binaries/src/ViennaRNA/doc/html/part__func_8h.html

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  70 <h1>/homes/fmmarquesmadeira/Projects/jabaws/binaries/src/ViennaRNA/H/part_func.h File Reference</h1>
  71 <p>Partition function of single RNA sequences.
  72 <a href="#_details">More...</a></p>
  73 <div class="dynheader">
  74 Include dependency graph for part_func.h:</div>
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  76 <div class="center"><img src="part__func_8h__incl.png" border="0" usemap="#_2homes_2fmmarquesmadeira_2Projects_2jabaws_2binaries_2src_2ViennaRNA_2H_2part__func_8h_map" alt=""/></div>
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  78 <area shape="rect" id="node3" href="data__structures_8h.html" title="All datastructures and typedefs shared among the Vienna RNA Package can be found..." alt="" coords="201,86,324,117"/><area shape="rect" id="node5" href="energy__const_8h.html" title="energy_const.h" alt="" coords="207,166,319,197"/></map>
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  80
  81 <p><a href="part__func_8h_source.html">Go to the source code of this file.</a></p>
  82 <table border="0" cellpadding="0" cellspacing="0">
  83 <tr><td colspan="2"><h2>Functions</h2></td></tr>
  84 <tr><td class="memItemLeft" align="right" valign="top">float&nbsp;</td><td class="memItemRight" valign="bottom"><a class="el" href="group__pf__fold.html#ga1839c61275760944b3a007c41d5c0823">pf_fold_par</a> (const char *sequence, char *structure, <a class="el" href="structpf__paramT.html">pf_paramT</a> *parameters, int calculate_bppm, int is_constrained, int is_circular)</td></tr>
  85 <tr><td class="mdescLeft">&nbsp;</td><td class="mdescRight">Compute the partition function <img class="formulaInl" alt="$Q$" src="form_18.png"/> for a given RNA sequence.  <a href="group__pf__fold.html#ga1839c61275760944b3a007c41d5c0823"></a><br/></td></tr>
  86 <tr><td class="memItemLeft" align="right" valign="top">float&nbsp;</td><td class="memItemRight" valign="bottom"><a class="el" href="group__pf__fold.html#gadc3db3d98742427e7001a7fd36ef28c2">pf_fold</a> (const char *sequence, char *structure)</td></tr>
  87 <tr><td class="mdescLeft">&nbsp;</td><td class="mdescRight">Compute the partition function <img class="formulaInl" alt="$Q$" src="form_18.png"/> of an RNA sequence.  <a href="group__pf__fold.html#gadc3db3d98742427e7001a7fd36ef28c2"></a><br/></td></tr>
  88 <tr><td class="memItemLeft" align="right" valign="top">float&nbsp;</td><td class="memItemRight" valign="bottom"><a class="el" href="group__pf__fold.html#ga819ce5fca8984004ac81c4a3b04cb735">pf_circ_fold</a> (const char *sequence, char *structure)</td></tr>
  89 <tr><td class="mdescLeft">&nbsp;</td><td class="mdescRight">Compute the partition function of a circular RNA sequence.  <a href="group__pf__fold.html#ga819ce5fca8984004ac81c4a3b04cb735"></a><br/></td></tr>
  90 <tr><td class="memItemLeft" align="right" valign="top">char *&nbsp;</td><td class="memItemRight" valign="bottom"><a class="el" href="group__subopt__stochbt.html#gac03ca6db186bb3bf0a2a326d7fb3ba03">pbacktrack</a> (char *sequence)</td></tr>
  91 <tr><td class="mdescLeft">&nbsp;</td><td class="mdescRight">Sample a secondary structure from the Boltzmann ensemble according its probability<br/>
  92 .  <a href="group__subopt__stochbt.html#gac03ca6db186bb3bf0a2a326d7fb3ba03"></a><br/></td></tr>
  93 <tr><td class="memItemLeft" align="right" valign="top">char *&nbsp;</td><td class="memItemRight" valign="bottom"><a class="el" href="group__subopt__stochbt.html#ga00474051204ac9ad576b3e45174d03ff">pbacktrack_circ</a> (char *sequence)</td></tr>
  94 <tr><td class="mdescLeft">&nbsp;</td><td class="mdescRight">Sample a secondary structure of a circular RNA from the Boltzmann ensemble according its probability.  <a href="group__subopt__stochbt.html#ga00474051204ac9ad576b3e45174d03ff"></a><br/></td></tr>
  95 <tr><td class="memItemLeft" align="right" valign="top">void&nbsp;</td><td class="memItemRight" valign="bottom"><a class="el" href="group__pf__fold.html#gae73db3f49a94f0f72e067ecd12681dbd">free_pf_arrays</a> (void)</td></tr>
  96 <tr><td class="mdescLeft">&nbsp;</td><td class="mdescRight">Free arrays for the partition function recursions.  <a href="group__pf__fold.html#gae73db3f49a94f0f72e067ecd12681dbd"></a><br/></td></tr>
  97 <tr><td class="memItemLeft" align="right" valign="top">void&nbsp;</td><td class="memItemRight" valign="bottom"><a class="el" href="group__pf__fold.html#ga384e927890f9c034ff09fa66da102d28">update_pf_params</a> (int length)</td></tr>
  98 <tr><td class="mdescLeft">&nbsp;</td><td class="mdescRight">Recalculate energy parameters.  <a href="group__pf__fold.html#ga384e927890f9c034ff09fa66da102d28"></a><br/></td></tr>
  99 <tr><td class="memItemLeft" align="right" valign="top"><a class="anchor" id="ga0733527a94de3b79eee3c3c03c99c1bc"></a><!-- doxytag: member="part_func.h::update_pf_params_par" ref="ga0733527a94de3b79eee3c3c03c99c1bc" args="(int length, pf_paramT *parameters)" -->
 100 void&nbsp;</td><td class="memItemRight" valign="bottom"><a class="el" href="group__pf__fold.html#ga0733527a94de3b79eee3c3c03c99c1bc">update_pf_params_par</a> (int length, <a class="el" href="structpf__paramT.html">pf_paramT</a> *parameters)</td></tr>
 101 <tr><td class="mdescLeft">&nbsp;</td><td class="mdescRight">Recalculate energy parameters. <br/></td></tr>
 102 <tr><td class="memItemLeft" align="right" valign="top">double *&nbsp;</td><td class="memItemRight" valign="bottom"><a class="el" href="group__pf__fold.html#ga6d463707d5f64bdc4d21515b7dd9b115">export_bppm</a> (void)</td></tr>
 103 <tr><td class="mdescLeft">&nbsp;</td><td class="mdescRight">Get a pointer to the base pair probability arrayAccessing the base pair probabilities for a pair (i,j) is achieved by.  <a href="group__pf__fold.html#ga6d463707d5f64bdc4d21515b7dd9b115"></a><br/></td></tr>
 104 <tr><td class="memItemLeft" align="right" valign="top">void&nbsp;</td><td class="memItemRight" valign="bottom"><a class="el" href="group__pf__fold.html#ga03e15e831a31b1154855ab47edbdb019">assign_plist_from_pr</a> (<a class="el" href="structplist.html">plist</a> **pl, double *probs, int length, double cutoff)</td></tr>
 105 <tr><td class="mdescLeft">&nbsp;</td><td class="mdescRight">Create a <a class="el" href="structplist.html" title="this datastructure is used as input parameter in functions of PS_dot.h and others...">plist</a> from a probability matrix.  <a href="group__pf__fold.html#ga03e15e831a31b1154855ab47edbdb019"></a><br/></td></tr>
 106 <tr><td class="memItemLeft" align="right" valign="top">int&nbsp;</td><td class="memItemRight" valign="bottom"><a class="el" href="group__pf__fold.html#ga18607e79e106cad827f482eedd2f632e">get_pf_arrays</a> (short **S_p, short **S1_p, char **ptype_p, double **qb_p, double **qm_p, double **q1k_p, double **qln_p)</td></tr>
 107 <tr><td class="mdescLeft">&nbsp;</td><td class="mdescRight">Get the pointers to (almost) all relavant computation arrays used in partition function computation.  <a href="group__pf__fold.html#ga18607e79e106cad827f482eedd2f632e"></a><br/></td></tr>
 108 <tr><td class="memItemLeft" align="right" valign="top"><a class="anchor" id="a189e2a1ec6cc32c53ea72f7543b0441e"></a><!-- doxytag: member="part_func.h::get_subseq_F" ref="a189e2a1ec6cc32c53ea72f7543b0441e" args="(int i, int j)" -->
 109 double&nbsp;</td><td class="memItemRight" valign="bottom"><a class="el" href="part__func_8h.html#a189e2a1ec6cc32c53ea72f7543b0441e">get_subseq_F</a> (int i, int j)</td></tr>
 110 <tr><td class="mdescLeft">&nbsp;</td><td class="mdescRight">Get the free energy of a subsequence from the q[] array. <br/></td></tr>
 111 <tr><td class="memItemLeft" align="right" valign="top">char *&nbsp;</td><td class="memItemRight" valign="bottom"><a class="el" href="group__centroid__fold.html#ga9aba0ba1433a6d259331e0fe9fc4a9a6">get_centroid_struct_pl</a> (int length, double *dist, <a class="el" href="structplist.html">plist</a> *pl)</td></tr>
 112 <tr><td class="mdescLeft">&nbsp;</td><td class="mdescRight">Get the centroid structure of the ensemble.  <a href="group__centroid__fold.html#ga9aba0ba1433a6d259331e0fe9fc4a9a6"></a><br/></td></tr>
 113 <tr><td class="memItemLeft" align="right" valign="top">char *&nbsp;</td><td class="memItemRight" valign="bottom"><a class="el" href="group__centroid__fold.html#gacdabece4aa1e20c9eaa97acb4c4dcc38">get_centroid_struct_pr</a> (int length, double *dist, double *<a class="el" href="fold__vars_8h.html#a0f5757427fd5f2f79d6fca0081cd5a52">pr</a>)</td></tr>
 114 <tr><td class="mdescLeft">&nbsp;</td><td class="mdescRight">Get the centroid structure of the ensemble.  <a href="group__centroid__fold.html#gacdabece4aa1e20c9eaa97acb4c4dcc38"></a><br/></td></tr>
 115 <tr><td class="memItemLeft" align="right" valign="top">double&nbsp;</td><td class="memItemRight" valign="bottom"><a class="el" href="group__pf__fold.html#ga79cbc375af65f11609feb6b055269e7d">mean_bp_distance</a> (int length)</td></tr>
 116 <tr><td class="mdescLeft">&nbsp;</td><td class="mdescRight">Get the mean base pair distance of the last partition function computation.  <a href="group__pf__fold.html#ga79cbc375af65f11609feb6b055269e7d"></a><br/></td></tr>
 117 <tr><td class="memItemLeft" align="right" valign="top">double&nbsp;</td><td class="memItemRight" valign="bottom"><a class="el" href="group__pf__fold.html#ga72d84525f0afd3a9d60d830a2f501fa5">mean_bp_distance_pr</a> (int length, double *<a class="el" href="fold__vars_8h.html#a0f5757427fd5f2f79d6fca0081cd5a52">pr</a>)</td></tr>
 118 <tr><td class="mdescLeft">&nbsp;</td><td class="mdescRight">Get the mean base pair distance in the thermodynamic ensemble.  <a href="group__pf__fold.html#ga72d84525f0afd3a9d60d830a2f501fa5"></a><br/></td></tr>
 119 <tr><td class="memItemLeft" align="right" valign="top"><a class="anchor" id="a1f562d463c14d4703d9656056200eb38"></a><!-- doxytag: member="part_func.h::bppm_to_structure" ref="a1f562d463c14d4703d9656056200eb38" args="(char *structure, double *pr, unsigned int length)" -->
 120 void&nbsp;</td><td class="memItemRight" valign="bottom"><a class="el" href="part__func_8h.html#a1f562d463c14d4703d9656056200eb38">bppm_to_structure</a> (char *structure, double *<a class="el" href="fold__vars_8h.html#a0f5757427fd5f2f79d6fca0081cd5a52">pr</a>, unsigned int length)</td></tr>
 121 <tr><td class="mdescLeft">&nbsp;</td><td class="mdescRight">Create a dot-bracket like structure string from base pair probability matrix. <br/></td></tr>
 122 <tr><td class="memItemLeft" align="right" valign="top"><a class="anchor" id="a49962ad6242b8c628de6ca16bb831c1d"></a><!-- doxytag: member="part_func.h::bppm_symbol" ref="a49962ad6242b8c628de6ca16bb831c1d" args="(const float *x)" -->
 123 char&nbsp;</td><td class="memItemRight" valign="bottom"><a class="el" href="part__func_8h.html#a49962ad6242b8c628de6ca16bb831c1d">bppm_symbol</a> (const float *x)</td></tr>
 124 <tr><td class="mdescLeft">&nbsp;</td><td class="mdescRight">Get a pseudo dot bracket notation for a given probability information. <br/></td></tr>
 125 <tr><td class="memItemLeft" align="right" valign="top">void&nbsp;</td><td class="memItemRight" valign="bottom"><a class="el" href="part__func_8h.html#a15176e23eceeff8c7d14eabcfec8a2af">init_pf_fold</a> (int length)</td></tr>
 126 <tr><td class="mdescLeft">&nbsp;</td><td class="mdescRight">Allocate space for <a class="el" href="group__pf__fold.html#gadc3db3d98742427e7001a7fd36ef28c2" title="Compute the partition function  of an RNA sequence.">pf_fold()</a>.  <a href="#a15176e23eceeff8c7d14eabcfec8a2af"></a><br/></td></tr>
 127 <tr><td class="memItemLeft" align="right" valign="top">char *&nbsp;</td><td class="memItemRight" valign="bottom"><a class="el" href="part__func_8h.html#ae89a63bd83e75a80b2ba36d20b31ce81">centroid</a> (int length, double *dist)</td></tr>
 128 <tr><td class="memItemLeft" align="right" valign="top">double&nbsp;</td><td class="memItemRight" valign="bottom"><a class="el" href="part__func_8h.html#ae9556ba7ded44fe2321b6f67c3fc02a3">mean_bp_dist</a> (int length)</td></tr>
 129 <tr><td class="memItemLeft" align="right" valign="top">double&nbsp;</td><td class="memItemRight" valign="bottom"><a class="el" href="part__func_8h.html#a68ba6f3a48e08ca131ab54621ce3a2d7">expLoopEnergy</a> (int u1, int u2, int type, int type2, short si1, short sj1, short sp1, short sq1)</td></tr>
 130 <tr><td class="memItemLeft" align="right" valign="top">double&nbsp;</td><td class="memItemRight" valign="bottom"><a class="el" href="part__func_8h.html#a7b6ab474cc80accc48010ccfcc59f96b">expHairpinEnergy</a> (int u, int type, short si1, short sj1, const char *string)</td></tr>
 131 <tr><td colspan="2"><h2>Variables</h2></td></tr>
 132 <tr><td class="memItemLeft" align="right" valign="top">int&nbsp;</td><td class="memItemRight" valign="bottom"><a class="el" href="group__subopt__stochbt.html#gacd79b1a570e6ad9be24cb11fe8cae30a">st_back</a></td></tr>
 133 <tr><td class="mdescLeft">&nbsp;</td><td class="mdescRight">Flag indicating that auxilary arrays are needed throughout the computations. This is essential for stochastic backtracking.  <a href="group__subopt__stochbt.html#gacd79b1a570e6ad9be24cb11fe8cae30a"></a><br/></td></tr>
 134 </table>
 135 <hr/><a name="_details"></a><h2>Detailed Description</h2>
 136 <p>Partition function of single RNA sequences. </p>
 137 <p>This file includes (almost) all function declarations within the <b>RNAlib</b> that are related to Partion function folding... </p>
 138 <hr/><h2>Function Documentation</h2>
 139 <a class="anchor" id="a15176e23eceeff8c7d14eabcfec8a2af"></a><!-- doxytag: member="part_func.h::init_pf_fold" ref="a15176e23eceeff8c7d14eabcfec8a2af" args="(int length)" -->
 140 <div class="memitem">
 141 <div class="memproto">
 142       <table class="memname">
 143         <tr>
 144           <td class="memname">void init_pf_fold </td>
 145           <td>(</td>
 146           <td class="paramtype">int&nbsp;</td>
 147           <td class="paramname"> <em>length</em></td>
 148           <td>&nbsp;)&nbsp;</td>
 149           <td></td>
 150         </tr>
 151       </table>
 152 </div>
 153 <div class="memdoc">
 154
 155 <p>Allocate space for <a class="el" href="group__pf__fold.html#gadc3db3d98742427e7001a7fd36ef28c2" title="Compute the partition function  of an RNA sequence.">pf_fold()</a>. </p>
 156 <dl class="deprecated"><dt><b><a class="el" href="deprecated.html#_deprecated000011">Deprecated:</a></b></dt><dd>This function is obsolete and will be removed soon! </dd></dl>
 157
 158 </div>
 159 </div>
 160 <a class="anchor" id="ae89a63bd83e75a80b2ba36d20b31ce81"></a><!-- doxytag: member="part_func.h::centroid" ref="ae89a63bd83e75a80b2ba36d20b31ce81" args="(int length, double *dist)" -->
 161 <div class="memitem">
 162 <div class="memproto">
 163       <table class="memname">
 164         <tr>
 165           <td class="memname">char* centroid </td>
 166           <td>(</td>
 167           <td class="paramtype">int&nbsp;</td>
 168           <td class="paramname"> <em>length</em>, </td>
 169         </tr>
 170         <tr>
 171           <td class="paramkey"></td>
 172           <td></td>
 173           <td class="paramtype">double *&nbsp;</td>
 174           <td class="paramname"> <em>dist</em></td><td>&nbsp;</td>
 175         </tr>
 176         <tr>
 177           <td></td>
 178           <td>)</td>
 179           <td></td><td></td><td></td>
 180         </tr>
 181       </table>
 182 </div>
 183 <div class="memdoc">
 184 <dl class="deprecated"><dt><b><a class="el" href="deprecated.html#_deprecated000012">Deprecated:</a></b></dt><dd>This function is deprecated and should not be used anymore as it is not threadsafe! </dd></dl>
 185 <dl class="see"><dt><b>See also:</b></dt><dd><a class="el" href="group__centroid__fold.html#ga9aba0ba1433a6d259331e0fe9fc4a9a6" title="Get the centroid structure of the ensemble.">get_centroid_struct_pl()</a>, <a class="el" href="group__centroid__fold.html#gacdabece4aa1e20c9eaa97acb4c4dcc38" title="Get the centroid structure of the ensemble.">get_centroid_struct_pr()</a> </dd></dl>
 186
 187 </div>
 188 </div>
 189 <a class="anchor" id="ae9556ba7ded44fe2321b6f67c3fc02a3"></a><!-- doxytag: member="part_func.h::mean_bp_dist" ref="ae9556ba7ded44fe2321b6f67c3fc02a3" args="(int length)" -->
 190 <div class="memitem">
 191 <div class="memproto">
 192       <table class="memname">
 193         <tr>
 194           <td class="memname">double mean_bp_dist </td>
 195           <td>(</td>
 196           <td class="paramtype">int&nbsp;</td>
 197           <td class="paramname"> <em>length</em></td>
 198           <td>&nbsp;)&nbsp;</td>
 199           <td></td>
 200         </tr>
 201       </table>
 202 </div>
 203 <div class="memdoc">
 204 <p>get the mean pair distance of ensemble</p>
 205 <dl class="deprecated"><dt><b><a class="el" href="deprecated.html#_deprecated000013">Deprecated:</a></b></dt><dd>This function is not threadsafe and should not be used anymore. Use <a class="el" href="group__pf__fold.html#ga79cbc375af65f11609feb6b055269e7d">mean_bp_distance()</a> instead! </dd></dl>
 206
 207 </div>
 208 </div>
 209 <a class="anchor" id="a68ba6f3a48e08ca131ab54621ce3a2d7"></a><!-- doxytag: member="part_func.h::expLoopEnergy" ref="a68ba6f3a48e08ca131ab54621ce3a2d7" args="(int u1, int u2, int type, int type2, short si1, short sj1, short sp1, short sq1)" -->
 210 <div class="memitem">
 211 <div class="memproto">
 212       <table class="memname">
 213         <tr>
 214           <td class="memname">double expLoopEnergy </td>
 215           <td>(</td>
 216           <td class="paramtype">int&nbsp;</td>
 217           <td class="paramname"> <em>u1</em>, </td>
 218         </tr>
 219         <tr>
 220           <td class="paramkey"></td>
 221           <td></td>
 222           <td class="paramtype">int&nbsp;</td>
 223           <td class="paramname"> <em>u2</em>, </td>
 224         </tr>
 225         <tr>
 226           <td class="paramkey"></td>
 227           <td></td>
 228           <td class="paramtype">int&nbsp;</td>
 229           <td class="paramname"> <em>type</em>, </td>
 230         </tr>
 231         <tr>
 232           <td class="paramkey"></td>
 233           <td></td>
 234           <td class="paramtype">int&nbsp;</td>
 235           <td class="paramname"> <em>type2</em>, </td>
 236         </tr>
 237         <tr>
 238           <td class="paramkey"></td>
 239           <td></td>
 240           <td class="paramtype">short&nbsp;</td>
 241           <td class="paramname"> <em>si1</em>, </td>
 242         </tr>
 243         <tr>
 244           <td class="paramkey"></td>
 245           <td></td>
 246           <td class="paramtype">short&nbsp;</td>
 247           <td class="paramname"> <em>sj1</em>, </td>
 248         </tr>
 249         <tr>
 250           <td class="paramkey"></td>
 251           <td></td>
 252           <td class="paramtype">short&nbsp;</td>
 253           <td class="paramname"> <em>sp1</em>, </td>
 254         </tr>
 255         <tr>
 256           <td class="paramkey"></td>
 257           <td></td>
 258           <td class="paramtype">short&nbsp;</td>
 259           <td class="paramname"> <em>sq1</em></td><td>&nbsp;</td>
 260         </tr>
 261         <tr>
 262           <td></td>
 263           <td>)</td>
 264           <td></td><td></td><td></td>
 265         </tr>
 266       </table>
 267 </div>
 268 <div class="memdoc">
 269 <dl class="deprecated"><dt><b><a class="el" href="deprecated.html#_deprecated000014">Deprecated:</a></b></dt><dd>Use <a class="el" href="loop__energies_8h.html#aa5e98e524e2a41e290b942b09544bc9e">exp_E_IntLoop()</a> from <a class="el" href="loop__energies_8h.html" title="Energy evaluation for MFE and partition function calculations.">loop_energies.h</a> instead </dd></dl>
 270
 271 </div>
 272 </div>
 273 <a class="anchor" id="a7b6ab474cc80accc48010ccfcc59f96b"></a><!-- doxytag: member="part_func.h::expHairpinEnergy" ref="a7b6ab474cc80accc48010ccfcc59f96b" args="(int u, int type, short si1, short sj1, const char *string)" -->
 274 <div class="memitem">
 275 <div class="memproto">
 276       <table class="memname">
 277         <tr>
 278           <td class="memname">double expHairpinEnergy </td>
 279           <td>(</td>
 280           <td class="paramtype">int&nbsp;</td>
 281           <td class="paramname"> <em>u</em>, </td>
 282         </tr>
 283         <tr>
 284           <td class="paramkey"></td>
 285           <td></td>
 286           <td class="paramtype">int&nbsp;</td>
 287           <td class="paramname"> <em>type</em>, </td>
 288         </tr>
 289         <tr>
 290           <td class="paramkey"></td>
 291           <td></td>
 292           <td class="paramtype">short&nbsp;</td>
 293           <td class="paramname"> <em>si1</em>, </td>
 294         </tr>
 295         <tr>
 296           <td class="paramkey"></td>
 297           <td></td>
 298           <td class="paramtype">short&nbsp;</td>
 299           <td class="paramname"> <em>sj1</em>, </td>
 300         </tr>
 301         <tr>
 302           <td class="paramkey"></td>
 303           <td></td>
 304           <td class="paramtype">const char *&nbsp;</td>
 305           <td class="paramname"> <em>string</em></td><td>&nbsp;</td>
 306         </tr>
 307         <tr>
 308           <td></td>
 309           <td>)</td>
 310           <td></td><td></td><td></td>
 311         </tr>
 312       </table>
 313 </div>
 314 <div class="memdoc">
 315 <dl class="deprecated"><dt><b><a class="el" href="deprecated.html#_deprecated000015">Deprecated:</a></b></dt><dd>Use <a class="el" href="loop__energies_8h.html#a0e128184bb097dc2da33706f33b555a6">exp_E_Hairpin()</a> from <a class="el" href="loop__energies_8h.html" title="Energy evaluation for MFE and partition function calculations.">loop_energies.h</a> instead </dd></dl>
 316
 317 </div>
 318 </div>
 319 </div>
 320 <hr size="1"/><address style="text-align: right;"><small>Generated on 11 Apr 2017 for RNAlib-2.1.2 by&nbsp;
 321 <a href="http://www.doxygen.org/index.html">
 322 <img class="footer" src="doxygen.png" alt="doxygen"/></a> 1.6.1 </small></address>
 323 </body>
 324 </html>