binaries/src/ViennaRNA/doc/html/globals_vars.html

   1 <!DOCTYPE html PUBLIC "-//W3C//DTD XHTML 1.0 Transitional//EN" "http://www.w3.org/TR/xhtml1/DTD/xhtml1-transitional.dtd">
   2 <html xmlns="http://www.w3.org/1999/xhtml">
   3 <head>
   4 <meta http-equiv="Content-Type" content="text/xhtml;charset=UTF-8"/>
   5 <meta http-equiv="X-UA-Compatible" content="IE=9"/>
   6 <title>RNAlib-2.1.2: Globals</title>
   7 <link href="tabs.css" rel="stylesheet" type="text/css"/>
   8 <script type="text/javascript" src="jquery.js"></script>
   9 <script type="text/javascript" src="dynsections.js"></script>
  10 <link href="navtree.css" rel="stylesheet" type="text/css"/>
  11 <script type="text/javascript" src="resize.js"></script>
  12 <script type="text/javascript" src="navtree.js"></script>
  13 <script type="text/javascript">
  14   $(document).ready(initResizable);
  15 </script>
  16 <link href="doxygen.css" rel="stylesheet" type="text/css" />
  17 </head>
  18 <body>
  19 <div id="top"><!-- do not remove this div, it is closed by doxygen! -->
  20 <div id="titlearea">
  21 <table cellspacing="0" cellpadding="0">
  22  <tbody>
  23  <tr style="height: 56px;">
  24   <td style="padding-left: 0.5em;">
  25    <div id="projectname">RNAlib-2.1.2
  26    </div>
  27   </td>
  28  </tr>
  29  </tbody>
  30 </table>
  31 </div>
  32 <!-- end header part -->
  33 <!-- Generated by Doxygen 1.8.1.1 -->
  34   <div id="navrow1" class="tabs">
  35     <ul class="tablist">
  36       <li><a href="index.html"><span>Main&#160;Page</span></a></li>
  37       <li><a href="pages.html"><span>Related&#160;Pages</span></a></li>
  38       <li><a href="modules.html"><span>Modules</span></a></li>
  39       <li><a href="annotated.html"><span>Data&#160;Structures</span></a></li>
  40       <li class="current"><a href="files.html"><span>Files</span></a></li>
  41     </ul>
  42   </div>
  43   <div id="navrow2" class="tabs2">
  44     <ul class="tablist">
  45       <li><a href="files.html"><span>File&#160;List</span></a></li>
  46       <li class="current"><a href="globals.html"><span>Globals</span></a></li>
  47     </ul>
  48   </div>
  49   <div id="navrow3" class="tabs2">
  50     <ul class="tablist">
  51       <li><a href="globals.html"><span>All</span></a></li>
  52       <li><a href="globals_func.html"><span>Functions</span></a></li>
  53       <li class="current"><a href="globals_vars.html"><span>Variables</span></a></li>
  54       <li><a href="globals_defs.html"><span>Macros</span></a></li>
  55     </ul>
  56   </div>
  57   <div id="navrow4" class="tabs3">
  58     <ul class="tablist">
  59       <li><a href="#index_a"><span>a</span></a></li>
  60       <li><a href="#index_b"><span>b</span></a></li>
  61       <li><a href="#index_c"><span>c</span></a></li>
  62       <li><a href="#index_d"><span>d</span></a></li>
  63       <li><a href="#index_e"><span>e</span></a></li>
  64       <li><a href="#index_f"><span>f</span></a></li>
  65       <li><a href="#index_g"><span>g</span></a></li>
  66       <li><a href="#index_h"><span>h</span></a></li>
  67       <li><a href="#index_i"><span>i</span></a></li>
  68       <li><a href="#index_j"><span>j</span></a></li>
  69       <li><a href="#index_l"><span>l</span></a></li>
  70       <li><a href="#index_m"><span>m</span></a></li>
  71       <li><a href="#index_n"><span>n</span></a></li>
  72       <li><a href="#index_o"><span>o</span></a></li>
  73       <li><a href="#index_p"><span>p</span></a></li>
  74       <li><a href="#index_r"><span>r</span></a></li>
  75       <li><a href="#index_s"><span>s</span></a></li>
  76       <li><a href="#index_t"><span>t</span></a></li>
  77       <li><a href="#index_u"><span>u</span></a></li>
  78       <li><a href="#index_x"><span>x</span></a></li>
  79     </ul>
  80   </div>
  81 </div><!-- top -->
  82 <div id="side-nav" class="ui-resizable side-nav-resizable">
  83   <div id="nav-tree">
  84     <div id="nav-tree-contents">
  85     </div>
  86   </div>
  87   <div id="splitbar" style="-moz-user-select:none;"
  88        class="ui-resizable-handle">
  89   </div>
  90 </div>
  91 <script type="text/javascript">
  92 $(document).ready(function(){initNavTree('globals_vars.html','');});
  93 </script>
  94 <div id="doc-content">
  95 <div class="contents">
  96 &#160;
  97
  98 <h3><a class="anchor" id="index_a"></a>- a -</h3><ul>
  99 <li>aligned_line
 100 : <a class="el" href="dist__vars_8h.html#ac1605fe3448ad0a0b809c4fb8f6a854a">dist_vars.h</a>
 101 </li>
 102 </ul>
 103
 104
 105 <h3><a class="anchor" id="index_b"></a>- b -</h3><ul>
 106 <li>backtrack_type
 107 : <a class="el" href="fold__vars_8h.html#a83bdb43472a259c71e69fa9f70f420c3">fold_vars.h</a>
 108 </li>
 109 <li>base_pair
 110 : <a class="el" href="fold__vars_8h.html#a0244a629b5ab4f58b77590c3dfd130dc">fold_vars.h</a>
 111 </li>
 112 </ul>
 113
 114
 115 <h3><a class="anchor" id="index_c"></a>- c -</h3><ul>
 116 <li>circ
 117 : <a class="el" href="fold__vars_8h.html#af9202a1a09f5828dc731e2d9a10fa111">fold_vars.h</a>
 118 </li>
 119 <li>cost_matrix
 120 : <a class="el" href="dist__vars_8h.html#ab65d8ff14c6937612212526a60f59b3c">dist_vars.h</a>
 121 </li>
 122 <li>csv
 123 : <a class="el" href="fold__vars_8h.html#af2763d55a74663a5e60652b8880baa5b">fold_vars.h</a>
 124 </li>
 125 <li>cut_point
 126 : <a class="el" href="fold_8h.html#ab9b2c3a37a5516614c06d0ab54b97cda">fold.h</a>
 127 , <a class="el" href="fold__vars_8h.html#ab9b2c3a37a5516614c06d0ab54b97cda">fold_vars.h</a>
 128 </li>
 129 <li>cv_fact
 130 : <a class="el" href="group__consensus__fold.html#gaf3cbac6ff5d706d6e414677841ddf94c">alifold.h</a>
 131 </li>
 132 </ul>
 133
 134
 135 <h3><a class="anchor" id="index_d"></a>- d -</h3><ul>
 136 <li>dangles
 137 : <a class="el" href="fold__vars_8h.html#a72b511ed1201f7e23ec437e468790d74">fold_vars.h</a>
 138 </li>
 139 <li>density_of_states
 140 : <a class="el" href="group__dos.html#ga937634a76b46a22530a74906f1957a9e">subopt.h</a>
 141 </li>
 142 <li>do_backtrack
 143 : <a class="el" href="fold__vars_8h.html#ad512b5dd4dbec60faccfe137bb474489">fold_vars.h</a>
 144 </li>
 145 </ul>
 146
 147
 148 <h3><a class="anchor" id="index_e"></a>- e -</h3><ul>
 149 <li>edit_backtrack
 150 : <a class="el" href="dist__vars_8h.html#aa03194c513af6b860e7b33e370b82bdb">dist_vars.h</a>
 151 </li>
 152 <li>energy_set
 153 : <a class="el" href="fold__vars_8h.html#afb1ef1166da85092ae8a325e02dcae71">fold_vars.h</a>
 154 </li>
 155 <li>eos_debug
 156 : <a class="el" href="group__eval.html#ga567530678f6260a1a649a5beca5da4c5">fold.h</a>
 157 </li>
 158 </ul>
 159
 160
 161 <h3><a class="anchor" id="index_f"></a>- f -</h3><ul>
 162 <li>F_monomer
 163 : <a class="el" href="group__pf__cofold.html#gac2d1851a710a8561390861155ca988fe">part_func_co.h</a>
 164 </li>
 165 <li>final_cost
 166 : <a class="el" href="group__inverse__fold.html#ga7f17d3b169af048d32bb185039a9c09c">inverse.h</a>
 167 </li>
 168 <li>fold_constrained
 169 : <a class="el" href="fold__vars_8h.html#a0afc287c2464866d94858c39175154af">fold_vars.h</a>
 170 </li>
 171 </ul>
 172
 173
 174 <h3><a class="anchor" id="index_g"></a>- g -</h3><ul>
 175 <li>give_up
 176 : <a class="el" href="group__inverse__fold.html#ga7ec4ba51f86e1717a1e174264e4a75ce">inverse.h</a>
 177 </li>
 178 <li>gquad
 179 : <a class="el" href="fold__vars_8h.html#a25f2bdcdf56e813d288845484a13d704">fold_vars.h</a>
 180 </li>
 181 </ul>
 182
 183
 184 <h3><a class="anchor" id="index_h"></a>- h -</h3><ul>
 185 <li>helix_size
 186 : <a class="el" href="RNAstruct_8h.html#a8218c0d581a3fba2a1a56a196abe19a5">RNAstruct.h</a>
 187 </li>
 188 </ul>
 189
 190
 191 <h3><a class="anchor" id="index_i"></a>- i -</h3><ul>
 192 <li>iindx
 193 : <a class="el" href="fold__vars_8h.html#a92089ae3a51b5d75a14ce9cc29cc8317">fold_vars.h</a>
 194 </li>
 195 <li>inv_verbose
 196 : <a class="el" href="group__inverse__fold.html#gafcfc65fba01b9cca5946726ed9057a63">inverse.h</a>
 197 </li>
 198 </ul>
 199
 200
 201 <h3><a class="anchor" id="index_j"></a>- j -</h3><ul>
 202 <li>james_rule
 203 : <a class="el" href="fold__vars_8h.html#af349001ad3b4d008d0051d935b1b6261">fold_vars.h</a>
 204 </li>
 205 </ul>
 206
 207
 208 <h3><a class="anchor" id="index_l"></a>- l -</h3><ul>
 209 <li>logML
 210 : <a class="el" href="fold_8h.html#a80c3c5fd35e7479704cc91d2d0367743">fold.h</a>
 211 , <a class="el" href="fold__vars_8h.html#a80c3c5fd35e7479704cc91d2d0367743">fold_vars.h</a>
 212 </li>
 213 <li>loop_degree
 214 : <a class="el" href="RNAstruct_8h.html#aef14e2f8ab3f61e8e659ba6b9003b08a">RNAstruct.h</a>
 215 </li>
 216 <li>loop_size
 217 : <a class="el" href="RNAstruct_8h.html#a3f31e0e48125601bfa57b52f8b038e8e">RNAstruct.h</a>
 218 </li>
 219 <li>loops
 220 : <a class="el" href="RNAstruct_8h.html#a439fcb9f8d4f9f4d2227fde5fbfecb30">RNAstruct.h</a>
 221 </li>
 222 </ul>
 223
 224
 225 <h3><a class="anchor" id="index_m"></a>- m -</h3><ul>
 226 <li>mirnatog
 227 : <a class="el" href="group__pf__cofold.html#gaff27888c4088cc1f60fd59cbd589474c">part_func_co.h</a>
 228 </li>
 229 </ul>
 230
 231
 232 <h3><a class="anchor" id="index_n"></a>- n -</h3><ul>
 233 <li>nc_fact
 234 : <a class="el" href="group__consensus__fold.html#ga502948a122a2af5b914355b1f3ea2f61">alifold.h</a>
 235 </li>
 236 <li>no_closingGU
 237 : <a class="el" href="fold__vars_8h.html#aa8d1c7b92489179e1eafa562b7bdd259">fold_vars.h</a>
 238 </li>
 239 <li>noGU
 240 : <a class="el" href="fold__vars_8h.html#abf380d09e4f1ab94fc6af57cf0ad5d32">fold_vars.h</a>
 241 </li>
 242 <li>noLonelyPairs
 243 : <a class="el" href="fold__vars_8h.html#a097eccaabd6ae8b4fef83cccff85bb5d">fold_vars.h</a>
 244 </li>
 245 <li>nonstandards
 246 : <a class="el" href="fold__vars_8h.html#a2695d91cc535d09c2eae5c3884e2ec64">fold_vars.h</a>
 247 </li>
 248 </ul>
 249
 250
 251 <h3><a class="anchor" id="index_o"></a>- o -</h3><ul>
 252 <li>oldAliEn
 253 : <a class="el" href="fold__vars_8h.html#ac408868ba00671cbc7d1d535105af045">fold_vars.h</a>
 254 </li>
 255 </ul>
 256
 257
 258 <h3><a class="anchor" id="index_p"></a>- p -</h3><ul>
 259 <li>pairs
 260 : <a class="el" href="RNAstruct_8h.html#a6341cbb704924824e0236c1dce791032">RNAstruct.h</a>
 261 </li>
 262 <li>pf_scale
 263 : <a class="el" href="fold__vars_8h.html#ad3b22044065acc6dee0af68931b52cfd">fold_vars.h</a>
 264 </li>
 265 <li>pr
 266 : <a class="el" href="fold__vars_8h.html#a0f5757427fd5f2f79d6fca0081cd5a52">fold_vars.h</a>
 267 </li>
 268 <li>print_energy
 269 : <a class="el" href="group__subopt__wuchty.html#ga5e57d914bcb5feeecdf520e25313fcfe">subopt.h</a>
 270 </li>
 271 </ul>
 272
 273
 274 <h3><a class="anchor" id="index_r"></a>- r -</h3><ul>
 275 <li>ribo
 276 : <a class="el" href="fold__vars_8h.html#a0656afca1d2853f9ee6591172f5638de">fold_vars.h</a>
 277 </li>
 278 <li>RibosumFile
 279 : <a class="el" href="fold__vars_8h.html#a5dbaa0cca2c8c82048a0f0e38e164944">fold_vars.h</a>
 280 </li>
 281 <li>rna_plot_type
 282 : <a class="el" href="plot__layouts_8h.html#a5964c4581431b098b80027d6e14dcdd4">plot_layouts.h</a>
 283 </li>
 284 </ul>
 285
 286
 287 <h3><a class="anchor" id="index_s"></a>- s -</h3><ul>
 288 <li>st_back
 289 : <a class="el" href="group__subopt__stochbt.html#gacd79b1a570e6ad9be24cb11fe8cae30a">part_func.h</a>
 290 </li>
 291 <li>subopt_sorted
 292 : <a class="el" href="group__subopt__wuchty.html#ga873cf8ed69e0437f8efa8b1fec854a0e">subopt.h</a>
 293 </li>
 294 <li>symbolset
 295 : <a class="el" href="group__inverse__fold.html#ga8f791e7740a5a28b9f6fafb4e60301d9">inverse.h</a>
 296 </li>
 297 </ul>
 298
 299
 300 <h3><a class="anchor" id="index_t"></a>- t -</h3><ul>
 301 <li>temperature
 302 : <a class="el" href="fold__vars_8h.html#ab4b11c8d9c758430960896bc3fe82ead">fold_vars.h</a>
 303 </li>
 304 <li>tetra_loop
 305 : <a class="el" href="fold__vars_8h.html#a4f6265bdf0ead7ff4628a360adbfd77e">fold_vars.h</a>
 306 </li>
 307 </ul>
 308
 309
 310 <h3><a class="anchor" id="index_u"></a>- u -</h3><ul>
 311 <li>uniq_ML
 312 : <a class="el" href="fold_8h.html#a6c5655c8b272e3e6cab74dd0f540294f">fold.h</a>
 313 </li>
 314 <li>unpaired
 315 : <a class="el" href="RNAstruct_8h.html#add2f952597e02d66e1116a9d11d252d6">RNAstruct.h</a>
 316 </li>
 317 </ul>
 318
 319
 320 <h3><a class="anchor" id="index_x"></a>- x -</h3><ul>
 321 <li>xsubi
 322 : <a class="el" href="utils_8h.html#af9a866c8417afda7368bbac939ab3c47">utils.h</a>
 323 </li>
 324 </ul>
 325 </div><!-- contents -->
 326 </div><!-- doc-content -->
 327 <!-- start footer part -->
 328 <div id="nav-path" class="navpath"><!-- id is needed for treeview function! -->
 329   <ul>
 330     <li class="footer">Generated on Wed Jul 24 2013 13:39:00 for RNAlib-2.1.2 by
 331     <a href="http://www.doxygen.org/index.html">
 332     <img class="footer" src="doxygen.png" alt="doxygen"/></a> 1.8.1.1 </li>
 333   </ul>
 334 </div>
 335 </body>
 336 </html>