documentation-system-refactoring 44f7d3f329e2607a05b7b8b177edb4432e526502 refs/heads/JAL-1601-direct-jpred4-rest-service e760e4772fc65a111dbb91358281dd182b53b3d0 refs/heads/JAL-2739_2.10.2b1 bf3afd12ede3a18ddb4843a100b075285c9fa92c refs/heads/JAL-3253-applet-113cc13-2019.08.28-js-optimizations 6200addf078b7f7ace90597dc056dafc7fc602c1 refs/heads/JAL-3253-applet-SwingJS-omnibus b56e5883749812e770d2337f66d397ae14075612 refs/heads/JAL-3253-applet-test b87512d6e28a2a93ea2f08dcfbee320856c5c8de refs/heads/JAL-3253_applet_omnibus-BH c565b24f5a866bad10eda5050e6e942819d687ac refs/heads/JAL-3315_getdown_1_8_6_update c843dbd309a13ac1b576d76b33e2a0a5d3a227bc refs/heads/JAL-3368_JavaScript_colors f300e30df117ff4be7d1df5c781161efd0285e5f refs/heads/JAL-3437_load_project 171426bbaca3ec0ff275e54981c917cbca2f012a refs/heads/JAL-3866_RNAalifold-slivka-client dc2e21ef0092f0e79c1837fc76a81710bc74e3a0 refs/heads/JAL-3878_web_services_overhaul 52eaee0814ad21a395b6e76bfb05511b4fc766ae refs/heads/JAL-3878_ws-overhaul-3 cf04d0714f5d7686f47201d42d63df80b4ebf10d refs/heads/JAL-4152-typed-singleton-provider ff3fcbec0f1f62d99eeaa96c7e312cb426da43f5 refs/heads/JAL-4154-platform-specific-constants f244cdf6267fd446edc039d49428fa8eabcca42c refs/heads/JAL-429_phylip-file-support 52750109fdb60b7b8d936d4624a8a39d5a722fb2 refs/heads/JAL-4474_jalview.ps1_not_working e2b7673f7157b2c8cfa45ba774b115c9b3670946 refs/heads/JalScape/JAL-1332 54ba1050fb7ef47d3e58f0c0ed52d3e4629ba5f4 refs/heads/Jalview-JS/20190123 521951df7d677995b8e142fd0a3c3061df5d2781 refs/heads/Jalview-JS/JAL-3253-applet dbbc1013d01d733adc88e7a22ce8a230ae8178ca refs/heads/Jalview-JS/JAL-3253-applet-JAL-3445_support_for_BSML 1f8ac77d7dd4280fa4349e63c5b4ef0c1dfaf9b7 refs/heads/Jalview-JS/JAL-3253-applet-JAL-3453-TestNG-Desktop-getInstanceOnly c844fbda900f095b00a72be43ebf2a068b5050bc refs/heads/Jalview-JS/JAL-3253-applet-SwingJS-3.2.9.v1e 45cdb111f9dec2c4a6b50045e3138b23929f1581 refs/heads/Jalview-JS/JAL-3560-bh-temp 1fb9dd2acf85b18385a90376c991555b7421a0a4 refs/heads/Jalview-JS/JAL-3560_bob_temp 549a0f817a1a3addc064cbb3d8f4fe8d51058c3c refs/heads/Jalview-JS/JAL-3563-sync-TestNG-test-bob cfa118f7383e300235afb04ec0e093bf4e50b928 refs/heads/Jalview-JS/demo 650bca3ef095d09a5354240e7d2bafb6fc524122 refs/heads/Jalview-JS/develop ce270fef5a3e00b57f0b2077800796c3654ac68f refs/heads/Jalview-JS/develop-JAL-3559 f3213c0763f9a1d1b911ad5d64074b971f5b8e8b refs/heads/Jalview-JS/develop-updated-gradle 7702e684eb32a5719f4da2a99b09319c077af07f refs/heads/Jalview-JS/develop.JAL-3445-BSML-reader 32c41447d98ef79a9e82c4947d8776f3b0220323 refs/heads/Jalview-JS/develop.JAL-3446.SequenceFeatureAsync c0f918667cb58c5fdd6bc344db7cd50dd5cf5d43 refs/heads/Jalview-JS/develop.JAL-3446.ctrlDown 0aa289427134d46212cb8fd7e207f714ec0282f3 refs/heads/Jalview-JS/develop_j2s_v3_2_9_j11 0210a246bf503771b40265bda0aeae305ec201ba refs/heads/Jalview-JS/gradle-minimal 012a1d2bc849431872a6fd57253d31941e59cc93 refs/heads/Jalview-JS/gradle_with_goomph 9b0bf59c743413e08a272dae04d7347f1163e90b refs/heads/Jalview-JS/gradle_with_inline_eclipse 59191d7e340d86fc7a294a09fc4e2940bfbef535 refs/heads/Jalview-JS/jim/JAL-3253-JAL-3418 e30f4e079986a86c88f3510ff5c77f4293d8e8fa refs/heads/Jalview-JS/update_java2script 9cd3ff27d8a47b2e8b1f3be9ff07d47ea9bc6fd1 refs/heads/Jalview-jJS/JAL-3253-applet-JAL-3436 a18c4df2d9f819b7b38006bcac3e23c14fcd95e5 refs/heads/Pre_R29_develop ef0377ec8e57164363e74c33d6ede31f85e8ccf7 refs/heads/RNAalifold 447594fbb352e9c1bf1c687edcdda896856b4c0f refs/heads/Release_2_3_BuildFix 0ec09c85f867015b71e69f1f3782bb4db96f64f4 refs/heads/Release_2_4_branch f81941152d7100b7cba6c21a9b53f7e09911855c refs/heads/Release_2_5_Branch 4230b657b444c3667e9c8cc7974730681130ebae refs/heads/Release_2_6_Branch 2d348a0c5220b0f108d8c029a6503dd8f751b0ff refs/heads/Release_2_7_Branch 6ca7cf3ba5134086da3fae5397e5404c6f7b0a58 refs/heads/Release_2_8_1_Branch_i18n f326c11fa50ef0ab83a31b0d0f9ddb1e66d4ae10 refs/heads/Release_2_8_2_Branch_i18n dac9672dba85c9bb2d7b7313e015d7561f252fe1 refs/heads/Release_2_8_2b1_Branch e6dfb718d73b9398701aba29e8c8ffb20bad2b26 refs/heads/Release_2_9_0b1_Branch cdb598b011f9ab8b33fda92f917c2f96a5e1e577 refs/heads/Release_2_9_Branch 7622ff8a4deb1dfdf960c38883421089c1c0a314 refs/heads/Tcoffee_JAL-1065 c4dd9fbd848d3ffaa88134fb06bed794d69bc6f3 refs/heads/VamJalview dce490b7c7c8f2c2021f7dd93ba126af0c6eaf43 refs/heads/alpha/JAL-3066_Jalview_212_slivka-integration b4a563ef7c7bde6be17d5dba0ef6927b2de555df refs/heads/alpha/JAL-3362_Jalview_212_alpha e7e676ca075c5b2832be98b4544364e5d6adc4c1 refs/heads/alpha/JAL-3899_deuniquify_refactor e46258ec9c1d56a23167aa2ba0ff4778a418d0b5 refs/heads/alpha/Jalview_212_test_merged_buildgradle e3c3367f89785a5cff5fb3bd419c92ccb4ac13ea refs/heads/alpha/merge_212_JalviewJS_2112 06f52ec5772e4345648f174d0213ac15c058d168 refs/heads/bug/JAL-1644_Finder-logic-improvement d71500a42803f307500c16250b40f0fc31e74aad refs/heads/bug/JAL-1712annotationsWithFlanking b06dd5c7f0f1a8d7b75fdf165b7d990681f2e2e5 refs/heads/bug/JAL-2023_cdsProjectError 1e103edb54d2b8c206bde10399e488426c4b651d refs/heads/bug/JAL-2339helpBullets 1173ed15c801a5f16abcb12e05ff913628593639 refs/heads/bug/JAL-247autoIdWidthSeqMarker 4b41478373a5c4b90a106af7351ace054f476c67 refs/heads/bug/JAL-2541_JAL-2823_cutAndRelocateFeatures_needs_merge_from_211_release b37c5048ef9edc96ad514bd1d05932721a1afa2e refs/heads/bug/JAL-2791selectVisibleFeatures 8d455fca935d22c72ac32afc39633eb485da9d38 refs/heads/bug/JAL-2848resetColoursAmendFeatures 94202c5a8e9ddccf471659d63025f6174811df7f refs/heads/bug/JAL-2876byLabelThreshold 6750995f850bda7402e9b69bd4cb55713cdf9d4d refs/heads/bug/JAL-2907stockholmGapChar ae84c1dc2deb8aa70c9d6ef90b2f56e152a5790c refs/heads/bug/JAL-3003epsWithSelection 00e9d8ee88dbf637ff3bac98c1e0b038625f7437 refs/heads/bug/JAL-3059groupBorder c56d96f3544cd3b4e0a7d36a8eba04f767eaf57a refs/heads/bug/JAL-3083cancelAnnotationColour 7d30c031f338d9866e2564d86dfa746423d65f40 refs/heads/bug/JAL-3088_RNA_secondary_structure_annotation_final-ending-solo-brace_arrow_points_the_wrong_way bb4e715f6a6681100b7b43562211cf690118ee8a refs/heads/bug/JAL-3178nonposFeatureExport_take2 14d6afdf47982b050cab51431d01588620723e8c refs/heads/bug/JAL-3183groupColourOverwritten e0fead054f258a000aad3f6a053d8a2aaeb92aa0 refs/heads/bug/JAL-3184restoreGroupVisibility 63cead20b09743e899a22cb89f1c09e4d41cc8c0 refs/heads/bug/JAL-3195idResolution 46242d05bbdd0ad5c77230436b189d904e303f35 refs/heads/bug/JAL-3201groupClustal cd578c5f56a88269077e547ed22f3b5f4bd033cb refs/heads/bug/JAL-3202zerosInProfile 5bad8435fd8ef2481b42814d876c12d4f52f0620 refs/heads/bug/JAL-3212columnSelectionWithHidden 904dafed30e4da63436e5303851c735a88ea1a4f refs/heads/bug/JAL-3215hydroColours 90a413a8cf57d937a8529651a2c688ba3fe4784c refs/heads/bug/JAL-3235sortPropertiesJava9 f29373e1a61c59573c822f1476c13b054264796a refs/heads/bug/JAL-3235sortPropertiesJava9-2 cbdf701c27664c48d6b8cbb21c95c9994c5e97b6 refs/heads/bug/JAL-3288_override_all_JInternalFrame_with_Classic_JInternalFrame 4abe263f327773456c984373a8387e4d8c3be5a9 refs/heads/bug/JAL-3365_failing_per_sequence_ss_tests 1dc587cd6751c722615c0da18e06a2ac5f7276f3 refs/heads/bug/JAL-3473_SpinnerNumberModel_causing_IllegalArgumentException 81fa75d3be89d74c209d9c8d83c70a53329cb587 refs/heads/bug/JAL-3487-splash-JS 4ffa5161216adc501b127408f1596f507b9c7b92 refs/heads/bug/JAL-3489mapChainsFromFile 5574cf40bdcaf7ca99ba0611ed76824e7fb12cd9 refs/heads/bug/JAL-3490findSpanHiddenGaps 75b8a1f5fc598fce03b4304c5e165c2ef6855389 refs/heads/bug/JAL-3502wrappedScale 476a45a4f966195404f7b118c6e25f0bbc7f3bfd refs/heads/bug/JAL-360_JAL-3984_F2_stops_working_after_some_dialogs 4c5a5acfdbbca27883389d46b52c0e4cc5881b30 refs/heads/bug/JAL-3613emblCDSTracking 54770bcd7db9bcac27cf211246e029660d6a3f15 refs/heads/bug/JAL-3648graphDragRelease 0c85e43a68ad2de5318b6e3f09bd743b7933a890 refs/heads/bug/JAL-3702_Drag_and_drop_miscalculation_in_linux_HiDPI 548ca3e0a4a049bf0c0743efcdc6bdb2a0c6112a refs/heads/bug/JAL-3705saveProteinId 62c6e630bd24574d279417dd6b4ee921b5537131 refs/heads/bug/JAL-3706virtualStopCodon 8b4fb6dae17a6f34412b1ca6953e9923a9dc7c19 refs/heads/bug/JAL-3725overlappingVirtualFeatures 23e240e0e174b189d6561a5cb5c5f8dfaf3ad83b refs/heads/bug/JAL-3744_read_gzip_file_in_jalviewjs 7addf95ae5d9d395bf535ee843238add6497f96c refs/heads/bug/JAL-3751_revisited e35961e7ec71dc750e181300f4b099508ed82ad5 refs/heads/bug/JAL-3751overlappingCDS 4512cdb02fc0660c87e3bacf489f299623c3d33b refs/heads/bug/JAL-3761_locateInFromTo a26b3456e3547547d052f1c5437255bd8690dd7d refs/heads/bug/JAL-3774_splitFrameFinder f90b9284525e774e2d2f53811954235513f20cbc refs/heads/bug/JAL-3779setGroupProperties 818739945b29ef80bae395f0341055b844608ad0 refs/heads/bug/JAL-3788_autoOverviewClustal b6bd3fa646b6728cd59c8d0de91270ab6c70f86f refs/heads/bug/JAL-3807_jpred-with-slivka 7b64243974c397a651fab57090dba203b332e406 refs/heads/bug/JAL-3809_ws_params_dialog_fix 37713035750521ec4a22eba221e810465623b0c0 refs/heads/bug/JAL-3810_annotation_ws_stopping_abruptly 0b438477b16470202bddfecb54e0587036b37202 refs/heads/bug/JAL-3849_aacon-parameters c7a72b43db4b03f2146e1cd7c41ac2e59fac1e0c refs/heads/bug/JAL-3972_VAqua_for_Java11 e4c2a9483a41740a85c95ffbf014e23f9afe79f6 refs/heads/bug/JAL-4041_no_3dbeacons_when_no_uniprotseq 68d58f205b96505c393bcf699db43dd586901233 refs/heads/bug/JAL-4059_update_swingJS_for_JalviewJS_2_11_2_and_2_11_3 360177d2c0f4550de2be90b5f9536b991123e16f refs/heads/bug/JAL-4059_update_swingJS_for_JalviewJS_2_11_4_0 c1f6935d26ee154d9c1769fe0ae24107d7431412 refs/heads/bug/JAL-4072_zip_slip_vulnerability_in_getdown 6c89ed59f96a34f51b1cb06592c75583986295ea refs/heads/bug/JAL-4225_rnaalifold_structure_not_recognised_as_such f4865ea9ed6053ddd96a6157b124642488153a21 refs/heads/bug/JAL-4229_varna_helix_mapping_offby1 d2858ba11088212f756b4a2d09eb20f32fa9874c refs/heads/bug/JAL-4235_gradle_task_jalviewjsTranspile_does_not_fail_on_eclipse_error 80d58b8bdf6ca4cc38af10df2fcc9c05eb21dd00 refs/heads/bug/JAL-4238_PAEs_not_being_shown_in_JalviewJS df2cec95b7f3cc69f976c495c1cbc3fab18eb351 refs/heads/bug/JAL-4290_headless_alignment_export_with_structure_annotations_doesnt_include_secondary_structure_and_temperature_factor 72e63582d51fbaa0cc5a3963abc96814f984039b refs/heads/bug/JAL-4313-make-visible-annot-fix d40eec66396ecc2590d76e24110d94da5e59f6c9 refs/heads/bug/JAL-4344_structureimage_cl_arg_only_creating_background_colour_square 65d394e306a91a2b0a7d7490615dede3d7b9a085 refs/heads/bug/JAL-4353_cannot_output_multiple_different_structure_images_for_one_alignment 0041b370235a60faada5dde14f7fd7e0cd881e4d refs/heads/bug/JAL-4369_uniprot_in_jalviewJS 5366f4b373ba3fbfd8fa5d591e79d34f04381296 refs/heads/bug/JAL-4374_missing_colon_when_using_jalview_scheme_with_host_and_port 2cb06b103be32e40c74a0510789ea073adc73ca3 refs/heads/bug/JAL-4375_annotation_not_redrawn_correctly_when_scrolling_left-right_via_trackpad_in_wrap_mode f194e85e7f9cd2062989b1487b2a294c5faa0986 refs/heads/bug/JAL-4375_annotation_not_redrawn_correctly_when_scrolling_left-right_via_trackpad_in_wrap_mode_2114_needs_splitting a187bcd7ecb0cf1b43af64450a5e0b0d35c87027 refs/heads/bug/JAL-4389-web-services-prefs-panel ee3e6523e7e1e274b56cf2d29f50e029e199a993 refs/heads/bug/JAL-4437_one_channel_build_cant_launch_builds_from_other_channel 2eb618d01fe32876a15108b267a26d9eeba221ac refs/heads/bug/JAL-4456_cannot_change_double_click_settings_for_links 72a0f1e4f4a4dd3e87e6b968fb704b2f61d145d9 refs/heads/bug/JAL-4477_unmapped_filename_characters 85dead08e22e1ed61738f045b58349c18b8131b2 refs/heads/bug/JAL-4482_gradle_task_linkCheck_fails 4aa30fa9dd69fe01111355dda8b970a6ad9fca4c refs/heads/bug/JAL-4492_gradle_build_not_excluding_classes eb26f5aa7a1961c0e1fb5e14f12e880a651b38fa refs/heads/cherry-pick/JAL-3691_to_2.11.2_localeSafeFileImport e99c06994dd1e8e0d1740b7eaa89cd2c63861e89 refs/heads/cherrypicks/JAL-3660_JAL-3561_JAL-3662_cli_outputformat 80edaa84d6d9beac9f0d2c71b50b7b56fd393427 refs/heads/codereviews/JAL-1990_IProgressIndicator_jalview.structure 1dad9dc2f7ff8466ad11d8c945aaa9140748ef8a refs/heads/develop 747167089ecf8d6afc70d417f5a20352e029bd95 refs/heads/development/JAL-3878_ws_overhaul_3_merged_with_2_12_Merged ce63feae60026b5815c18b133447d0f265d4cf8a refs/heads/development/Release_2_12_Branch 52af9a567a4c6009f24b8a9de6e3b43c8d718658 refs/heads/experiment/JAL-4386_JAL-4435_with_HSB_colours cfb973824e06936f2f3b2c4cf9605bd687896cf4 refs/heads/experiment/JAL-4386_experimental_string_to_colour_scheme_methods 069ab787ab3f2de53f5b24f8af3ea078ff52671b refs/heads/feature/JAL-1260_genbank_embl_flatfile_import_reloaded 94833478359db02471755ad0e8ee3be05c3393fe refs/heads/feature/JAL-2087ensemblSpeciesAssist 7af63d41af61d31af8d8790d1483ed474050bdf2 refs/heads/feature/JAL-2422ChimeraX 88bc41a8d340988625001b2828625c1a668cadd9 refs/heads/feature/JAL-2611 822ee0479afcc500c72f16b7fa972dc99c8bf5d5 refs/heads/feature/JAL-2674take2 dc3dd2e76d340b0577259c4e9d64372a1c126aee refs/heads/feature/JAL-2738GeneLocus 916c073172d5e374f7375ec718420455472dfcb3 refs/heads/feature/JAL-2873ensemblSpeciesQuery 6f516287c0c9fa3e3f13c8e0c9b95dd99045d22a refs/heads/feature/JAL-2909bamfiles 429bbdae3d5229ec1b92ec59f4b5a25bcfcf13f8 refs/heads/feature/JAL-2909bamfiles_features 9e66ffdd391a2467fd6821abf9f8f0ca66e5a18d refs/heads/feature/JAL-3081customAnnOrder 812efb59846c842cd8d3ac16690cf6d762d88579 refs/heads/feature/JAL-3117_overviewFocusAlignment 87cac19ea40aecf1ddaa23dac531531d7f29b481 refs/heads/feature/JAL-3148structureColourSchemes dff427de0ee64e80b4e67b092159fc081df73fcd refs/heads/feature/JAL-3187viewstyleFlags 58b30fcf2ee02b59666655a5bdf99d6e660b2e70 refs/heads/feature/JAL-3190jalviewjsChimera 712030864564b9fbd1405d2e3d8cdb67481b3cac refs/heads/feature/JAL-3194_create_launcher_with_dynamic_memory_heap_setting 879ce4991c4ab61bfe995995e23286e98e5fb955 refs/heads/feature/JAL-3251biotypedMappings ede65e4bb4c184f93f794c1d3aa05521355e4bb9 refs/heads/feature/JAL-3364splitFrameImage 2043c7f197d747c97536289f5fdad72065961dfa refs/heads/feature/JAL-3390hideUnmappedStructure 4faf17681ecb23497054f58147ea7201dfb4c031 refs/heads/feature/JAL-3400viewChainsMenu 6b3a4a1b636be96f2bc46a8a454dd6ce3d280021 refs/heads/feature/JAL-3442colourCaching e9b3b4078647e40fcdb23d5f0814c05954cf730f refs/heads/feature/JAL-3443findColorAsInt f501ebf56839e4115d9d48d20a6c936856dc0e37 refs/heads/feature/JAL-3469clinvarVCF 136f41377900e9e70d9d083664e898a255af74dd refs/heads/feature/JAL-3481_conservation_gap_threshold_preferences acc51b96b52db925f7ab71342c6024ef0e8f4b5b refs/heads/feature/JAL-3499featuresFileMotifs b08aa323c3e2fcacbe28b003d2d2a3c027d19b31 refs/heads/feature/JAL-3515-slivka-preferences 2ac00907dd4b7777add99046c57c0945d2d2f653 refs/heads/feature/JAL-3576intervalStore_1_2 71c5a29a58e5505aaf7d63a8c9f1bea3ae93d629 refs/heads/feature/JAL-3686_slivka_client_js_update e23c809d6cd203187c5f65efd03741ec4cb637be refs/heads/feature/JAL-3690_callback-based-web-services f76e980eed78557acf0749bd390a1aa8c4625d65 refs/heads/feature/JAL-3719_gapColourInAlignmentView 45e607ef30f3e6cb3db68ae26c33be650c99833c refs/heads/feature/JAL-3719_gapColourInAlignmentView_2.11.2 fc07a043c80a393765160ce7e672e9fdb4719599 refs/heads/feature/JAL-3730ensemblPingRetries e239a325b544039d7b2c210492f4706f66ba57c0 refs/heads/feature/JAL-3851_prototype_comms_for_jbrowse2 f3fdf76ef87665cb4d0ff812283128dd3294b870 refs/heads/feature/JAL-3851_rest_api_for_genome_browser_updated_with_develop 9a3fbb958e7b83e448f34eaadd32a9667bd444ca refs/heads/feature/JAL-3874_add_source_jars_to_eclipse 5d60cda87940311cfff2679e6f0e96890d3e1fd6 refs/heads/feature/JAL-3954-ebi-phmmer 631b4913d708d2ccc3c1ad6b1650f507e7008601 refs/heads/feature/JAL-3982_mouseover_highlighting_viaJAL-3860 1a2a4ce555a75c3c0cf2929ee346ff13e883c3c6 refs/heads/feature/JAL-4159_pasimap_JAL-4423_alt_msa_source 0c90355de2854b4ba6f30c1c162f9cb0c712351a refs/heads/feature/JAL-4227_Rfam2020_sslines a323332f89e44b7a3b8b1aee27ce6e12c22f44ca refs/heads/feature/JAL-4386_JAL-4435_coloured_lines_for_providers 39291a3fa3b81f3a82111b067ffd51c87b14fe8d refs/heads/feature/JAL-4386_JAL-4435_reformat_node_labels 03ba07a5429bb19cc81bbfd44d240e002481877b refs/heads/feature/JAL-4386_JAL-4435_trees_from_annotations_on_alignment_2114_update 2940d9c01539dd10962eb201ec7f0cb0eb905be9 refs/heads/feature/JAL-4386_calculate_tree_using_secondary_structure_annotation f3e21a7b9556252fd1ede2c8323a64320842db79 refs/heads/feature/JAL-4476_reformat_ss_consensus_annotation_labels 3efc24bc7b7855ff135fa96e35ab1004eaeb4f5e refs/heads/feature/r2_11_2/JAL-3808_gff2_exonerate 6a495a81e764c82f9fdfb6b3f990b962a5b85286 refs/heads/features/JAL-1499 4a85628075aa27923821a910758c9b9d69cb1708 refs/heads/features/JAL-1499_MEGA 8b392a6c4542bc83a1267a168b296876d48dfb86 refs/heads/features/JAL-1550_intermine-sequence-annotation-client 5117f0d57f8ee5a531a630677ae0e1fdaeb725d9 refs/heads/features/JAL-1601_jpred4rest fa49359cbca59fe30b2bc13283510b99afe4317e refs/heads/features/JAL-161_JAL-4173_nhx_tags_in_stockholm 0bec946ff94726b35e8b0c8508c42d3cec59ee37 refs/heads/features/JAL-1641_JSON b6e04973b3b7b0ea9c7f75cd88e496aef082366d refs/heads/features/JAL-1641_JSON-File-format 14b9c2563a9c79ac462bf700192e386249ba062c refs/heads/features/JAL-1807java2Script b09158307712372752e22a0e766b3a5b9b9e15df refs/heads/features/JAL-1953_Archeopteryx_with_Jalview_2_11_2 c6492a740f2fbd1a2611f669e6a618335a7858b2 refs/heads/features/JAL-1965_JAL-753_JAL-1427_relaxedIdMatch 55ab1d6dc5b9b6ae410f5e7709e5560988e60ecf refs/heads/features/JAL-1978_msagrid 3e98c1348b037f0972367245a524f182029a9686 refs/heads/features/JAL-2040_JAL-2137_phyre2 baa11f60d8ed1ce99b054e11cc0fecc586f8e92e refs/heads/features/JAL-2055alternateFeatureColours f2b03e9fecf41886ebf5f747fd4be02edf042bee refs/heads/features/JAL-2094_colourInterface de6f16e01ddb7846dc67f8f7a71ed6862d7aa986 refs/heads/features/JAL-2103 b8cd52fe7bed59130e5b080acfd42c3ef2effdbb refs/heads/features/JAL-2136_phyre2_integration c51dbe7933683b64548f5353e67561d2b5e377f7 refs/heads/features/JAL-2136_phyre2_integration_updated b342c421914723ac1b3403280cb8bc346011326e refs/heads/features/JAL-2253ensemblGenomes 9a4238fddebd328b1c0ffb94d089fdffebc4f184 refs/heads/features/JAL-2351jmolExchange e4496f5b27c5a01a1cc494653bd3f9f49080d544 refs/heads/features/JAL-2476dropFiles f063821ed0be9c1581af74643a1aa5798731af65 refs/heads/features/JAL-250_hideredundantseqs 70f98ab214fefd664892e8c8ec44811d820a802d refs/heads/features/JAL-2909_bamImport2_11 0f216582318763932198af826f95c11cf3d3cd38 refs/heads/features/JAL-2909_bamImport_2_11_2 6a05eb3f55d97e685f0c723822384633d5636778 refs/heads/features/JAL-3010ontologyFeatureSettings 25008f6fd7150baf5626e878affebcd111bcf695 refs/heads/features/JAL-3020attributeValuePrompting c0a7ff7df2df7483f96428206ed40fac728a81f5 refs/heads/features/JAL-3085_gnupdf 3459a8a691cb22508d7067f240b7254e588e77d3 refs/heads/features/JAL-3417_sdppred_calcs 4e2f6c0857eff90e30d4b64540ce4b7265053bc9 refs/heads/features/JAL-345_selectFromFind c605461a165b7d3ac4af8e0c4d7928f469ffe06b refs/heads/features/JAL-34_comparing_msas c86b3bf029c0a54ffc24e5f8c4a4275b5db7e144 refs/heads/features/JAL-3638_jumptonextindel a59756286e7f58d7ccd639b149bbeeecd7409995 refs/heads/features/JAL-3641_phredfromfastq 8dbe9206561daac950b4154da519d7aad4cfeaee refs/heads/features/JAL-3914_modelqualityscores_v2115 0a00266f602cde16fddd1b297279cf9b2c13a708 refs/heads/features/JAL-3982_JAL-3860_mouseover_genome_to_3dstructure_for_2_11_4 29f7e24d4261af7af91dd5d1192fc5640997e754 refs/heads/features/JAL-4071_visibleFeaturesCounter 7fd29d4a8927f1c5e59aab981531ab0f303b0214 refs/heads/features/JAL-4219_extended_fasta_rna_ss 0a648fa578eef83e9f17a1d581aba8fcf9a393da refs/heads/features/JAL-4220_showSymbolsBelowConsensusThresholdAsGaps c1aa510c36a5c12a76bfebcaa57157f3d82e8d76 refs/heads/features/JAL-4366_foldseek_3di_viewing f6be36d7152321642e41db9d8bdbd2580431541e refs/heads/features/JAL-4489_cluster_pca_and_pasimap 30bbab8b2e223cc7a28c69556092d405c8dc48f7 refs/heads/features/JAL-4489_clustering_and_pca_pasimap_views 4dc159c9f47284ecfd253840dded4772af7be954 refs/heads/features/JAL-629_with_threads_NOT_PASSING_TESTS 39f46f6adedc1b0a1553e9dd3133582aa63ff4de refs/heads/features/JAL-666_exportoverview 48a66195bf4aee8b2c479d3bbbf4c1fb8b824f5a refs/heads/features/JAL-722alignmentProperties 878897fd12216b10828d6ff387f5450029d8b017 refs/heads/features/JAL-728alternateQuality 95ceead3cb4ea5aa5260e1fd4ab53658b64866e1 refs/heads/features/JAL-845linkedProteinDnaEditing b04bbad58a8dd34fe773dfeb758e71e64606ed9e refs/heads/features/JAL-845splitPaneMergeDevelop 4490c246e02057d0e539233c2ef348ca561c8688 refs/heads/features/hmmer 7717b24f1e894ad268121890c479848c53df64b0 refs/heads/features/hmmer_statistics e0fd9965a1ffacf4ac034a79e7cb5f7e898ff69f refs/heads/features/mchmmer 1903e771d3dae79e9a57fcc1147efd37e8a51421 refs/heads/features/mchmmer_merge_JAL-1950 7d6652012194b95cbe89cf96c990450f68e277f5 refs/heads/features/r2_11_2/JAL-3922_jmolSelectionHighlighting 79362a91b9005d5391ee9f1621cb7c09f4c5b179 refs/heads/features/r_2_11_2_JAL-819_undeleteAutoAnnotation 57af23f63ef752b8530bd7eae9722d04fd537368 refs/heads/hack/JAL-1617_workaround 759d755e2a451b2167b2df8345887379a7f648d7 refs/heads/improvement/JAL-3289_new_launch_screens 99f12fbfb7363175e43de3cb4c48750e71bb5023 refs/heads/improvement/JAL-3384_Redirect_stdout_and_stdin_to_files 3ade835a89217d9714e278334ff3eaaef9272311 refs/heads/improvement/JAL-3393_Improved_DMG_background_image_beta_strand 0b165691fd3a7bb1d22438350157691a5d0bc2f9 refs/heads/improvement/JAL-3393_make_DMG_background_image_relative_path_in_DS_Store 432842b2544071500b05978f4e0e177f6819a0cb refs/heads/improvement/JAL-3416_FlatLaf_3.2.1 7496d38ebe9d2c3ddd1d2f1bacf95c2381b63264 refs/heads/improvement/JAL-3438_eclipse_java_code_formatting_as_a_gradle_task 4b4f8f64b569ca51b56062fa34be5e5d8bebc1cc refs/heads/improvement/JAL-3594_BG_and_UoD_logos_added 61d76e280b86f0d3cfc2fe298af449ca2cc28410 refs/heads/improvement/JAL-3594_added_subtle_grey_tesselating_logos_to_getdown_splashscreen 7f6ee29107c9ef22cc6de42e6986a71a7e5b099c refs/heads/improvement/JAL-3790_enable_copy_to_clipboard_of_getdown_splashscreen_text 7817ebe14e236eec069a16abbc16fc9d07e0913d refs/heads/improvement/JAL-3826_gradle_configuration_for_intellij_idea 082e1cf48b2af3f53e64d0074fa7efe718a0ef5e refs/heads/improvement/JAL-3847_add_dependencies_reported_by_gradle_7 9e4c993bfeb431474dbbe24b147503ec7526e6d8 refs/heads/improvement/JAL-3847_some_attempts_to_set_gradle_and_groovy_versions 08cb80a354f055421234d7e2fd5c9f6293e53226 refs/heads/improvement/JAL-3848_slivka_0.8 959eb0c3ea53b293548ca23908fa1866c804eed5 refs/heads/improvement/JAL-3848_slivka_0.8_updated_jslib cb0b037507bc9b4f1134c4886fec9b564a7508d9 refs/heads/improvement/JAL-4054_Upgrade_to_install4j10 167b079862998eb6857942b4d235d4c3dae8a5e5 refs/heads/improvement/JAL-4245-return-null-from-getRootDataset ae8edbda04dc4fabab67c71fe65c4b091b4b8073 refs/heads/improvement/JAL-4381_dynamic_value_colouring_of_annotations 9e54c643f2bcf3e3c22685e6fadaa28e470fd97a refs/heads/improvement/JAL-4469_handling_uniprot_versioned_accesion_ids c6c46de559211c83d7e8bdf450d17628ae534af4 refs/heads/improvement/JAL-4485_not_finding_chimerax_on_managed_desktop 49aba3947cbe082a083b0a5422e36e527b9227a4 refs/heads/j2s/develop eb40ed78f348375efcd74b5a683bdc2380b3bd61 refs/heads/j2s/develop-bh 4231d40261fef32ce4570a6bbad0d35df44e8baf refs/heads/j2s/develop-bh-2 c07eb2c5794833bd0241000d6844d783fe10cb82 refs/heads/j2s/develop-jim c07eb2c5794833bd0241000d6844d783fe10cb82 refs/heads/j2s/develop-mungo 55cae9b50608f760cbf6ae2627e1d79d16746186 refs/heads/j2s/develop-toc 8f66f871d7e0c6db502106a5668f4fdaf1448f2a refs/heads/jalview-headless a16e52efe8a069302d4aaa8230ed0dc2e592bcf4 refs/heads/jims/JAL-4386_from_renia 04b337fcf5c6c1ba9578928d2b984be4639ed77e refs/heads/jims/review_JAL-4409_implement_extra_schemes_in_getdown_failingtestsNetwork 1595128a4bfc730f1e55c347f0a52eb0d491ca92 refs/heads/jims/work_on_2_12/JAL-3664_hmmer_ux a2756c97c9e2598cd102061b829502dd58f33d07 refs/heads/kjvdh/features/CipresWebservices 914a9aaf5a2eeb3cdedf136c2e6b4b6e4b5d6174 refs/heads/kjvdh/features/PhylogenyViewer 62f2ed464010270830afcfe954647a51dfb5114b refs/heads/kjvdh/features/PhylogenyViewer_tabbedsupport 02afcdbc87b196aa929bcffabf83e409fd807077 refs/heads/kjvdh/features/forester 9f679c5ef6f4bebc7766c48e61d5d31aee3ff9bf refs/heads/kjvdh/features/testing bc1218cc2ea545ecb1106f3bc4ed71919fc0efe4 refs/heads/master e95c5f895775891d55d9f23d5da64f8ce6bd07bb refs/heads/merge/Ben_trying_out_JSdevelop_with_develop c03aaae74c93db1c8fa0e95258bfbccfe1d3106d refs/heads/merge/JAL-2136_phyre2_integration 834b2f0f7bee2c61ab68b285d5e81ff94b425400 refs/heads/merge/JAL-3187_JAL-3010 1b8304d543a0beb003842903ce3a662d4bbe37a7 refs/heads/merge/JAL-3210_developToJSDevelop 5cb4c1540eaca054c26ff42a8319f0dbffb1f8e6 refs/heads/merge/JAL-3285_mchmmer_with_211_develop 368b868f85fe04076d81e9bf9b799acc750d59eb refs/heads/merge/JAL-845_JAL-1640 ab7d77e52196fa14fbfe35c6373c069e4b0ba6f0 refs/heads/merge/Jalview-JS/develop_feature/JAL-3690_callback-based-web-services 8764cf9e079a8c7d72d920403ce4db71450183f1 refs/heads/merged_2_11_2_0_to_2_12 eae8ea788fabd5382a8525c1fc6aab8eadaf6020 refs/heads/mmw/JAL-3878-ws-overhaul 93f8a69a2c710d18f8e0c0ceaa6291dbb2d6e9cc refs/heads/mmw/JAL-3878_ws-overhaul-3 55b313fa4afcd5daed336266ee15af107d2eb42e refs/heads/mmw/JAL-3954_ebi_phmmer ce0b7a6c34cd7b2a46419ac8f303204dca03f816 refs/heads/mmw/JAL-4139-multi-harmony-patch fbfa316634e1b709b5abc18345bfc65ab4982bef refs/heads/mmw/JAL-4199-task-execution-update c5d63bcec264839aa8cbfdf476adf72853d23758 refs/heads/mmw/JAL-4199-web-services-testing b01f64cc79e6a7b8f101f2e15ed4d84549306bfb refs/heads/mmw/bug/JAL-4241-annotation-alignment-fix e8ca44a5b30d7a5dfef4299ac6ea3f15ad763096 refs/heads/mmw/bug/JAL-4241-annotation-alignment-fix-slivka bd14eb7c52101ce6bead70bf6872a7307b79c0e1 refs/heads/patch/JAL-1236_customClustalHeader dcbbfa95b35e8316628a92ce3c2ba31c555d3faa refs/heads/patch/JAL-2694_maptoallchainsworkaround 8c09d04c5ec473af68b498295321d58ad58c343d refs/heads/patch/JAL-2755_UniprotEnsemblSubnameWorkaround 3900c35baa85360e632d91fa9a845d8eb9d727e3 refs/heads/patch/JAL-2914_relaxedGFFpragmas 384b9ce126634ac0c7a9fef5b1788d3fe8fc91cb refs/heads/patch/JAL-2996_JAL-3053_tildeBracketsPipesEtcAsGapChars 98d7c6c0436db04ac8fa7d13be472df8546760fe refs/heads/patch/JAL-3562_fixAlignmentPanelTest 8a491d35239e20cd026fbdbef092783f759ddbc7 refs/heads/patch/JAL-3584_cherrypickto-JAL-3676_2.11.1.1 4b9650841842bbe1798455d39bde2e6f28e80a2f refs/heads/patch/JAL-3794_X_is_a_dna_rna_base_too 6121acb3dfdeaf17957bcaf275dbf8e64f629a44 refs/heads/patch/JAL-3821_ena_rna_moltype 39a8879cfa185d65e57e123e32691cf31d84013b refs/heads/patch/JAL-3847_gradleV7andV8Patches 278d4b2921b6cb58c3a6c15de0c0a4ed3c66b3f7 refs/heads/patch/JAL-4077_jmolsaveloadwindows d8f7080f6bd2953aa6a3ac14605464e48c233aa2 refs/heads/patch/JAL-4079_scalability_bottlenecks f8c699730f0692531c9401733e494a5bd14fa979 refs/heads/patch/JAL-4155_IdCanvas_getAlignPanel_fix 30d40769ea0a8edfd43afb448122cfe2cf396b2a refs/heads/patch/JAL-4195_calcWorker_for_2_11_2_6 e84c71f1aae017708e17cdb978f57afc4a75e19e refs/heads/patch/JAL-4222_quit_with_gui_export_cli_args 01454522de50064eb4439153c0584bd19db36e78 refs/heads/patch/JAL-4232-disable-unavailable-services 903878e5cd0b225d20fc674063483e74eb46421a refs/heads/patch/JAL-4311_import_pLDDT_scores_from_nonAlphaFold_sources 3f848bf2699737ea0daea99f4b5d2b68e09da06b refs/heads/patch/JAL-4333_translatecodonexception f32e9d1e19ceda6c3e631012a997f8eed9511314 refs/heads/patch/JAL-4410_multimers_from_3dbeacons 50185f672dd4c8763ab9215fe465fbf8d2be9d21 refs/heads/patch/JAL-4414_for_2114_0_identify_format_or_file_not_found_exception f59e4dd5ddf41fd74bd463799dcae7d7ff2b2d52 refs/heads/patch/JAL-4422_use_char_arrays_in_redundancy daf845d1683391b5eddf47298ec37ddf4895ba33 refs/heads/patch/JAL-4428_osx_codesigning_scripts 46c9ebf10d2411c37988315da6c5df84e36bd893 refs/heads/patch/r2_11_2_6/JAL-2350_embl_xrefs_from_uniprot_version_consistency 37de9310bec3501cbc6381e0c3dcb282fcaad812 refs/heads/releases/Release_2_10_0_Branch 4f02a7cced11020e3fc0c1220c98c3183955ae5c refs/heads/releases/Release_2_10_1_Branch ff044a6dc70d85fcef18cac3129386c98d7edda3 refs/heads/releases/Release_2_10_2_Branch b2a79a3aa3478494eec09258f8031846f6e27fc6 refs/heads/releases/Release_2_10_2b1_Branch 9a92eacef824ed3a5ff0e2ae20ae8d2d88628e3a refs/heads/releases/Release_2_10_3_Branch 3e1c9452fd504b47a9d982e221a6acb3accce4a5 refs/heads/releases/Release_2_10_4_Branch 5610d0f46a76d4269d25148d42f92d867fa1061a refs/heads/releases/Release_2_10_5_Branch f534eb87dd87652bb86db902749fabf4421b4b50 refs/heads/releases/Release_2_10_Branch 4bbd068738ed2e685f580ea1b65a7b11e32d3f3e refs/heads/releases/Release_2_11_1_4_debianpatches 376327b9f7ecbe5f33164ecfb43c53541272dc97 refs/heads/releases/Release_2_11_1_Branch c2bb08e5dc01cc9de193f19b625c3f1abd0488c5 refs/heads/releases/Release_2_11_2_Branch 24ed4dabf2f8a9cd26f4b4527d4c3c3e03efc974 refs/heads/releases/Release_2_11_3_Branch 6d1fc3490ca522df0ad2f6f25cadcff87a91eec9 refs/heads/releases/Release_2_11_4_Branch a148aca2d56223221b45f2ee7fdf82eca83e4c5b refs/heads/releases/Release_2_11_Branch d8b9b83f2739ee2c11670af890d2c63b8c1c2b7c refs/heads/releases/Release_2_9_1_Branch b4ff9affaf85176402f148c100e24b8546052173 refs/heads/reviews/features/JAL-2136_phyre2_integration_withJims 5eec392de3099482d771ab078f0db57f9c47e81c refs/heads/spike/GFF_as_first_class_filetype_improvements_JAL-4028/placeholders_get_additional_sequence_data 9f70ff4b6d193b340031997634c9e3602486bc8e refs/heads/spike/JAL-1950_hmmer3client 7a5bb267f66d8284f2d190d4c791f39fa773394b refs/heads/spike/JAL-2778_changelookandfeelOpaqueWindows 9e19bd7c9421b47f1e062a046c589a75c546026b refs/heads/spike/JAL-3548_exampleRestServer f876e862532415268bf11b902b27f29dd5baff69 refs/heads/spike/JAL-3622_Scanner_swingjs_J212_merge b1942c061c52e2d2dcaf044458eac261063cf25d refs/heads/spike/JAL-3690_with_patched_j2s_v3_2_9_plugin a0ad835c71ed4b37b0eda5ef45449e7ba8dc7240 refs/heads/spike/JAL-3753_helphtmldupes 5fd892e32ce50ece7c2a626a42c23a0be00ab10a refs/heads/spike/JAL-3781_2d_scaling f680b9a507cc1643c9eead990e15026c1eca4e6e refs/heads/spike/JAL-4047/JAL-4048_columns_in_sequenceID 0725e0e5ff41cf03ad744579921061ccdcce74df refs/heads/spike/JAL-4055_retire_JDesktop 5e8bd075739b756cac8f741a47a7de952c45f879 refs/heads/spike/JAL-4366_JAL-4386_JAL-4435_expandedmsafromstructure 5e59e8410d369c7ee653f1442c28198d75efbb30 refs/heads/spike/JAL-4386_develop_trial_merge a92d9ee8c25e41770bf745b793262f9a7937893e refs/heads/spike/JAL-4386_generate_multiple_leaves_for_ss_sources e340907f86006b014c2f28b8b2054fa908b594ad refs/heads/spike/JAL-4386_merge_multiple_leaves 8f444ff1b9acc2753ed34bfdc2e2c46f4aaebe52 refs/heads/spike/JAL-4386_merge_with_develop 0d31bd73eae1d2cf4fd5d5d22e91e0bc77e00e9a refs/heads/spike/Jalview212_with2113 b03b0404e7e6ff3e6abf0285df7b61fea69319f0 refs/heads/spike/clinvar 2a6bee646361a41a57c7a3868a966635c3d25a27 refs/heads/spike/javier_noseqhack f39d94943f685a971381d76c2f24323dd2f963c6 refs/heads/spike/jims/Release_2_12_alpha 9bf35f549e0f394ca24385ecf5b2ff4505ac6047 refs/heads/spike/jims_dec_2022_212_merge 0920ff53a47805479a84980bc09886c939c77399 refs/heads/spike/phyre2 2751f045540a1394839bb889e6036f7853916bc8 refs/heads/spikes/JAL-4113_javafx_with_Jalview_MSA 1a64eb3f07d8d54a605581c7e7338c55bcb3e70c refs/heads/spikes/JAL-4366_3di_msa_forfoldseeks 07ec92811fef5090f5c88d1f0460d01a2fb5e951 refs/heads/spikes/jim 70f98ab214fefd664892e8c8ec44811d820a802d refs/heads/spikes/kira 914a9aaf5a2eeb3cdedf136c2e6b4b6e4b5d6174 refs/heads/spikes/koen 2673aff39ac0c0dd997aa1d18daf439d0d509649 refs/heads/spikes/mungo bc2e488c714f8faa602de0a8966d8248e502e6a2 refs/heads/spikes/phyre 8b2c0525d0a6360b43f8fd5d3433e785996992c6 refs/heads/spikes/thomas 76b8230ef6abfadc38425364af19ea4f47e39b4c refs/heads/spikes/toch 50721af283710cf622e5c68bd826a87cf223948a refs/heads/story/JAL-3588_Examples_folder_in_macOS_DMG_Finder_window 692d2b97d40497e462553cdc7269e173d605ec3a refs/heads/task/JAL-3042_remove_SimpleDocument_dependency bf484926c15117ef740812a9992698f88a710615 refs/heads/task/JAL-3089annLabelsPopup cae66e7ef0ed62e152437a0dd3bff62368269971 refs/heads/task/JAL-3130_Java_11_investigations-Ben-2-CHANGES_TO_DEPRECATED_CALLS 53c54d0ada46fa839095ace36e18e30ddcf63aa0 refs/heads/task/JAL-3193mergeEnsemblGenomes 67bfdf3d0c42cf38898bd8ce712ce1ab2e924f6c refs/heads/task/JAL-3210_ben_testing_jalviewJS_building 16561706ec44c7159457dc11b3abee4292e65608 refs/heads/task/JAL-3252_adapt_getdown_to_unpack_tgz_resource_files 61e1143d502ef80da44657be8486c07a115ee56a refs/heads/task/JAL-3281_Automatic_installers_download_table_generation 5e0bbac5bf413f8ede4844afd67ac08a8ebb679f refs/heads/task/JAL-3349_Support_cli_JRE_arguments_through_getdown a82d0d7f4117d6f4d56c307187f3f29e231055a5 refs/heads/task/JAL-3805_Remove_Old_Jalview_Uninstaller_application 6165856bc82c84016c4b5354ab58abe6a6b5fcd7 refs/heads/task/JAL-3911_getdown_improvements 5db8e803feb3d04bf6142d25ded76473ec1cb571 refs/heads/task/JAL-4059_updateJmolandSwingJS eddc7529cad6e465bce8210665845253a412e89c refs/heads/task/r2_11_2/JAL-3871_Jmol_dedup 968305a24f7a2d9b89dd419f3a327961ff85dba8 refs/heads/tasks/JAL-3067_slivkaprep 6749a5b122dd78b4abbf0940dbe854dc0298ae65 refs/heads/tasks/JAL-3070_wsinterfaces 4468c1e39c57fbb67192207b4c8750dab1b1dedd refs/heads/test/JAL-3416_setOpaque_true_test_with_JalviewInternalFrame e6f25fadd43d5865b62c5ef749ad12f6c9a3a583 refs/heads/testpaches/JAL-2719_JAL-1264_testfails 610c3b982af35c03ca23cb8592a5519f478157cc refs/heads/trial_merge/develop/bug/JAL-247autoIdWidthSeqMarker af958407a40e7d7045f7191f4fa213f4384e6f56 refs/heads/update/JAL-4108_212_testng_jar_update 966e2e639242c252f4ed9e5f0e3e91b0389bd2de refs/heads/vamsasDemo 90ae01c1c1504e0ae42817f78116f1d35b317c47 refs/remotes/origin/spikes/koen 2d348a0c5220b0f108d8c029a6503dd8f751b0ff refs/tags/Archived_Release_2_7 5d501d5230ad1c42f1e17a485cb86a04ba8b538a refs/tags/Develop-2_11_2_0-d20201215 5ee9c5f4c92a8dcebe6c31697181983efb116e8a refs/tags/Develop-2_11_2_0-d20210205 aa3f623a1ff44113f3fcea09f28ab89ffc54768d refs/tags/Jalview_2_4_0b2 5b799d7fe9409cb9c05368696fae182e25fc7348 refs/tags/Jalview_2_9 fffa7168c3a0104a3cfa773a2a3b1d0723d6c7b9 refs/tags/Release_2_0 5e1ff455191eccb49a15dcaab8b0ebe1626563f7 refs/tags/Release_2_01 a938578363db9452d4fee93666c8bfe343b7710f refs/tags/Release_2_02 503ebba0021fa583fa7af58f9406f9234274fd7c refs/tags/Release_2_03 50101c6da4cd0c6cd3d0438fa66905aae30b58b7 refs/tags/Release_2_04 5e34f249e1565c22cad33fb37037047236ba8eca refs/tags/Release_2_05 d783fbae7be6592377a870e21b45012dbd7bbe08 refs/tags/Release_2_05b 41aa357b0c6071062fbee339e598fc7fbffef02f refs/tags/Release_2_06 7bbb724c84401ce9456a427593c6ae34f94d1c03 refs/tags/Release_2_07 61704c27d12b651a766594552da77857a5d8ab4c refs/tags/Release_2_08 3626ea082cc69ff0609eb68b206c85d80e2b1c36 refs/tags/Release_2_08_1 d157b5d6c9aa88a3eb70afb0cccee08d8ec86afd refs/tags/Release_2_1 4e1d9a661070768f2b74a8ef7925c38372ee83d6 refs/tags/Release_2_10_0 4dc7619bed1c475c35f328601b5d7d46116327a6 refs/tags/Release_2_10_0b1 5f16fae89ea1f8e43fc847521d702ef78a4185c2 refs/tags/Release_2_10_0b1_final d9c7868a610eff29a8eddb160b6dc78a94a72470 refs/tags/Release_2_10_0b1_sourcepub 260f6abfaaafac067d5bda703e5b21be480bcc8f refs/tags/Release_2_10_1 7750a4b02d54025e18a216183957fa70a91e3682 refs/tags/Release_2_10_2 272e577b577ff9bd3db547d527aaeff08de26ab9 refs/tags/Release_2_10_2b1 488e8b4ff975fbb83eac40f9e9f16d40c5a33d34 refs/tags/Release_2_10_2b2 7757b97abcc080b0e0d7a6bdbf5b7fcd04571bd8 refs/tags/Release_2_10_3 9a92eacef824ed3a5ff0e2ae20ae8d2d88628e3a refs/tags/Release_2_10_3b1 c0a005cd8531b018cd5eee375ec51581bb2e4105 refs/tags/Release_2_10_4 5d0c7db11ef8e4ce6deffc3dbf976b63554b2141 refs/tags/Release_2_10_4b1 5610d0f46a76d4269d25148d42f92d867fa1061a refs/tags/Release_2_10_5 a148aca2d56223221b45f2ee7fdf82eca83e4c5b refs/tags/Release_2_11_0 30119dce1634085c41372d55b528a7a878b03b23 refs/tags/Release_2_11_1_0 4d959452a9c486b6d94291d8e819036ec19b09ef refs/tags/Release_2_11_1_1 433635c8784cfa421da35e45aa24dd6f16a8bf6b refs/tags/Release_2_11_1_2 6875edc608179e9710388439099542296f263c15 refs/tags/Release_2_11_1_3 930bcaf01651a15d371c961b1276d9b139f586e2 refs/tags/Release_2_11_1_4 2c0496537b3ea1fb76dca30c7c3b5d87c0333260 refs/tags/Release_2_11_1_5 a7e71732f248a74c0fe30b5ff400584b91960791 refs/tags/Release_2_11_1_6 376327b9f7ecbe5f33164ecfb43c53541272dc97 refs/tags/Release_2_11_1_7 2040e7e728e666d0135f31c65f3eaccc0bfe40ae refs/tags/Release_2_11_2_0 56955fc6a526b35bff79df13613bc88390824fec refs/tags/Release_2_11_2_1 11c0c1e2426619039052264ce0f2b06a78cd9194 refs/tags/Release_2_11_2_2 bc93afe8b03eeafdba761dac61cd212434e3de7b refs/tags/Release_2_11_2_3 92a19874dd2397604d4c7284a15eb54f8a3cba58 refs/tags/Release_2_11_2_4 519295fc0459e0a76e5be32292c085d9bde51484 refs/tags/Release_2_11_2_5 d5bd34eb49f43735e240058f8875ab0bfcae4441 refs/tags/Release_2_11_2_6 bd990168d0b3c7772c961b56144c3dee94a09054 refs/tags/Release_2_11_2_7 6544c5e45b8151892de506391662111afcae1052 refs/tags/Release_2_11_3_0 bec7c06338ee402f6cde54173ddff2295ca702df refs/tags/Release_2_11_3_1 63363f5d656679c0eb0276c95be65b3b7b2c5ae2 refs/tags/Release_2_11_3_2 24ed4dabf2f8a9cd26f4b4527d4c3c3e03efc974 refs/tags/Release_2_11_3_3 7edd0787457cf0a01f95f26e3c89b49175b48de0 refs/tags/Release_2_11_4_0 6d1fc3490ca522df0ad2f6f25cadcff87a91eec9 refs/tags/Release_2_11_4_1 e059f46e77f5106185c5ebd6be7c5c31c2fbd230 refs/tags/Release_2_1_1 56d4c1b68866f75613556f7f93da4eb8ce463f42 refs/tags/Release_2_2 9c1a0325b6cd763f212f838f4a2998c38b052490 refs/tags/Release_2_3 9c1a0325b6cd763f212f838f4a2998c38b052490 refs/tags/Release_2_3_buildfix affd42b5ca69723c9d0d114404d1700e5757806b refs/tags/Release_2_4 fa80736070da3ccf2dbd28ef31ad9dcfe3231e22 refs/tags/Release_2_4_0 b917c7905a12b147c6f99b62e92c3fca6f9bf719 refs/tags/Release_2_5 a10a465359de7b8c0baff4925d4b267a28eb0071 refs/tags/Release_2_5_1 b917c7905a12b147c6f99b62e92c3fca6f9bf719 refs/tags/Release_2_5_branch 069f21298ab1fe4460067f6158745ba3c6726e81 refs/tags/Release_2_6 4230b657b444c3667e9c8cc7974730681130ebae refs/tags/Release_2_6_1 f335ea905223c014fb305051b45960ec7e28cfc4 refs/tags/Release_2_7 159f36a8d3aa393ee0931dd13ac9e8cc38a36e8d refs/tags/Release_2_8 a90ca46aae39b99ea2fbfc1aefc9cc197d590689 refs/tags/Release_2_8_0b1 2928ced13b8509bd769fa02e75132ddd8a00430e refs/tags/Release_2_8_1 2525e88afc4d572c6d232719362f57cb9a84d609 refs/tags/Release_2_8_1^{} 4cf475567facc11b4be0f6e0849c73cbfc98508d refs/tags/Release_2_8_2 ec669c13867d001e07c9cef157c268afe03be9f3 refs/tags/Release_2_8_2b1 eb9c652416a69e6db0531e956dd2011012eac898 refs/tags/Release_2_9_0b1 c19d2a91ca05e052e3408bf5852d88eb5d0608f1 refs/tags/Release_2_9_0b2 8549afc7ca45e84e3425631475ac703b2f7506a8 refs/tags/Root_Release_2_5_Branch c5ae36527ac4366160ba09b88e5e74568f71b836 refs/tags/Root_VamJalview_2_07b+ 1ecf6419aba86993b3c223bf5ec0fa79427baf85 refs/tags/start