binaries/src/ViennaRNA/doc/latex/svm__utils_8h_source.tex

   1 \hypertarget{svm__utils_8h}{\section{svm\-\_\-utils.\-h}
   2 \label{svm__utils_8h}\index{/home/asherstnev/\-Projects/\-Java.\-projects/jabaws/secure-\/git/develop/binaries/src/\-Vienna\-R\-N\-A/\-H/svm\-\_\-utils.\-h@{/home/asherstnev/\-Projects/\-Java.\-projects/jabaws/secure-\/git/develop/binaries/src/\-Vienna\-R\-N\-A/\-H/svm\-\_\-utils.\-h}}
   3 }
   4
   5 \begin{DoxyCode}
   6 00001 \textcolor{preprocessor}{#ifndef \_\_VIENNA\_RNA\_PACKAGE\_SUBOPT\_H\_\_}
   7 00002 \textcolor{preprocessor}{}\textcolor{preprocessor}{#define \_\_VIENNA\_RNA\_PACKAGE\_SUBOPT\_H\_\_}
   8 00003 \textcolor{preprocessor}{}
   9 \hypertarget{svm__utils_8h_source_l00004}{}\hyperlink{structsvm__model}{00004} \textcolor{keyword}{typedef} \textcolor{keyword}{struct }\hyperlink{structsvm__model}{svm\_model}\{
  10 00005   \textcolor{keyword}{struct }svm\_parameter param;
  11 00006   \textcolor{keywordtype}{int} nr\_class;
  12 00007   \textcolor{keywordtype}{int} l;
  13 00008   \textcolor{keyword}{struct }svm\_node **SV;
  14 00009   \textcolor{keywordtype}{double} **sv\_coef;
  15 00010   \textcolor{keywordtype}{double} *rho;
  16 00011   \textcolor{keywordtype}{double} *probA;
  17 00012   \textcolor{keywordtype}{double} *probB;
  18 00013   \textcolor{keywordtype}{int} *label;
  19 00014   \textcolor{keywordtype}{int} *nSV;
  20 00015   \textcolor{keywordtype}{int} free\_sv;
  21 00016 \} \hyperlink{structsvm__model}{svm\_model};
  22 00017
  23 00018 \textcolor{keyword}{extern}  \textcolor{keywordtype}{char} *avg\_model\_string;
  24 00019 \textcolor{keyword}{extern}  \textcolor{keywordtype}{char} *sd\_model\_string;
  25 00020
  26 00021 \textcolor{keywordtype}{float}     get\_z(\textcolor{keywordtype}{char} *sequence,
  27 00022                 \textcolor{keywordtype}{double} energy);
  28 00023 \textcolor{keywordtype}{double}    avg\_regression (\textcolor{keywordtype}{int} N,
  29 00024                           \textcolor{keywordtype}{int} A,
  30 00025                           \textcolor{keywordtype}{int} C,
  31 00026                           \textcolor{keywordtype}{int} G,
  32 00027                           \textcolor{keywordtype}{int} T,
  33 00028                           \textcolor{keyword}{struct} \hyperlink{structsvm__model}{svm\_model} *avg\_model,
  34 00029                           \textcolor{keywordtype}{int} *info );
  35 00030 \textcolor{keywordtype}{double}    sd\_regression  (\textcolor{keywordtype}{int} N,
  36 00031                           \textcolor{keywordtype}{int} A,
  37 00032                           \textcolor{keywordtype}{int} C,
  38 00033                           \textcolor{keywordtype}{int} G,
  39 00034                           \textcolor{keywordtype}{int} T,
  40 00035                           \textcolor{keyword}{struct} \hyperlink{structsvm__model}{svm\_model}  *sd\_model);
  41 00036 \textcolor{keywordtype}{double}    minimal\_sd     (\textcolor{keywordtype}{int} N,
  42 00037                           \textcolor{keywordtype}{int} A,
  43 00038                           \textcolor{keywordtype}{int} C,
  44 00039                           \textcolor{keywordtype}{int} G,
  45 00040                           \textcolor{keywordtype}{int} T);
  46 00041 \hyperlink{structsvm__model}{svm\_model} *svm\_load\_model\_string(\textcolor{keywordtype}{char} *modelString);
  47 00042 \textcolor{keywordtype}{int}       *get\_seq\_composition( \textcolor{keywordtype}{short} *S,
  48 00043                                 \textcolor{keywordtype}{unsigned} \textcolor{keywordtype}{int} start,
  49 00044                                 \textcolor{keywordtype}{unsigned} \textcolor{keywordtype}{int} stop);
  50 00045
  51 00046 \textcolor{preprocessor}{#endif}
  52 \end{DoxyCode}