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2 # Jalview - A Sequence Alignment Editor and Viewer (Version 2.5.1)
3 # Copyright (C) 2010 J Procter, AM Waterhouse, G Barton, M Clamp, S Searle
5 # This file is part of Jalview.
7 # Jalview is free software: you can redistribute it and/or
8 # modify it under the terms of the GNU General Public License
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11 # Jalview is distributed in the hope that it will be useful, but
12 # WITHOUT ANY WARRANTY; without even the implied warranty
13 # of MERCHANTABILITY or FITNESS FOR A PARTICULAR
14 # PURPOSE. See the GNU General Public License for more details.
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20 * Jalview - A Sequence Alignment Editor and Viewer (Version 2.5)
21 * Copyright (C) 2010 J Procter, AM Waterhouse, G Barton, M Clamp, S Searle
23 * This file is part of Jalview.
25 * Jalview is free software: you can redistribute it and/or
26 * modify it under the terms of the GNU General Public License
27 * as published by the Free Software Foundation, either version 3 of the License, or (at your option) any later version.
29 * Jalview is distributed in the hope that it will be useful, but
30 * WITHOUT ANY WARRANTY; without even the implied warranty
31 * of MERCHANTABILITY or FITNESS FOR A PARTICULAR
32 * PURPOSE. See the GNU General Public License for more details.
34 * You should have received a copy of the GNU General Public License along with Jalview. If not, see <http://www.gnu.org/licenses/>.
36 <title>New Key Strokes and Menus</title>
38 <strong>New Key Strokes and Menus</strong>
39 <p>Many new <a href="../keys.html">keyboard shortcuts</a> have been
40 added in Jalview 2.2 to make editing, selecting and navigating an
41 alignment even easier. The selection commands in the <strong>Edit</strong>
42 menu, and the alignment formatting controls within the <strong>View</strong>
43 menu have also been moved into their own respective <strong>Select</strong>
44 and <strong>Format</strong> menus.</p>
45 <p>Some of the more important new keystrokes are shown below :
47 <li><strong>Page Up</strong> and <strong>Page Down</strong>
48 scrolls through the alignment view.</li>
49 <li><strong>Control I</strong> inverts the currently selected
50 sequence set, and <strong>Control Alt I</strong> will invert the
51 currently selected set of columns.
52 <li><strong>Control V</strong> will paste the contents of the
53 clipboard to the current alignment window, and <strong>Control
54 Shift V</strong> pastes the data to a new window.</li>
55 <li><strong>Control O</strong> opens the file browser for loading
56 a new alignment or Jalview archive.</li>
57 <li><strong>Control S</strong> saves the alignment with the
58 current filename and format, and <strong>Control Shift S</strong> opens
59 the <strong>Save As...</strong> dialog box.</li>
60 <li><strong>Control T</strong> creates a new alignment view, and <strong>Control
61 W</strong> closes the current view, or if none remain, then the whole alignment.</li>
62 <li><strong>Control E</strong> will remove gapped columns in the alignment.</li>
63 <li><strong>Control D</strong> opens the <strong>Remove Redundancy</strong> dialog box.</li>