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65 <div class="title">duplex.h</div> </div>
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68 <a href="duplex_8h.html">Go to the documentation of this file.</a><div class="fragment"><div class="line"><a name="l00001"></a><span class="lineno"> 1</span> <span class="preprocessor">#ifndef __VIENNA_RNA_PACKAGE_DUPLEX_H__</span></div>
69 <div class="line"><a name="l00002"></a><span class="lineno"> 2</span> <span class="preprocessor"></span><span class="preprocessor">#define __VIENNA_RNA_PACKAGE_DUPLEX_H__</span></div>
70 <div class="line"><a name="l00003"></a><span class="lineno"> 3</span> <span class="preprocessor"></span></div>
71 <div class="line"><a name="l00004"></a><span class="lineno"> 4</span> <span class="preprocessor">#include "<a class="code" href="data__structures_8h.html" title="All datastructures and typedefs shared among the Vienna RNA Package can be found here.">data_structures.h</a>"</span></div>
72 <div class="line"><a name="l00005"></a><span class="lineno"> 5</span> </div>
73 <div class="line"><a name="l00012"></a><span class="lineno"> 12</span> <a class="code" href="structduplexT.html">duplexT</a> duplexfold( <span class="keyword">const</span> <span class="keywordtype">char</span> *s1,</div>
74 <div class="line"><a name="l00013"></a><span class="lineno"> 13</span>  <span class="keyword">const</span> <span class="keywordtype">char</span> *s2);</div>
75 <div class="line"><a name="l00014"></a><span class="lineno"> 14</span> </div>
76 <div class="line"><a name="l00015"></a><span class="lineno"> 15</span> <a class="code" href="structduplexT.html">duplexT</a> *duplex_subopt( <span class="keyword">const</span> <span class="keywordtype">char</span> *s1,</div>
77 <div class="line"><a name="l00016"></a><span class="lineno"> 16</span>  <span class="keyword">const</span> <span class="keywordtype">char</span> *s2,</div>
78 <div class="line"><a name="l00017"></a><span class="lineno"> 17</span>  <span class="keywordtype">int</span> delta,</div>
79 <div class="line"><a name="l00018"></a><span class="lineno"> 18</span>  <span class="keywordtype">int</span> w);</div>
80 <div class="line"><a name="l00019"></a><span class="lineno"> 19</span> </div>
81 <div class="line"><a name="l00020"></a><span class="lineno"> 20</span> <a class="code" href="structduplexT.html">duplexT</a> aliduplexfold(<span class="keyword">const</span> <span class="keywordtype">char</span> *s1[],</div>
82 <div class="line"><a name="l00021"></a><span class="lineno"> 21</span>  <span class="keyword">const</span> <span class="keywordtype">char</span> *s2[]);</div>
83 <div class="line"><a name="l00022"></a><span class="lineno"> 22</span> </div>
84 <div class="line"><a name="l00023"></a><span class="lineno"> 23</span> <a class="code" href="structduplexT.html">duplexT</a> *aliduplex_subopt(<span class="keyword">const</span> <span class="keywordtype">char</span> *s1[],</div>
85 <div class="line"><a name="l00024"></a><span class="lineno"> 24</span>  <span class="keyword">const</span> <span class="keywordtype">char</span> *s2[],</div>
86 <div class="line"><a name="l00025"></a><span class="lineno"> 25</span>  <span class="keywordtype">int</span> delta,</div>
87 <div class="line"><a name="l00026"></a><span class="lineno"> 26</span>  <span class="keywordtype">int</span> w);</div>
88 <div class="line"><a name="l00027"></a><span class="lineno"> 27</span> </div>
89 <div class="line"><a name="l00028"></a><span class="lineno"> 28</span> <span class="preprocessor">#endif</span></div>
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