datadb/compbio/cassandra/ProteinBean.java

   1 package compbio.cassandra;
   2
   3 import java.util.ArrayList;
   4 import java.util.LinkedHashMap;
   5 import java.util.List;
   6 import java.util.Map;
   7
   8 public class ProteinBean implements PredictionIndex{
   9         private String sequence;
  10         private List<String> jobid;
  11         private LinkedHashMap<String,String> predictions;
  12         private List<String> subProt;           // protein sequence divided by several parts for highlighting the particular part
  13         private int size;
  14
  15         public ProteinBean (String seq, Map<String,String> pred) {
  16                 this.sequence = seq;
  17                 this.predictions = new LinkedHashMap<String,String>();
  18                 this.jobid = new ArrayList<String>();
  19                 setPredictions(pred);
  20         }
  21
  22         public void setPredictions(Map<String,String> pred) {
  23                 if (predictions == null)
  24                         predictions = new LinkedHashMap<String,String>();
  25                 for (String index : predIndex) {
  26                         this.predictions.put(index, pred.get(index));
  27                 }
  28                 this.size = predictions.size();
  29         }
  30
  31         public String getSequence () {
  32                 return sequence;
  33         }
  34
  35         public List<String> getJobid () {
  36                 return jobid;
  37         }
  38
  39         public void setJobid (String id) {
  40                 this.jobid.add(id);
  41         }
  42
  43         public int getSize () {
  44                 return size;
  45         }
  46
  47         public LinkedHashMap<String,String> getPredictions () {
  48                 return predictions;
  49         }
  50
  51         public void setSubProt(List<String> subProt) {
  52                 this.subProt = subProt;
  53         }
  54
  55         public List<String> getSubProt() {
  56                 return subProt;
  57         }
  58
  59 }