binaries/src/clustalw/src/.deps/Clustal.Po

   1 Clustal.o: Clustal.cpp config.h \
   2  /usr/lib/gcc/x86_64-redhat-linux/4.4.7/../../../../include/c++/4.4.7/iostream \
   3  /usr/lib/gcc/x86_64-redhat-linux/4.4.7/../../../../include/c++/4.4.7/x86_64-redhat-linux/bits/c++config.h \
   4  /usr/include/bits/wordsize.h \
   5  /usr/lib/gcc/x86_64-redhat-linux/4.4.7/../../../../include/c++/4.4.7/x86_64-redhat-linux/bits/os_defines.h \
   6  /usr/include/features.h /usr/include/sys/cdefs.h \
   7  /usr/include/gnu/stubs.h /usr/include/gnu/stubs-64.h \
   8  /usr/lib/gcc/x86_64-redhat-linux/4.4.7/../../../../include/c++/4.4.7/x86_64-redhat-linux/bits/cpu_defines.h \
   9  /usr/lib/gcc/x86_64-redhat-linux/4.4.7/../../../../include/c++/4.4.7/ostream \
  10  /usr/lib/gcc/x86_64-redhat-linux/4.4.7/../../../../include/c++/4.4.7/ios \
  11  /usr/lib/gcc/x86_64-redhat-linux/4.4.7/../../../../include/c++/4.4.7/iosfwd \
  12  /usr/lib/gcc/x86_64-redhat-linux/4.4.7/../../../../include/c++/4.4.7/bits/stringfwd.h \
  13  /usr/lib/gcc/x86_64-redhat-linux/4.4.7/../../../../include/c++/4.4.7/bits/postypes.h \
  14  /usr/lib/gcc/x86_64-redhat-linux/4.4.7/../../../../include/c++/4.4.7/cwchar \
  15  /usr/lib/gcc/x86_64-redhat-linux/4.4.7/../../../../include/c++/4.4.7/cstddef \
  16  /usr/lib/gcc/x86_64-redhat-linux/4.4.7/include/stddef.h \
  17  /usr/include/wchar.h /usr/include/stdio.h \
  18  /usr/lib/gcc/x86_64-redhat-linux/4.4.7/include/stdarg.h \
  19  /usr/include/bits/wchar.h /usr/include/xlocale.h \
  20  /usr/lib/gcc/x86_64-redhat-linux/4.4.7/../../../../include/c++/4.4.7/exception \
  21  /usr/lib/gcc/x86_64-redhat-linux/4.4.7/../../../../include/c++/4.4.7/bits/char_traits.h \
  22  /usr/lib/gcc/x86_64-redhat-linux/4.4.7/../../../../include/c++/4.4.7/bits/stl_algobase.h \
  23  /usr/lib/gcc/x86_64-redhat-linux/4.4.7/../../../../include/c++/4.4.7/bits/functexcept.h \
  24  /usr/lib/gcc/x86_64-redhat-linux/4.4.7/../../../../include/c++/4.4.7/exception_defines.h \
  25  /usr/lib/gcc/x86_64-redhat-linux/4.4.7/../../../../include/c++/4.4.7/bits/cpp_type_traits.h \
  26  /usr/lib/gcc/x86_64-redhat-linux/4.4.7/../../../../include/c++/4.4.7/ext/type_traits.h \
  27  /usr/lib/gcc/x86_64-redhat-linux/4.4.7/../../../../include/c++/4.4.7/ext/numeric_traits.h \
  28  /usr/lib/gcc/x86_64-redhat-linux/4.4.7/../../../../include/c++/4.4.7/bits/stl_pair.h \
  29  /usr/lib/gcc/x86_64-redhat-linux/4.4.7/../../../../include/c++/4.4.7/bits/move.h \
  30  /usr/lib/gcc/x86_64-redhat-linux/4.4.7/../../../../include/c++/4.4.7/bits/concept_check.h \
  31  /usr/lib/gcc/x86_64-redhat-linux/4.4.7/../../../../include/c++/4.4.7/bits/stl_iterator_base_types.h \
  32  /usr/lib/gcc/x86_64-redhat-linux/4.4.7/../../../../include/c++/4.4.7/bits/stl_iterator_base_funcs.h \
  33  /usr/lib/gcc/x86_64-redhat-linux/4.4.7/../../../../include/c++/4.4.7/bits/stl_iterator.h \
  34  /usr/lib/gcc/x86_64-redhat-linux/4.4.7/../../../../include/c++/4.4.7/debug/debug.h \
  35  /usr/lib/gcc/x86_64-redhat-linux/4.4.7/../../../../include/c++/4.4.7/bits/localefwd.h \
  36  /usr/lib/gcc/x86_64-redhat-linux/4.4.7/../../../../include/c++/4.4.7/x86_64-redhat-linux/bits/c++locale.h \
  37  /usr/lib/gcc/x86_64-redhat-linux/4.4.7/../../../../include/c++/4.4.7/clocale \
  38  /usr/include/locale.h /usr/include/bits/locale.h \
  39  /usr/lib/gcc/x86_64-redhat-linux/4.4.7/../../../../include/c++/4.4.7/cctype \
  40  /usr/include/ctype.h /usr/include/bits/types.h \
  41  /usr/include/bits/typesizes.h /usr/include/endian.h \
  42  /usr/include/bits/endian.h /usr/include/bits/byteswap.h \
  43  /usr/lib/gcc/x86_64-redhat-linux/4.4.7/../../../../include/c++/4.4.7/bits/ios_base.h \
  44  /usr/lib/gcc/x86_64-redhat-linux/4.4.7/../../../../include/c++/4.4.7/ext/atomicity.h \
  45  /usr/lib/gcc/x86_64-redhat-linux/4.4.7/../../../../include/c++/4.4.7/x86_64-redhat-linux/bits/gthr.h \
  46  /usr/lib/gcc/x86_64-redhat-linux/4.4.7/../../../../include/c++/4.4.7/x86_64-redhat-linux/bits/gthr-default.h \
  47  /usr/include/pthread.h /usr/include/sched.h /usr/include/time.h \
  48  /usr/include/bits/sched.h /usr/include/bits/time.h \
  49  /usr/include/bits/pthreadtypes.h /usr/include/bits/setjmp.h \
  50  /usr/include/unistd.h /usr/include/bits/posix_opt.h \
  51  /usr/include/bits/environments.h /usr/include/bits/confname.h \
  52  /usr/include/getopt.h \
  53  /usr/lib/gcc/x86_64-redhat-linux/4.4.7/../../../../include/c++/4.4.7/x86_64-redhat-linux/bits/atomic_word.h \
  54  /usr/lib/gcc/x86_64-redhat-linux/4.4.7/../../../../include/c++/4.4.7/bits/locale_classes.h \
  55  /usr/lib/gcc/x86_64-redhat-linux/4.4.7/../../../../include/c++/4.4.7/string \
  56  /usr/lib/gcc/x86_64-redhat-linux/4.4.7/../../../../include/c++/4.4.7/bits/allocator.h \
  57  /usr/lib/gcc/x86_64-redhat-linux/4.4.7/../../../../include/c++/4.4.7/x86_64-redhat-linux/bits/c++allocator.h \
  58  /usr/lib/gcc/x86_64-redhat-linux/4.4.7/../../../../include/c++/4.4.7/ext/new_allocator.h \
  59  /usr/lib/gcc/x86_64-redhat-linux/4.4.7/../../../../include/c++/4.4.7/new \
  60  /usr/lib/gcc/x86_64-redhat-linux/4.4.7/../../../../include/c++/4.4.7/bits/ostream_insert.h \
  61  /usr/lib/gcc/x86_64-redhat-linux/4.4.7/../../../../include/c++/4.4.7/cxxabi-forced.h \
  62  /usr/lib/gcc/x86_64-redhat-linux/4.4.7/../../../../include/c++/4.4.7/bits/stl_function.h \
  63  /usr/lib/gcc/x86_64-redhat-linux/4.4.7/../../../../include/c++/4.4.7/backward/binders.h \
  64  /usr/lib/gcc/x86_64-redhat-linux/4.4.7/../../../../include/c++/4.4.7/bits/basic_string.h \
  65  /usr/lib/gcc/x86_64-redhat-linux/4.4.7/../../../../include/c++/4.4.7/initializer_list \
  66  /usr/lib/gcc/x86_64-redhat-linux/4.4.7/../../../../include/c++/4.4.7/bits/basic_string.tcc \
  67  /usr/lib/gcc/x86_64-redhat-linux/4.4.7/../../../../include/c++/4.4.7/bits/locale_classes.tcc \
  68  /usr/lib/gcc/x86_64-redhat-linux/4.4.7/../../../../include/c++/4.4.7/streambuf \
  69  /usr/lib/gcc/x86_64-redhat-linux/4.4.7/../../../../include/c++/4.4.7/bits/streambuf.tcc \
  70  /usr/lib/gcc/x86_64-redhat-linux/4.4.7/../../../../include/c++/4.4.7/bits/basic_ios.h \
  71  /usr/lib/gcc/x86_64-redhat-linux/4.4.7/../../../../include/c++/4.4.7/bits/locale_facets.h \
  72  /usr/lib/gcc/x86_64-redhat-linux/4.4.7/../../../../include/c++/4.4.7/cwctype \
  73  /usr/include/wctype.h \
  74  /usr/lib/gcc/x86_64-redhat-linux/4.4.7/../../../../include/c++/4.4.7/x86_64-redhat-linux/bits/ctype_base.h \
  75  /usr/lib/gcc/x86_64-redhat-linux/4.4.7/../../../../include/c++/4.4.7/bits/streambuf_iterator.h \
  76  /usr/lib/gcc/x86_64-redhat-linux/4.4.7/../../../../include/c++/4.4.7/x86_64-redhat-linux/bits/ctype_inline.h \
  77  /usr/lib/gcc/x86_64-redhat-linux/4.4.7/../../../../include/c++/4.4.7/bits/locale_facets.tcc \
  78  /usr/lib/gcc/x86_64-redhat-linux/4.4.7/../../../../include/c++/4.4.7/bits/basic_ios.tcc \
  79  /usr/lib/gcc/x86_64-redhat-linux/4.4.7/../../../../include/c++/4.4.7/bits/ostream.tcc \
  80  /usr/lib/gcc/x86_64-redhat-linux/4.4.7/../../../../include/c++/4.4.7/istream \
  81  /usr/lib/gcc/x86_64-redhat-linux/4.4.7/../../../../include/c++/4.4.7/bits/istream.tcc \
  82  /usr/lib/gcc/x86_64-redhat-linux/4.4.7/../../../../include/c++/4.4.7/fstream \
  83  /usr/lib/gcc/x86_64-redhat-linux/4.4.7/../../../../include/c++/4.4.7/bits/codecvt.h \
  84  /usr/lib/gcc/x86_64-redhat-linux/4.4.7/../../../../include/c++/4.4.7/cstdio \
  85  /usr/include/libio.h /usr/include/_G_config.h \
  86  /usr/include/bits/stdio_lim.h /usr/include/bits/sys_errlist.h \
  87  /usr/include/bits/stdio.h \
  88  /usr/lib/gcc/x86_64-redhat-linux/4.4.7/../../../../include/c++/4.4.7/x86_64-redhat-linux/bits/basic_file.h \
  89  /usr/lib/gcc/x86_64-redhat-linux/4.4.7/../../../../include/c++/4.4.7/x86_64-redhat-linux/bits/c++io.h \
  90  /usr/lib/gcc/x86_64-redhat-linux/4.4.7/../../../../include/c++/4.4.7/bits/fstream.tcc \
  91  Clustal.h general/clustalw.h general/general.h general/Array2D.h \
  92  /usr/lib/gcc/x86_64-redhat-linux/4.4.7/../../../../include/c++/4.4.7/vector \
  93  /usr/lib/gcc/x86_64-redhat-linux/4.4.7/../../../../include/c++/4.4.7/bits/stl_construct.h \
  94  /usr/lib/gcc/x86_64-redhat-linux/4.4.7/../../../../include/c++/4.4.7/bits/stl_uninitialized.h \
  95  /usr/lib/gcc/x86_64-redhat-linux/4.4.7/../../../../include/c++/4.4.7/bits/stl_vector.h \
  96  /usr/lib/gcc/x86_64-redhat-linux/4.4.7/../../../../include/c++/4.4.7/bits/stl_bvector.h \
  97  /usr/lib/gcc/x86_64-redhat-linux/4.4.7/../../../../include/c++/4.4.7/bits/vector.tcc \
  98  general/SquareMat.h \
  99  /usr/lib/gcc/x86_64-redhat-linux/4.4.7/../../../../include/c++/4.4.7/iomanip \
 100  general/SymMatrix.h \
 101  /usr/lib/gcc/x86_64-redhat-linux/4.4.7/../../../../include/c++/4.4.7/cmath \
 102  /usr/include/math.h /usr/include/bits/huge_val.h \
 103  /usr/include/bits/huge_valf.h /usr/include/bits/huge_vall.h \
 104  /usr/include/bits/inf.h /usr/include/bits/nan.h \
 105  /usr/include/bits/mathdef.h /usr/include/bits/mathcalls.h \
 106  /usr/include/bits/mathinline.h \
 107  /usr/lib/gcc/x86_64-redhat-linux/4.4.7/../../../../include/c++/4.4.7/bits/cmath.tcc \
 108  /usr/lib/gcc/x86_64-redhat-linux/4.4.7/../../../../include/c++/4.4.7/stdexcept \
 109  /usr/lib/gcc/x86_64-redhat-linux/4.4.7/../../../../include/c++/4.4.7/cstdlib \
 110  /usr/include/stdlib.h /usr/include/bits/waitflags.h \
 111  /usr/include/bits/waitstatus.h /usr/include/sys/types.h \
 112  /usr/include/sys/select.h /usr/include/bits/select.h \
 113  /usr/include/bits/sigset.h /usr/include/sys/sysmacros.h \
 114  /usr/include/alloca.h general/utils.h general/Utility.h \
 115  /usr/include/string.h /usr/include/errno.h /usr/include/bits/errno.h \
 116  /usr/include/linux/errno.h /usr/include/asm/errno.h \
 117  /usr/include/asm-generic/errno.h /usr/include/asm-generic/errno-base.h \
 118  general/clustalw.h general/userparams.h general/UserParameters.h \
 119  general/utils.h fileInput/FileReader.h \
 120  /usr/lib/gcc/x86_64-redhat-linux/4.4.7/../../../../include/c++/4.4.7/memory \
 121  /usr/lib/gcc/x86_64-redhat-linux/4.4.7/../../../../include/c++/4.4.7/bits/stl_tempbuf.h \
 122  /usr/lib/gcc/x86_64-redhat-linux/4.4.7/../../../../include/c++/4.4.7/bits/stl_raw_storage_iter.h \
 123  /usr/lib/gcc/x86_64-redhat-linux/4.4.7/../../../../include/c++/4.4.7/backward/auto_ptr.h \
 124  fileInput/../alignment/Alignment.h fileInput/../alignment/Sequence.h \
 125  fileInput/../alignment/../general/userparams.h \
 126  fileInput/../alignment/../general/utils.h \
 127  fileInput/../alignment/../substitutionMatrix/globalmatrix.h \
 128  fileInput/../alignment/../substitutionMatrix/SubMatrix.h \
 129  fileInput/../alignment/../substitutionMatrix/../general/clustalw.h \
 130  fileInput/../alignment/../substitutionMatrix/../general/userparams.h \
 131  fileInput/../alignment/../substitutionMatrix/../general/utils.h \
 132  fileInput/../alignment/../substitutionMatrix/../general/Array2D.h \
 133  fileInput/../alignment/../general/VectorOutOfRange.h \
 134  fileInput/../alignment/../general/SequenceNotFoundException.h \
 135  fileInput/../alignment/Sequence.h fileInput/../general/userparams.h \
 136  fileInput/../general/utils.h fileInput/FileParser.h \
 137  fileInput/InFileStream.h fileInput/ClustalFileParser.h \
 138  fileInput/PearsonFileParser.h fileInput/PIRFileParser.h \
 139  fileInput/GDEFileParser.h fileInput/MSFFileParser.h \
 140  fileInput/RSFFileParser.h fileInput/EMBLFileParser.h \
 141  alignment/Alignment.h alignment/AlignmentOutput.h \
 142  /usr/lib/gcc/x86_64-redhat-linux/4.4.7/../../../../include/c++/4.4.7/sstream \
 143  /usr/lib/gcc/x86_64-redhat-linux/4.4.7/../../../../include/c++/4.4.7/bits/sstream.tcc \
 144  /usr/lib/gcc/x86_64-redhat-linux/4.4.7/../../../../include/c++/4.4.7/cassert \
 145  /usr/include/assert.h alignment/Alignment.h pairwise/FullPairwiseAlign.h \
 146  pairwise/PairwiseAlignBase.h pairwise/../alignment/Alignment.h \
 147  pairwise/FastPairwiseAlign.h multipleAlign/MSA.h \
 148  multipleAlign/ProfileBase.h multipleAlign/../alignment/Alignment.h \
 149  multipleAlign/../tree/AlignmentSteps.h \
 150  multipleAlign/ProfileAlignAlgorithm.h multipleAlign/LowScoreSegProfile.h \
 151  multipleAlign/Iteration.h multipleAlign/../general/clustalw.h \
 152  tree/TreeInterface.h tree/AlignmentSteps.h tree/../alignment/Alignment.h \
 153  tree/../general/clustalw.h general/debuglogObject.h general/DebugLog.h \
 154  general/statsObject.h general/Stats.h alignment/ObjectiveScore.h \
 155  alignment/../general/clustalw.h \
 156  alignment/../substitutionMatrix/globalmatrix.h \
 157  general/ClustalWResources.h Help.h \
 158  /usr/lib/gcc/x86_64-redhat-linux/4.4.7/../../../../include/c++/4.4.7/ctime
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 160 config.h:
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 162 /usr/lib/gcc/x86_64-redhat-linux/4.4.7/../../../../include/c++/4.4.7/iostream:
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 164 /usr/lib/gcc/x86_64-redhat-linux/4.4.7/../../../../include/c++/4.4.7/x86_64-redhat-linux/bits/c++config.h:
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 166 /usr/include/bits/wordsize.h:
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 168 /usr/lib/gcc/x86_64-redhat-linux/4.4.7/../../../../include/c++/4.4.7/x86_64-redhat-linux/bits/os_defines.h:
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 180 /usr/lib/gcc/x86_64-redhat-linux/4.4.7/../../../../include/c++/4.4.7/ostream:
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 182 /usr/lib/gcc/x86_64-redhat-linux/4.4.7/../../../../include/c++/4.4.7/ios:
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 206 /usr/lib/gcc/x86_64-redhat-linux/4.4.7/../../../../include/c++/4.4.7/exception:
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 210 /usr/lib/gcc/x86_64-redhat-linux/4.4.7/../../../../include/c++/4.4.7/bits/stl_algobase.h:
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 212 /usr/lib/gcc/x86_64-redhat-linux/4.4.7/../../../../include/c++/4.4.7/bits/functexcept.h:
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 214 /usr/lib/gcc/x86_64-redhat-linux/4.4.7/../../../../include/c++/4.4.7/exception_defines.h:
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 216 /usr/lib/gcc/x86_64-redhat-linux/4.4.7/../../../../include/c++/4.4.7/bits/cpp_type_traits.h:
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 218 /usr/lib/gcc/x86_64-redhat-linux/4.4.7/../../../../include/c++/4.4.7/ext/type_traits.h:
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 220 /usr/lib/gcc/x86_64-redhat-linux/4.4.7/../../../../include/c++/4.4.7/ext/numeric_traits.h:
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 222 /usr/lib/gcc/x86_64-redhat-linux/4.4.7/../../../../include/c++/4.4.7/bits/stl_pair.h:
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 224 /usr/lib/gcc/x86_64-redhat-linux/4.4.7/../../../../include/c++/4.4.7/bits/move.h:
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 226 /usr/lib/gcc/x86_64-redhat-linux/4.4.7/../../../../include/c++/4.4.7/bits/concept_check.h:
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 228 /usr/lib/gcc/x86_64-redhat-linux/4.4.7/../../../../include/c++/4.4.7/bits/stl_iterator_base_types.h:
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 230 /usr/lib/gcc/x86_64-redhat-linux/4.4.7/../../../../include/c++/4.4.7/bits/stl_iterator_base_funcs.h:
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 232 /usr/lib/gcc/x86_64-redhat-linux/4.4.7/../../../../include/c++/4.4.7/bits/stl_iterator.h:
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 234 /usr/lib/gcc/x86_64-redhat-linux/4.4.7/../../../../include/c++/4.4.7/debug/debug.h:
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 238 /usr/lib/gcc/x86_64-redhat-linux/4.4.7/../../../../include/c++/4.4.7/x86_64-redhat-linux/bits/c++locale.h:
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 240 /usr/lib/gcc/x86_64-redhat-linux/4.4.7/../../../../include/c++/4.4.7/clocale:
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