binaries/src/clustalw/src/.deps/Clustal.Po

   1 Clustal.o Clustal.o: Clustal.cpp config.h \
   2   /usr/lib/gcc/x86_64-redhat-linux/4.1.2/../../../../include/c++/4.1.2/iostream \
   3   /usr/lib/gcc/x86_64-redhat-linux/4.1.2/../../../../include/c++/4.1.2/x86_64-redhat-linux/bits/c++config.h \
   4   /usr/include/bits/wordsize.h \
   5   /usr/lib/gcc/x86_64-redhat-linux/4.1.2/../../../../include/c++/4.1.2/x86_64-redhat-linux/bits/os_defines.h \
   6   /usr/include/features.h /usr/include/sys/cdefs.h \
   7   /usr/include/gnu/stubs.h /usr/include/gnu/stubs-64.h \
   8   /usr/lib/gcc/x86_64-redhat-linux/4.1.2/../../../../include/c++/4.1.2/x86_64-redhat-linux/bits/cpu_defines.h \
   9   /usr/lib/gcc/x86_64-redhat-linux/4.1.2/../../../../include/c++/4.1.2/ostream \
  10   /usr/lib/gcc/x86_64-redhat-linux/4.1.2/../../../../include/c++/4.1.2/ios \
  11   /usr/lib/gcc/x86_64-redhat-linux/4.1.2/../../../../include/c++/4.1.2/iosfwd \
  12   /usr/lib/gcc/x86_64-redhat-linux/4.1.2/../../../../include/c++/4.1.2/x86_64-redhat-linux/bits/c++locale.h \
  13   /usr/lib/gcc/x86_64-redhat-linux/4.1.2/../../../../include/c++/4.1.2/cstring \
  14   /usr/lib/gcc/x86_64-redhat-linux/4.1.2/../../../../include/c++/4.1.2/cstddef \
  15   /usr/lib/gcc/x86_64-redhat-linux/4.1.2/include/stddef.h \
  16   /usr/include/string.h /usr/include/xlocale.h \
  17   /usr/lib/gcc/x86_64-redhat-linux/4.1.2/../../../../include/c++/4.1.2/cstdio \
  18   /usr/include/stdio.h /usr/include/bits/types.h \
  19   /usr/include/bits/typesizes.h /usr/include/libio.h \
  20   /usr/include/_G_config.h /usr/include/wchar.h /usr/include/bits/wchar.h \
  21   /usr/include/gconv.h \
  22   /usr/lib/gcc/x86_64-redhat-linux/4.1.2/include/stdarg.h \
  23   /usr/include/bits/stdio_lim.h /usr/include/bits/sys_errlist.h \
  24   /usr/include/bits/stdio.h \
  25   /usr/lib/gcc/x86_64-redhat-linux/4.1.2/../../../../include/c++/4.1.2/clocale \
  26   /usr/include/locale.h /usr/include/bits/locale.h \
  27   /usr/include/langinfo.h /usr/include/nl_types.h /usr/include/iconv.h \
  28   /usr/include/libintl.h \
  29   /usr/lib/gcc/x86_64-redhat-linux/4.1.2/../../../../include/c++/4.1.2/x86_64-redhat-linux/bits/c++io.h \
  30   /usr/lib/gcc/x86_64-redhat-linux/4.1.2/../../../../include/c++/4.1.2/x86_64-redhat-linux/bits/gthr.h \
  31   /usr/lib/gcc/x86_64-redhat-linux/4.1.2/../../../../include/c++/4.1.2/x86_64-redhat-linux/bits/gthr-default.h \
  32   /usr/include/pthread.h /usr/include/endian.h /usr/include/bits/endian.h \
  33   /usr/include/sched.h /usr/include/time.h /usr/include/bits/sched.h \
  34   /usr/include/bits/time.h /usr/include/signal.h \
  35   /usr/include/bits/sigset.h /usr/include/bits/pthreadtypes.h \
  36   /usr/include/bits/setjmp.h /usr/include/unistd.h \
  37   /usr/include/bits/posix_opt.h /usr/include/bits/environments.h \
  38   /usr/include/bits/confname.h /usr/include/getopt.h \
  39   /usr/lib/gcc/x86_64-redhat-linux/4.1.2/../../../../include/c++/4.1.2/cctype \
  40   /usr/include/ctype.h \
  41   /usr/lib/gcc/x86_64-redhat-linux/4.1.2/../../../../include/c++/4.1.2/bits/stringfwd.h \
  42   /usr/lib/gcc/x86_64-redhat-linux/4.1.2/../../../../include/c++/4.1.2/bits/postypes.h \
  43   /usr/lib/gcc/x86_64-redhat-linux/4.1.2/../../../../include/c++/4.1.2/cwchar \
  44   /usr/lib/gcc/x86_64-redhat-linux/4.1.2/../../../../include/c++/4.1.2/ctime \
  45   /usr/include/stdint.h \
  46   /usr/lib/gcc/x86_64-redhat-linux/4.1.2/../../../../include/c++/4.1.2/bits/functexcept.h \
  47   /usr/lib/gcc/x86_64-redhat-linux/4.1.2/../../../../include/c++/4.1.2/exception_defines.h \
  48   /usr/lib/gcc/x86_64-redhat-linux/4.1.2/../../../../include/c++/4.1.2/exception \
  49   /usr/lib/gcc/x86_64-redhat-linux/4.1.2/../../../../include/c++/4.1.2/bits/char_traits.h \
  50   /usr/lib/gcc/x86_64-redhat-linux/4.1.2/../../../../include/c++/4.1.2/bits/stl_algobase.h \
  51   /usr/lib/gcc/x86_64-redhat-linux/4.1.2/../../../../include/c++/4.1.2/climits \
  52   /usr/lib/gcc/x86_64-redhat-linux/4.1.2/include/limits.h \
  53   /usr/lib/gcc/x86_64-redhat-linux/4.1.2/include/syslimits.h \
  54   /usr/include/limits.h /usr/include/bits/posix1_lim.h \
  55   /usr/include/bits/local_lim.h /usr/include/linux/limits.h \
  56   /usr/include/bits/posix2_lim.h /usr/include/bits/xopen_lim.h \
  57   /usr/lib/gcc/x86_64-redhat-linux/4.1.2/../../../../include/c++/4.1.2/cstdlib \
  58   /usr/include/stdlib.h /usr/include/bits/waitflags.h \
  59   /usr/include/bits/waitstatus.h /usr/include/sys/types.h \
  60   /usr/include/sys/select.h /usr/include/bits/select.h \
  61   /usr/include/sys/sysmacros.h /usr/include/alloca.h \
  62   /usr/lib/gcc/x86_64-redhat-linux/4.1.2/../../../../include/c++/4.1.2/bits/stl_pair.h \
  63   /usr/lib/gcc/x86_64-redhat-linux/4.1.2/../../../../include/c++/4.1.2/bits/cpp_type_traits.h \
  64   /usr/lib/gcc/x86_64-redhat-linux/4.1.2/../../../../include/c++/4.1.2/bits/stl_iterator_base_types.h \
  65   /usr/lib/gcc/x86_64-redhat-linux/4.1.2/../../../../include/c++/4.1.2/bits/stl_iterator_base_funcs.h \
  66   /usr/lib/gcc/x86_64-redhat-linux/4.1.2/../../../../include/c++/4.1.2/bits/concept_check.h \
  67   /usr/lib/gcc/x86_64-redhat-linux/4.1.2/../../../../include/c++/4.1.2/bits/stl_iterator.h \
  68   /usr/lib/gcc/x86_64-redhat-linux/4.1.2/../../../../include/c++/4.1.2/debug/debug.h \
  69   /usr/lib/gcc/x86_64-redhat-linux/4.1.2/../../../../include/c++/4.1.2/bits/localefwd.h \
  70   /usr/lib/gcc/x86_64-redhat-linux/4.1.2/../../../../include/c++/4.1.2/bits/ios_base.h \
  71   /usr/lib/gcc/x86_64-redhat-linux/4.1.2/../../../../include/c++/4.1.2/bits/atomicity.h \
  72   /usr/lib/gcc/x86_64-redhat-linux/4.1.2/../../../../include/c++/4.1.2/x86_64-redhat-linux/bits/atomic_word.h \
  73   /usr/lib/gcc/x86_64-redhat-linux/4.1.2/../../../../include/c++/4.1.2/bits/locale_classes.h \
  74   /usr/lib/gcc/x86_64-redhat-linux/4.1.2/../../../../include/c++/4.1.2/string \
  75   /usr/lib/gcc/x86_64-redhat-linux/4.1.2/../../../../include/c++/4.1.2/memory \
  76   /usr/lib/gcc/x86_64-redhat-linux/4.1.2/../../../../include/c++/4.1.2/bits/allocator.h \
  77   /usr/lib/gcc/x86_64-redhat-linux/4.1.2/../../../../include/c++/4.1.2/x86_64-redhat-linux/bits/c++allocator.h \
  78   /usr/lib/gcc/x86_64-redhat-linux/4.1.2/../../../../include/c++/4.1.2/ext/new_allocator.h \
  79   /usr/lib/gcc/x86_64-redhat-linux/4.1.2/../../../../include/c++/4.1.2/new \
  80   /usr/lib/gcc/x86_64-redhat-linux/4.1.2/../../../../include/c++/4.1.2/bits/stl_construct.h \
  81   /usr/lib/gcc/x86_64-redhat-linux/4.1.2/../../../../include/c++/4.1.2/bits/stl_uninitialized.h \
  82   /usr/lib/gcc/x86_64-redhat-linux/4.1.2/../../../../include/c++/4.1.2/bits/stl_raw_storage_iter.h \
  83   /usr/lib/gcc/x86_64-redhat-linux/4.1.2/../../../../include/c++/4.1.2/limits \
  84   /usr/lib/gcc/x86_64-redhat-linux/4.1.2/../../../../include/c++/4.1.2/bits/stl_function.h \
  85   /usr/lib/gcc/x86_64-redhat-linux/4.1.2/../../../../include/c++/4.1.2/bits/basic_string.h \
  86   /usr/lib/gcc/x86_64-redhat-linux/4.1.2/../../../../include/c++/4.1.2/algorithm \
  87   /usr/lib/gcc/x86_64-redhat-linux/4.1.2/../../../../include/c++/4.1.2/bits/stl_algo.h \
  88   /usr/lib/gcc/x86_64-redhat-linux/4.1.2/../../../../include/c++/4.1.2/bits/stl_heap.h \
  89   /usr/lib/gcc/x86_64-redhat-linux/4.1.2/../../../../include/c++/4.1.2/bits/stl_tempbuf.h \
  90   /usr/lib/gcc/x86_64-redhat-linux/4.1.2/../../../../include/c++/4.1.2/bits/basic_string.tcc \
  91   /usr/lib/gcc/x86_64-redhat-linux/4.1.2/../../../../include/c++/4.1.2/streambuf \
  92   /usr/lib/gcc/x86_64-redhat-linux/4.1.2/../../../../include/c++/4.1.2/bits/streambuf.tcc \
  93   /usr/lib/gcc/x86_64-redhat-linux/4.1.2/../../../../include/c++/4.1.2/bits/basic_ios.h \
  94   /usr/lib/gcc/x86_64-redhat-linux/4.1.2/../../../../include/c++/4.1.2/bits/streambuf_iterator.h \
  95   /usr/lib/gcc/x86_64-redhat-linux/4.1.2/../../../../include/c++/4.1.2/bits/locale_facets.h \
  96   /usr/lib/gcc/x86_64-redhat-linux/4.1.2/../../../../include/c++/4.1.2/cwctype \
  97   /usr/include/wctype.h \
  98   /usr/lib/gcc/x86_64-redhat-linux/4.1.2/../../../../include/c++/4.1.2/x86_64-redhat-linux/bits/ctype_base.h \
  99   /usr/lib/gcc/x86_64-redhat-linux/4.1.2/../../../../include/c++/4.1.2/x86_64-redhat-linux/bits/ctype_inline.h \
 100   /usr/lib/gcc/x86_64-redhat-linux/4.1.2/../../../../include/c++/4.1.2/bits/codecvt.h \
 101   /usr/lib/gcc/x86_64-redhat-linux/4.1.2/../../../../include/c++/4.1.2/x86_64-redhat-linux/bits/time_members.h \
 102   /usr/lib/gcc/x86_64-redhat-linux/4.1.2/../../../../include/c++/4.1.2/x86_64-redhat-linux/bits/messages_members.h \
 103   /usr/lib/gcc/x86_64-redhat-linux/4.1.2/../../../../include/c++/4.1.2/bits/basic_ios.tcc \
 104   /usr/lib/gcc/x86_64-redhat-linux/4.1.2/../../../../include/c++/4.1.2/bits/ostream.tcc \
 105   /usr/lib/gcc/x86_64-redhat-linux/4.1.2/../../../../include/c++/4.1.2/locale \
 106   /usr/lib/gcc/x86_64-redhat-linux/4.1.2/../../../../include/c++/4.1.2/bits/locale_facets.tcc \
 107   /usr/lib/gcc/x86_64-redhat-linux/4.1.2/../../../../include/c++/4.1.2/typeinfo \
 108   /usr/lib/gcc/x86_64-redhat-linux/4.1.2/../../../../include/c++/4.1.2/istream \
 109   /usr/lib/gcc/x86_64-redhat-linux/4.1.2/../../../../include/c++/4.1.2/bits/istream.tcc \
 110   /usr/lib/gcc/x86_64-redhat-linux/4.1.2/../../../../include/c++/4.1.2/fstream \
 111   /usr/lib/gcc/x86_64-redhat-linux/4.1.2/../../../../include/c++/4.1.2/x86_64-redhat-linux/bits/basic_file.h \
 112   /usr/lib/gcc/x86_64-redhat-linux/4.1.2/../../../../include/c++/4.1.2/bits/fstream.tcc \
 113   Clustal.h general/clustalw.h general/general.h general/Array2D.h \
 114   /usr/lib/gcc/x86_64-redhat-linux/4.1.2/../../../../include/c++/4.1.2/vector \
 115   /usr/lib/gcc/x86_64-redhat-linux/4.1.2/../../../../include/c++/4.1.2/bits/stl_vector.h \
 116   /usr/lib/gcc/x86_64-redhat-linux/4.1.2/../../../../include/c++/4.1.2/bits/stl_bvector.h \
 117   /usr/lib/gcc/x86_64-redhat-linux/4.1.2/../../../../include/c++/4.1.2/bits/vector.tcc \
 118   general/SquareMat.h \
 119   /usr/lib/gcc/x86_64-redhat-linux/4.1.2/../../../../include/c++/4.1.2/iomanip \
 120   /usr/lib/gcc/x86_64-redhat-linux/4.1.2/../../../../include/c++/4.1.2/functional \
 121   general/SymMatrix.h \
 122   /usr/lib/gcc/x86_64-redhat-linux/4.1.2/../../../../include/c++/4.1.2/cmath \
 123   /usr/include/math.h /usr/include/bits/huge_val.h \
 124   /usr/include/bits/huge_valf.h /usr/include/bits/huge_vall.h \
 125   /usr/include/bits/inf.h /usr/include/bits/nan.h \
 126   /usr/include/bits/mathdef.h /usr/include/bits/mathcalls.h \
 127   /usr/include/bits/mathinline.h \
 128   /usr/lib/gcc/x86_64-redhat-linux/4.1.2/../../../../include/c++/4.1.2/bits/cmath.tcc \
 129   /usr/lib/gcc/x86_64-redhat-linux/4.1.2/../../../../include/c++/4.1.2/stdexcept \
 130   general/utils.h general/Utility.h /usr/include/errno.h \
 131   /usr/include/bits/errno.h /usr/include/linux/errno.h \
 132   /usr/include/asm/errno.h /usr/include/asm-x86_64/errno.h \
 133   /usr/include/asm-generic/errno.h /usr/include/asm-generic/errno-base.h \
 134   general/clustalw.h general/userparams.h general/UserParameters.h \
 135   general/utils.h fileInput/FileReader.h \
 136   fileInput/../alignment/Alignment.h fileInput/../alignment/Sequence.h \
 137   fileInput/../alignment/../general/userparams.h \
 138   fileInput/../alignment/../general/utils.h \
 139   fileInput/../alignment/../substitutionMatrix/globalmatrix.h \
 140   fileInput/../alignment/../substitutionMatrix/SubMatrix.h \
 141   fileInput/../alignment/../substitutionMatrix/../general/clustalw.h \
 142   fileInput/../alignment/../substitutionMatrix/../general/userparams.h \
 143   fileInput/../alignment/../substitutionMatrix/../general/utils.h \
 144   fileInput/../alignment/../substitutionMatrix/../general/Array2D.h \
 145   fileInput/../alignment/../general/VectorOutOfRange.h \
 146   fileInput/../alignment/../general/SequenceNotFoundException.h \
 147   fileInput/../alignment/Sequence.h fileInput/../general/userparams.h \
 148   fileInput/../general/utils.h fileInput/FileParser.h \
 149   fileInput/InFileStream.h fileInput/ClustalFileParser.h \
 150   fileInput/PearsonFileParser.h fileInput/PIRFileParser.h \
 151   fileInput/GDEFileParser.h fileInput/MSFFileParser.h \
 152   fileInput/RSFFileParser.h fileInput/EMBLFileParser.h \
 153   alignment/Alignment.h alignment/AlignmentOutput.h \
 154   /usr/lib/gcc/x86_64-redhat-linux/4.1.2/../../../../include/c++/4.1.2/sstream \
 155   /usr/lib/gcc/x86_64-redhat-linux/4.1.2/../../../../include/c++/4.1.2/bits/sstream.tcc \
 156   /usr/lib/gcc/x86_64-redhat-linux/4.1.2/../../../../include/c++/4.1.2/cassert \
 157   /usr/include/assert.h alignment/Alignment.h \
 158   pairwise/FullPairwiseAlign.h pairwise/PairwiseAlignBase.h \
 159   pairwise/../alignment/Alignment.h pairwise/FastPairwiseAlign.h \
 160   multipleAlign/MSA.h multipleAlign/ProfileBase.h \
 161   multipleAlign/../alignment/Alignment.h \
 162   multipleAlign/../tree/AlignmentSteps.h \
 163   multipleAlign/ProfileAlignAlgorithm.h \
 164   multipleAlign/LowScoreSegProfile.h multipleAlign/Iteration.h \
 165   multipleAlign/../general/clustalw.h tree/TreeInterface.h \
 166   tree/AlignmentSteps.h tree/../alignment/Alignment.h \
 167   tree/../general/clustalw.h general/debuglogObject.h general/DebugLog.h \
 168   general/statsObject.h general/Stats.h alignment/ObjectiveScore.h \
 169   alignment/../general/clustalw.h \
 170   alignment/../substitutionMatrix/globalmatrix.h \
 171   general/ClustalWResources.h Help.h
 172
 173 config.h:
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 175 /usr/lib/gcc/x86_64-redhat-linux/4.1.2/../../../../include/c++/4.1.2/iostream:
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 179 /usr/include/bits/wordsize.h:
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 253 /usr/lib/gcc/x86_64-redhat-linux/4.1.2/../../../../include/c++/4.1.2/x86_64-redhat-linux/bits/gthr.h:
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 255 /usr/lib/gcc/x86_64-redhat-linux/4.1.2/../../../../include/c++/4.1.2/x86_64-redhat-linux/bits/gthr-default.h:
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