1 action.refresh_services = Refresh Services
2 action.reset_services = Reset Services
3 action.merge_results = Merge Results
4 action.load_scheme = Load scheme
5 action.save_scheme = Save scheme
6 label.scheme_changed = Changes to scheme ''{0}'' have not been saved.<br><br>Save changes, or continue without saving to make a new colour scheme.
7 label.save_changes = Save Changes
8 label.dont_save_changes = Don't Save
9 action.save_image = Save Image
11 action.show_html_source = Show HTML Source
12 action.print = Print...
13 action.web_service = Web Service
14 action.cancel_job = Cancel Job
15 action.start_job = Start Job
16 action.revert = Revert
17 action.move_down = Move Down
18 action.move_up = Move Up
19 action.remove_return_datatype = Remove return datatype
20 action.add_return_datatype = Add return datatype
21 action.remove_input_parameter = Remove selected input parameter
22 action.add_input_parameter = Add input parameter
25 action.open_file = Open file
26 action.show_unconserved = Show Unconserved
27 action.open_new_alignment = Open new alignment
28 action.raise_associated_windows = Raise Associated Windows
29 action.minimize_associated_windows = Minimize Associated Windows
30 action.close_all = Close all
31 action.load_project = Load Project
32 action.save_project = Save Project
33 action.save_project_as = Save Project as...
35 label.quit_jalview = Quit Jalview?
36 action.expand_views = Expand Views
37 action.gather_views = Gather Views
38 action.page_setup = Page Setup...
39 action.reload = Reload
42 action.cancel = Cancel
43 action.create = Create
44 action.update = Update
45 action.delete = Delete
47 action.accept = Accept
48 action.select_ddbb = --- Select Database ---
52 action.remove_left = Remove left
53 action.remove_right = Remove right
54 action.remove_empty_columns = Remove Empty Columns
55 action.remove_all_gaps = Remove All Gaps
56 action.left_justify_alignment = Left Justify Alignment
57 action.right_justify_alignment = Right Justify Alignment
60 action.by_pairwise_id = By Pairwise Identity
62 action.by_length = By Length
63 action.by_group = By Group
64 action.unmark_as_reference = Unmark as Reference
65 action.set_as_reference = Set as Reference
66 action.remove = Remove
67 action.remove_redundancy = Remove Redundancy...
68 action.pairwise_alignment = Pairwise Alignment
69 action.user_defined = User Defined...
70 action.by_conservation = By Conservation
72 action.show_gaps = Show Gaps
73 action.show_hidden_markers = Show Hidden Markers
75 action.undefine_groups = Undefine Groups
76 action.make_groups_selection = Make Groups For Selection
80 action.scale_above = Scale Above
81 action.scale_left = Scale Left
82 action.scale_right = Scale Right
83 action.by_tree_order = By Tree Order
85 action.calculate_tree = Calculate Tree...
86 action.calculate_tree_pca = Calculate Tree or PCA...
88 action.by_annotation = By Annotation...
89 action.invert_sequence_selection = Invert Sequence Selection
90 action.invert_column_selection = Invert Column Selection
94 action.set_defaults = Defaults
95 action.create_group = Create Group
96 action.remove_group = Remove Group
97 action.edit_group = Edit Group
98 action.border_colour = Border colour
99 action.edit_new_group = Edit New Group
100 action.hide_sequences = Hide Sequences
101 action.sequences = Sequences
103 action.ids_sequences = IDS and sequences
104 action.reveal_all = Reveal All
105 action.reveal_sequences = Reveal Sequences
106 action.find_all = Find all
107 action.find_next = Find next
110 action.annotations = Annotations
111 action.change_params = Change Parameters
113 action.apply_threshold_all_groups = Apply threshold to all groups
114 action.apply_all_groups = Apply to all Groups
115 action.by_chain = By Chain
116 action.by_sequence = By Sequence
117 action.paste_annotations = Paste Annotations
118 action.format = Format
119 action.select = Select
120 action.new_view = New View
121 action.new_structure_view_with = Open new structure view with {0}
124 action.save_as = Save as...
126 action.change_font = Change Font
127 action.change_font_tree_panel = Change Font (Tree Panel)
128 action.colour = Colour
129 action.calculate = Calculate
130 action.select_all = Select all
131 action.select_highlighted_columns = Select Highlighted Columns
132 tooltip.select_highlighted_columns = Press B to mark highlighted columns, Ctrl-(or Cmd)-B to toggle, and Alt-B to mark all but highlighted columns
133 action.deselect_all = Deselect all
134 action.invert_selection = Invert selection
135 action.using_jmol = Using Jmol
136 action.undo_changes_to_feature_settings = Undo all unapplied changes to feature settings
137 action.undo_changes_to_feature_settings_and_close_the_dialog = Undo all pending changes and close the feature settings dialog
139 action.group_link = Group Link
140 action.show_chain = Show Chain
141 action.show_group = Show Group
142 action.fetch_db_references = Fetch DB References
143 action.view_flanking_regions = Show flanking regions
144 label.view_flanking_regions = Show sequence data either side of the subsequences involved in this alignment
145 label.structures_manager = Structures Manager
148 label.input_file_url = Enter URL or Input File
149 label.select_feature = Select feature
152 label.name_param = Name: {0}
154 label.group\: = Group:
155 label.group_name = Group Name
156 label.group_description = Group Description
157 label.edit_group_name_description = Edit Group Name/Description
158 label.colour = Colour:
159 label.description = Description
160 label.description\: = Description:
163 label.current_parameter_set_name = Current parameter set name:
164 label.service_action = Service Action:
165 label.post_url = POST URL:
166 label.url_suffix = URL Suffix
167 label.per_seq = per Sequence
168 label.result_vertically_separable = Results are vertically separable
170 label.undo_command = Undo {0}
171 label.redo_command = Redo {0}
172 label.principal_component_analysis = Principal Component Analysis
173 label.average_distance_identity = Average Distance Using % Identity
174 label.neighbour_joining_identity = Neighbour Joining Using % Identity
175 label.choose_calculation = Choose Calculation
176 label.calc_title = {0} Using {1}
177 label.tree_calc_av = Average Distance
178 label.tree_calc_nj = Neighbour Joining
179 label.score_model_pid = % Identity
180 label.score_model_blosum62 = BLOSUM62
181 label.score_model_pam250 = PAM 250
182 label.score_model_smithwatermanscore = Score between two sequences aligned with Smith-Waterman with default Peptide/Nucleotide matrix
183 label.score_model_sequencefeaturesimilarity = Distance measure of average number of features not shared at sequence positions
184 label.score_model_conservation = Physicochemical property conservation
185 label.score_model_enhconservation = Physicochemical property conservation
186 label.status_bar = Status bar
187 label.out_to_textbox = Output to Textbox
188 label.occupancy = Occupancy
189 # delete Clustal - use FileFormat name instead
190 label.clustal = Clustal
191 # label.colourScheme_<schemeName> as in JalviewColourScheme, spaces removed
192 label.colourScheme_clustal = Clustal
193 label.colourScheme_blosum62 = BLOSUM62 Score
194 label.colourScheme_%identity = Percentage Identity
195 label.colourScheme_zappo = Zappo
196 label.colourScheme_taylor = Taylor
197 label.colourScheme_hydrophobic = Hydrophobicity
198 label.colourScheme_helixpropensity = Helix Propensity
199 label.colourScheme_strandpropensity = Strand Propensity
200 label.colourScheme_turnpropensity = Turn Propensity
201 label.colourScheme_buriedindex = Buried Index
202 label.colourScheme_purine/pyrimidine = Purine/Pyrimidine
203 label.colourScheme_nucleotide = Nucleotide
204 label.colourScheme_nucleotideambiguity = Nucleotide Ambiguity
205 label.colourScheme_t-coffeescores = T-Coffee Scores
206 label.colourScheme_rnahelices = By RNA Helices
207 label.colourScheme_sequenceid = Sequence ID Colour
208 label.colourScheme_gecos\:flower = gecos Flower
209 label.colourScheme_gecos\:blossom = gecos Blossom
210 label.colourScheme_gecos\:sunset = gecos Sunset
211 label.colourScheme_gecos\:ocean = gecos Ocean
216 label.pileup = Pileup
218 label.average_distance_blosum62 = Average Distance Using BLOSUM62
219 label.neighbour_blosum62 = Neighbour Joining Using BLOSUM62
220 label.show_annotations = Show annotations
221 label.hide_annotations = Hide annotations
222 label.show_all_seq_annotations = Show sequence related
223 label.hide_all_seq_annotations = Hide sequence related
224 label.show_all_al_annotations = Show alignment related
225 label.hide_all_al_annotations = Hide alignment related
226 label.hide_all = Hide all
227 label.add_reference_annotations = Add reference annotations
228 label.find_tip = Search alignment, selection or sequence ids for a subsequence (ignoring gaps).<br>Accepts regular expressions - search Help for 'regex' for details.
229 label.colour_text = Colour Text
230 label.show_non_conserved = Show nonconserved
231 label.overview_window = Overview Window
233 label.above_identity_threshold = Above Identity Threshold
234 label.show_sequence_features = Show Sequence Features
235 label.nucleotide = Nucleotide
236 label.protein = Protein
237 label.nucleotides = Nucleotides
238 label.proteins = Proteins
240 label.to_new_alignment = To New Alignment
241 label.to_this_alignment = Add To This Alignment
242 label.apply_colour_to_all_groups = Apply Colour To All Groups
243 label.modify_identity_threshold = Modify Identity Threshold...
244 label.modify_conservation_threshold = Modify Conservation Threshold...
245 label.input_from_textbox = Input from textbox
246 label.centre_column_labels = Centre column labels
247 label.automatic_scrolling = Automatic Scrolling
248 label.documentation = Documentation
249 label.about = About...
250 label.show_sequence_limits = Show Sequence Limits
251 action.feature_settings = Feature Settings...
252 label.all_columns = All Columns
253 label.all_sequences = All Sequences
254 label.selected_columns = Selected Columns
255 label.selected_sequences = Selected Sequences
256 label.except_selected_sequences = All except selected sequences
257 label.all_but_selected_region = All but Selected Region (Shift+Ctrl+H)
258 label.selected_region = Selected Region
259 label.all_sequences_columns = All Sequences and Columns
260 label.hide_selected_annotations = Hide selected annotations
261 label.show_selected_annotations = Show selected annotations
262 label.group_consensus = Group Consensus
263 label.group_conservation = Group Conservation
264 label.show_consensus_histogram = Show Consensus Histogram
265 label.show_consensus_logo = Show Consensus Logo
266 label.norm_consensus_logo = Normalise Consensus Logo
267 label.apply_all_groups = Apply to all groups
268 label.autocalculated_annotation = Autocalculated Annotation
269 label.show_first = Show first
270 label.show_last = Show last
271 label.struct_from_pdb = Process secondary structure from PDB
272 label.use_rnaview = Use RNAView for secondary structure
273 label.autoadd_secstr = Add secondary structure annotation to alignment
274 label.autoadd_temp = Add Temperature Factor annotation to alignment
275 label.structure_viewer = Default structure viewer
276 label.double_click_to_browse = Double-click to browse for file
277 label.viewer_path = Path to {0} program
278 label.viewer_path_tip = Jalview will first try any path entered here, else standard installation locations.<br>Double-click to browse for file.
279 label.invalid_viewer_path = Path not found or not executable
280 label.viewer_missing = Structure viewer not found.<br/>Please enter the path to the executable (if installed),<br/>or download and install the program.
281 label.open_viewer_failed = Error opening {0} - is it installed?\nCheck configured path in Structure tab of Jalview''s Preferences
282 label.min_colour = Minimum Colour
283 label.max_colour = Maximum Colour
284 label.no_colour = No Colour
285 label.use_original_colours = Use Original Colours
286 label.threshold_minmax = Threshold is min/max
287 label.represent_group_with = Represent Group with {0}
288 label.selection = Selection
289 label.group_colour = Group Colour
290 label.sequence = Sequence
291 label.view_pdb_structure = View PDB Structure
292 label.min_value = Min value
293 label.max_value = Max value
294 label.no_value = No value
295 label.new_feature = New Feature
296 label.match_case = Match Case
297 label.view_alignment_editor = View in alignment editor
298 label.labels = Labels
299 label.output_values = Output Values...
300 label.output_points = Output points...
301 label.output_transformed_points = Output transformed points
302 label.input_data = Input Data...
303 label.nucleotide_matrix = Nucleotide matrix
304 label.protein_matrix = Protein matrix
305 label.show_bootstrap_values = Show Bootstrap Values
306 label.show_distances = Show distances
307 label.mark_unassociated_leaves = Mark Unassociated Leaves
308 label.fit_to_window = Fit To Window
309 label.newick_format = Newick Format
310 label.select_newick_like_tree_file = Select a newick-like tree file
311 label.colours = Colours
312 label.view_mapping = View Mapping
313 label.wireframe = Wireframe
314 label.depthcue = Depthcue
315 label.z_buffering = Z Buffering
316 label.charge_cysteine = Charge & Cysteine
317 label.all_chains_visible = All Chains Visible
318 label.successfully_added_features_alignment = Successfully added features to alignment
319 label.keyboard_editing_mode = Keyboard editing mode is {0}
320 label.paste_features_annotations_Tcoffee_here = Paste your features / annotations / T-coffee score file here.
321 label.removed_columns = Removed {0} columns.
322 label.removed_empty_columns = Removed {0} empty columns.
323 label.paste_newick_tree_file = Paste your Newick tree file here.
324 label.order_by_params = Order by {0}
325 label.html_content = <html>{0}</html>
326 label.paste_pdb_file= Paste your PDB file here.
327 label.paste_pdb_file_for_sequence = Paste PDB file for sequence {0}
328 label.could_not_parse_newick_file = Could not parse Newick file\!\n {0}
329 label.successfully_pasted_tcoffee_scores_to_alignment= Successfully pasted T-Coffee scores to alignment.
330 label.failed_add_tcoffee_scores = Failed to add T-Coffee scores:
331 label.successfully_pasted_annotation_to_alignment= Successfully pasted annotation to alignment.
332 label.couldnt_parse_pasted_text_as_valid_annotation_feature_GFF_tcoffee_file = Couldn't parse pasted text as a valid annotation, feature, GFF, or T-Coffee score file
333 label.successfully_pasted_alignment_file = Successfully pasted alignment file
334 label.paste_your_alignment_file = Paste your alignment file here
335 label.paste_your = Paste your
336 label.finished_searching = Finished searching
337 label.subsequence_matches_found = {0} subsequence matches found
338 label.search_results= Search results {0} : {1}
339 label.found_match_for = Found match for {0}
343 label.calculating = Calculating....
344 label.modify_conservation_visibility = Modify conservation visibility
345 label.colour_residues_above_occurrence = Colour residues above % occurrence
346 label.set_this_label_text = set this label text
347 label.sequences_from = Sequences from {0}
348 label.successfully_loaded_file = Successfully loaded file {0}
349 label.successfully_loaded_matrix = Successfully loaded score matrix {0}
350 label.successfully_saved_to_file_in_format = Successfully saved to file: {0} in {1} format.
351 label.copied_sequences_to_clipboard = Copied {0} sequences to clipboard.
352 label.check_file_matches_sequence_ids_alignment = Check that the file matches sequence IDs in the alignment.
353 label.problem_reading_tcoffee_score_file = Problem reading T-COFFEE score file
354 label.source_to_target = {0} ... {1}
355 label.per_sequence_only= Per-sequence only
356 label.to_file = to File
357 label.to_textbox = to Textbox
358 label.jalview = Jalview
359 label.csv_spreadsheet = CSV (Spreadsheet)
360 label.status = Status
361 label.channels = Channels
362 label.channel_title_item_count = {0} ({1})
363 label.blog_item_published_on_date = {0} {1}
364 label.groovy_console = Groovy Console...
365 label.lineart = Lineart
366 label.dont_ask_me_again = Don't ask me again
367 label.select_character_rendering_style = {0} character rendering style
368 label.select_character_style_title = {0} Rendering options
369 label.invert_selection = Invert Selection
370 label.optimise_order = Optimise Order
371 label.seq_sort_by_score = Sequence sort by Score
372 label.load_colours = Load Colours
373 label.save_colours = Save Colours
374 label.load_colours_tooltip = Load feature colours and filters from file
375 label.save_colours_tooltip = Save feature colours and filters to file
376 label.selected_database_to_fetch_from = Selected {0} database {1} to fetch from {2}
377 label.database_param = Database: {0}
378 label.example = Example
379 label.example_param = Example: {0}
380 label.select_file_format_before_saving = You must select a file format before saving!
381 label.file_format_not_specified = File format not specified
382 label.couldnt_save_file = Couldn''t save file: {0}
383 label.error_saving_file = Error Saving File
384 label.remove_from_default_list = Remove from default list?
385 label.remove_user_defined_colour = Remove user defined colour
386 label.you_must_select_least_two_sequences = You must select at least 2 sequences.
387 label.invalid_selection = Invalid Selection
388 label.sequence_selection_insufficient = Sequence selection insufficient
389 label.you_need_at_least_n_sequences = You need to select at least {0} sequences
390 label.not_enough_sequences = Not enough sequences
391 label.selected_region_to_tree_may_only_contain_residues_or_gaps = The selected region to create a tree may\nonly contain residues or gaps.\nTry using the Pad function in the edit menu,\nor one of the multiple sequence alignment web services.
392 label.sequences_selection_not_aligned = Sequences in selection are not aligned
393 label.problem_reading_tree_file = Problem reading tree file
394 label.possible_problem_with_tree_file = Possible problem with tree file
395 label.select_at_least_three_bases_in_at_least_one_sequence_to_cDNA_translation = Please select at least three bases in at least one sequence in order to perform a cDNA translation.
396 label.translation_failed = Translation Failed
397 label.error_when_translating_sequences_submit_bug_report = Unfortunately, something went wrong when translating your sequences.\nPlease take a look in the Jalview java console\nand submit a bug report including the stacktrace.
398 label.implementation_error = Implementation error:
399 label.automatically_associate_structure_files_with_sequences_same_name = Do you want to automatically associate the {0} structure file(s) with sequences in the alignment that have the same name?
400 label.automatically_associate_structure_files_by_name = Automatically Associate Structure files by name
401 label.ignore_unmatched_dropped_files_info = <html>Do you want to <em>ignore</em> the {0} files whose names did not match any sequence IDs ?</html>
402 label.ignore_unmatched_dropped_files = Ignore unmatched dropped files?
403 label.view_name_original = Original
404 label.enter_view_name = Enter View Name
405 label.enter_label = Enter label
406 label.enter_label_for_the_structure = Enter a label for the structure
407 label.pdb_entries_couldnt_be_retrieved = The following pdb entries could not be retrieved from the PDB\:\n{0}\nPlease retry, or try downloading them manually.
408 label.couldnt_load_file = Couldn't load file
409 label.couldnt_find_pdb_id_in_file = Couldn't find a PDB id in the file supplied. Please enter an Id to identify this structure.
410 label.no_pdb_id_in_file = No PDB Id in File
411 label.couldnt_read_pasted_text = Couldn''t read the pasted text {0}
412 label.error_parsing_text = Error parsing text
413 label.input_alignment_from_url = Input Alignment From URL
414 label.input_alignment = Input Alignment
415 label.vamsas_document_import_failed = Vamsas Document Import Failed
416 label.couldnt_locate = Couldn''t locate {0}
417 label.url_not_found = URL not found
418 label.new_sequence_url_link = New sequence URL link
419 label.error_retrieving_data = Error Retrieving Data
420 label.user_colour_scheme_must_have_name = User colour scheme must have a name
421 label.no_name_colour_scheme = No name for colour scheme
422 label.invalid_url = Invalid URL !
423 label.error_loading_file = Error loading file
424 label.problems_opening_file = Encountered problems opening {0}!!
425 label.file_open_error = File open error
426 label.colour_scheme_exists_overwrite = Colour scheme {0} exists.\nContinue saving colour scheme as {1}?"
427 label.duplicate_scheme_name = Duplicate scheme name
428 label.jalview_new_questionnaire = There is a new Questionnaire available. Would you like to complete it now ?\n
429 label.jalview_user_survey = Jalview User Survey
430 label.alignment_properties = Alignment Properties: {0}
431 label.alignment_props = Alignment Properties
432 label.input_cut_paste = Cut & Paste Input
433 label.input_cut_paste_params = Cut & Paste Input - {0}
434 label.alignment_output_command = Alignment output - {0}
435 label.annotations = Annotations
436 label.structure_options = Structure Options
437 label.features = Features
438 label.overview_params = Overview {0}
439 label.paste_newick_file = Paste Newick file
440 label.load_tree_from_file = From File -
441 label.colour_by_annotation = Colour by Annotation
442 label.selection_output_command = Selection output - {0}
443 label.annotation_for_displayid = <p><h2>Annotation for {0} </h2></p><p>
444 label.pdb_sequence_mapping = PDB - Sequence Mapping
445 label.pca_details = PCA details
446 label.redundancy_threshold_selection = Redundancy threshold selection
447 label.user_defined_colours = User defined colours
448 label.jalviewLite_release = JalviewLite - Release {0}
449 label.jaview_build_date = Build date: {0}
450 label.jalview_authors_1 = Authors: Jim Procter, Andrew Waterhouse, Mungo Carstairs, Tochukwu Ofoegbu, Lauren Lui, Jan Engelhardt,
451 label.jalview_authors_2 = Natasha Sherstnev, Daniel Barton, Michele Clamp, James Cuff, Steve Searle, David Martin & Geoff Barton.
452 label.jalview_dev_managers = Development managed by The Barton Group, University of Dundee, Scotland, UK.
453 label.jalview_distribution_lists = For help, see the FAQ at www.jalview.org and/or join the jalview-discuss@jalview.org mailing list
454 label.jalview_please_cite = If you use Jalview, please cite:
455 label.jalview_cite_1_authors = Waterhouse, A.M., Procter, J.B., Martin, D.M.A, Clamp, M. and Barton, G. J. (2009)
456 label.jalview_cite_1_title = Jalview Version 2 - a multiple sequence alignment editor and analysis workbench
457 label.jalview_cite_1_ref = Bioinformatics doi: 10.1093/bioinformatics/btp033
458 label.right_click = Right click
459 label.to_add_annotation = to add annotation
460 label.alignment_has_no_annotations = Alignment has no annotations
461 label.retrieving_pdb_data = Retrieving PDB data...
463 label.no_features_added_to_this_alignment = No Features added to this alignment!!
464 label.features_can_be_added_from_searches_1 = (Features can be added from searches or
465 label.features_can_be_added_from_searches_2 = from Jalview / GFF features files)
466 label.calculating_pca= Calculating PCA
467 label.jalview_cannot_open_file = Jalview can't open file
468 label.jalview_applet = Jalview applet
469 label.loading_data = Loading data
470 label.memory_stats = Total Free Memory: {0} MB; Max Memory: {1} MB; {2} %
471 label.calculating_tree = Calculating tree
472 label.state_queueing = queuing
473 label.state_running = running
474 label.state_completed = finished
475 label.state_job_cancelled = job cancelled!!
476 label.state_job_error = job error!
477 label.server_error_try_later = Server Error! (try later)
478 label.error_loading_pdb_data = Error loading PDB data!!
479 label.fetching_pdb_data = Fetching PDB data...
480 label.structure_type = Structure type
481 label.settings_for_type = Settings for {0}
482 label.view_full_application = View in Full Application
483 label.load_associated_tree = Load Associated Tree...
484 label.load_features_annotations = Load Features/Annotations...
485 label.load_vcf = Load SNP variants from plain text or indexed VCF data
486 label.load_vcf_file = Load VCF File
487 label.searching_vcf = Loading VCF variants...
488 label.added_vcf = Added {0} VCF variants to {1} sequence(s)
489 label.export_features = Export Features...
490 label.export_annotations = Export Annotations...
491 label.to_upper_case = To Upper Case
492 label.to_lower_case = To Lower Case
493 label.toggle_case = Toggle Case
494 label.edit_name_description = Edit Name/Description...
495 label.create_sequence_feature = Create Sequence Feature...
496 label.edit_sequence = Edit Sequence
497 label.edit_sequences = Edit Sequences
498 label.insert_gap = Insert 1 gap
499 label.insert_gaps = Insert {0} gaps
500 label.delete_gap = Delete 1 gap
501 label.delete_gaps = Delete {0} gaps
502 label.sequence_details = Sequence Details
503 label.viewer_help = {0} Help
504 label.close_viewer = Close Viewer
505 label.confirm_close_viewer = This will close Jalview''s connection to {0}.<br>Do you want to close the {1} window as well?
507 label.sort_by = Sort alignment by
508 label.sort_by_score = Sort by Score
509 label.sort_by_density = Sort by Density
510 label.sequence_sort_by_density = Sequence sort by Density
511 label.sort_ann_by = Sort annotations by
512 label.sort_annotations_by_sequence = Sort by sequence
513 label.sort_annotations_by_label = Sort by label
514 label.reveal = Reveal
515 label.hide_columns = Hide Columns
516 label.load_jalview_annotations = Load Jalview Annotations or Features File
517 label.load_tree_file = Load a tree file
518 label.retrieve_parse_sequence_database_records_alignment_or_selected_sequences = Retrieve and parse sequence database records for the alignment or the currently selected sequences
519 label.standard_databases = Standard Databases
520 label.fetch_embl_uniprot = Fetch from EMBL/EMBLCDS or Uniprot/PDB and any selected DAS sources
521 label.fetch_uniprot_references = Fetch Uniprot references
522 label.search_3dbeacons = Search 3D-Beacons
523 label.find_models_from_3dbeacons = Search 3D-Beacons for 3D structures and models
524 label.3dbeacons = 3D-Beacons
525 label.fetch_references_for = Fetch database references for {0} sequences ?
526 label.fetch_references_for_3dbeacons = 3D Beacons needs to fetch Uniprot References for {0} sequences. Do you want to continue ?
527 label.reset_min_max_colours_to_defaults = Reset min and max colours to defaults from user preferences.
528 label.align_structures_using_linked_alignment_views = Superpose structures using {0} selected alignment view(s)
529 label.threshold_feature_display_by_score = Threshold the feature display by score.
530 label.threshold_feature_no_threshold = No Threshold
531 label.threshold_feature_above_threshold = Above Threshold
532 label.threshold_feature_below_threshold = Below Threshold
533 label.adjust_threshold = Adjust threshold
534 label.toggle_absolute_relative_display_threshold = Toggle between absolute and relative display threshold.
535 label.select_colour_minimum_value = Select Colour for Minimum Value
536 label.select_colour_maximum_value = Select Colour for Maximum Value
537 label.open_url_param = Open URL {0}
538 label.open_url_seqs_param = Open URL ({0}..) ({1} seqs)
539 label.load_pdb_file_associate_with_sequence = Load a PDB file and associate it with sequence {0}
540 label.reveal_hidden_columns = Reveal Hidden Columns with Right Mouse Button
541 label.dark_colour = Dark Colour
542 label.light_colour = Light Colour
543 label.highlightnode = Left click to select leaves.<br>Double-click to invert leaves.<br>Right click to change colour.
544 label.load_colour_scheme = Load colour scheme
545 label.copy_format_from = Copy format from
546 label.toggle_enabled_views = When enabled, allows many views to be selected.
547 label.select_all_views = Select all views
548 label.select_many_views = Select many views
549 label.edit_notes_parameter_set = Click to edit the notes for this parameter set.
550 label.open_local_file = Open local file
551 label.enable_automatically_sort_alignment_when_open_new_tree = Enable this to automatically sort<br>the alignment when you open<br> a new tree.
552 label.listen_for_selections = Listen for selections
553 label.selections_mirror_selections_made_same_sequences_other_views = When selected, selections in this view will mirror<br>selections made on the same sequences in other views.
554 label.toggle_sequence_visibility = Shift+H toggles sequence visiblity
555 label.toggle_columns_visibility = Ctrl+H toggles column visiblity.
556 label.toggles_visibility_hidden_selected_regions = H toggles visibility of hidden or selected regions
557 label.rename_tab_eXpand_reGroup= Right-click to rename tab <br> Press X to eXpand tabs, G to reGroup.
558 label.right_align_sequence_id = Right Align Sequence Id
559 label.sequence_id_tooltip = Sequence ID Tooltip
560 label.no_services = <No Services>
561 label.select_copy_raw_html = Select this if you want to copy raw html
562 label.from_url = from URL
563 label.any_trees_calculated_or_loaded_alignment_automatically_sort = When selected, any trees calculated or loaded onto the alignment will automatically sort the alignment
564 label.sort_with_new_tree = Sort With New Tree
565 label.from_textbox = from Textbox
566 label.window = Window
567 label.preferences = Preferences
569 label.fetch_sequences = Fetch Sequences
570 action.fetch_sequences = Fetch Sequences...
571 label.collect_garbage = Collect Garbage
572 label.show_memory_usage = Show Memory Usage
573 label.show_java_console = Show Java Console
574 label.show_jalview_news = Show Jalview News
575 label.take_snapshot = Take snapshot
576 label.monospaced_fonts_faster_to_render = Monospaced fonts are faster to render
577 label.anti_alias_fonts = Anti-alias Fonts (Slower to render)
578 label.monospaced_font= Monospaced
579 label.quality = Quality
580 label.maximize_window = Maximize Window
581 label.conservation = Conservation
582 label.consensus = Consensus
583 label.histogram = Histogram
585 label.non_positional_features = List Non-positional Features
586 label.database_references = List Database References
587 #label.share_selection_across_views = Share selection across views
588 #label.scroll_highlighted_regions = Scroll to highlighted regions
589 label.gap_symbol = Gap Symbol
590 label.prot_alignment_colour = Protein Alignment Colour
591 label.nuc_alignment_colour = Nucleotide Alignment Colour
592 label.address = Address
595 label.default_browser_unix_windows = Default Browser (Unix, Windows)
596 label.send_usage_statistics = Send usage statistics
597 label.check_for_questionnaires = Check for questionnaires
598 label.check_for_latest_version = Check for latest version
599 label.url_linkfrom_sequence_id = URL link from Sequence ID
600 label.no_proxy = No proxy servers
601 label.system_proxy = System proxy servers (http={0}; https={1})
602 label.use_proxy_server = Use these proxy servers
603 label.auth_required = Authentication required
604 label.username = Username
605 label.password = Password
606 label.proxy_password_required = Proxy password required
607 label.not_stored = not stored in Preferences file
608 label.rendering_style = {0} rendering style
609 label.append_start_end = Append /start-end (/15-380)
610 label.full_sequence_id = Full Sequence Id
611 label.smooth_font = Smooth Font
612 label.autocalculate_consensus = AutoCalculate Consensus
613 label.pad_gaps = Pad Gaps
614 label.pad_gaps_when_editing = Pad Gaps When Editing
615 label.automatically_set_id_width = Automatically set ID width
616 label.figure_id_column_width = Figure ID column width
617 label.use_modeller_output = Use Modeller Output
618 label.wrap_alignment = Wrap Alignment
619 label.right_align_ids = Right Align Ids
620 label.sequence_name_italics = Italic Sequence Ids
621 label.open_overview = Open Overview
622 label.default_colour_scheme_for_alignment = Default Colour Scheme for alignment
623 label.annotation_shading_default = Annotation Shading Default
624 label.default_minimum_colour_annotation_shading = Default Minimum Colour for annotation shading
625 label.default_maximum_colour_annotation_shading = Default Maximum Colour for annotation shading
626 label.visual = Visual
627 label.connections = Connections
628 label.output = Output
629 label.editing = Editing
630 label.web_services = Web Services
631 label.right_click_to_edit_currently_selected_parameter = Right click to edit currently selected parameter.
632 label.let_jmol_manage_structure_colours = Let Jmol manage structure colours
633 label.fetch_viewer_attributes = Fetch {0} attributes
634 label.fetch_viewer_attributes_tip = Copy {0} attribute to Jalview feature
635 label.marks_leaves_tree_not_associated_with_sequence = Marks leaves of tree not associated with a sequence
636 label.index_web_services_menu_by_host_site = Index web services in menu by the host site
637 label.option_want_informed_web_service_URL_cannot_be_accessed_jalview_when_starts_up = Check this option if you want to be informed<br>when a web service URL cannot be accessed by Jalview<br>when it starts up
638 label.new_service_url = New Service URL
639 label.edit_service_url = Edit Service URL
640 label.delete_service_url = Delete Service URL
641 label.details = Details
642 label.options = Options
643 label.parameters = Parameters
644 label.proxy_servers = Proxy Servers
645 label.file_output = File Output
646 label.select_input_type = Select input type
647 label.set_options_for_type = Set options for type
648 label.data_input_parameters = Data input parameters
649 label.data_returned_by_service = Data returned by service
650 label.rsbs_encoded_service = RSBS Encoded Service
651 label.parsing_errors = Parsing errors
652 label.simple_bioinformatics_rest_services = Simple Bioinformatics Rest Services
653 label.web_service_discovery_urls = Web Service Discovery URLS
654 label.input_parameter_name = Input Parameter name
655 label.short_descriptive_name_for_service = Short descriptive name for service
656 label.function_service_performs = What kind of function the service performs (e.g. alignment, analysis, search, etc).
657 label.brief_description_service = Brief description of service
658 label.url_post_data_service = URL to post data to service. Include any special parameters needed here
659 label.optional_suffix = Optional suffix added to URL when retrieving results from service
660 label.preferred_gap_character = Which gap character does this service prefer?
661 label.gap_character = Gap character
662 label.move_return_type_up_order= Move return type up order
663 label.move_return_type_down_order= Move return type down order
664 label.update_user_parameter_set = Update this existing user parameter set
665 label.delete_user_parameter_set = Delete the currently selected user parameter set
666 label.create_user_parameter_set = Create a new parameter set with the current settings.
667 label.revert_changes_user_parameter_set = Undo all changes to the current parameter set
668 label.start_job_current_settings = Start Job with current settings
669 label.cancel_job_close_dialog = Close this dialog and cancel job
670 label.input_output = Input/Output
671 label.cut_paste = Cut'n'Paste
672 label.adjusting_parameters_for_calculation = Adjusting parameters for existing Calculation
673 label.2d_rna_structure_line = 2D RNA {0} (alignment)
674 label.2d_rna_sequence_name = 2D RNA - {0}
675 label.edit_name_and_description_current_group = Edit name and description of current group
676 label.from_file = From File
677 label.enter_pdb_id = Enter PDB Id
678 label.enter_pdb_id_tip = Enter PDB Id (or pdbid:chaincode)
679 label.text_colour = Text Colour...
680 label.structure = Structure
681 label.show_pdbstruct_dialog = 3D Structure Data...
682 label.view_rna_structure = VARNA 2D Structure
683 label.create_sequence_details_report_annotation_for = Annotation for {0}
684 label.sequence_details_for = Sequence Details for {0}
685 label.sequence_name = Sequence Name
686 label.sequence_description = Sequence Description
687 label.edit_sequence_name_description = Edit Sequence Name/Description
688 label.spaces_converted_to_underscores = Spaces have been converted to _
689 label.no_spaces_allowed_sequence_name = No spaces allowed in Sequence Name
690 label.select_outline_colour = Select Outline Colour
691 label.web_browser_not_found_unix = Unixers\: Couldn't find default web browser.\nAdd the full path to your browser in Preferences."
692 label.web_browser_not_found = Web browser not found
693 label.select_pdb_file_for = Select a PDB file for {0}
696 label.show_database_refs = Show Database Refs
697 label.show_non_positional_features = Show Non-Positional Features
698 label.save_png_image = Save As PNG Image
699 label.load_tree_for_sequence_set = Load a tree for this sequence set
700 label.export_image = Export Image
701 label.vamsas_store = VAMSAS store
702 label.translate_cDNA = Translate as cDNA
703 label.reverse = Reverse
704 label.reverse_complement = Reverse Complement
705 label.linked_view_title = Linked CDS and protein view
706 label.extract_scores = Extract Scores
707 label.get_cross_refs = Get Cross-References
708 label.sort_alignment_new_tree = Sort Alignment With New Tree
709 label.add_sequences = Add Sequences
710 label.new_window = New Window
711 label.split_window = Split Window
712 label.set_as_default = Set as Default
713 label.show_labels = Show labels
714 action.background_colour = Background Colour...
715 label.associate_nodes_with = Associate Nodes With
716 label.link_name = Link Name
717 label.pdb_file = PDB file
718 label.colour_with_jmol = Colour with Jmol
719 label.let_viewer_manage_structure_colours = Let viewer manage structure colours
720 label.colour_with_viewer = Colour in structure viewer
721 label.superpose_structures = Superpose Structures
722 error.superposition_failed = Superposition failed: {0}
723 label.insufficient_residues = Not enough aligned residues ({0}) to perform superposition
724 label.create_viewer_attributes = Write Jalview features
725 label.create_viewer_attributes_tip = Set structure residue attributes for Jalview features
726 label.attributes_set = {0} attribute values set on {1}
727 label.sort_alignment_by_tree = Sort Alignment By Tree
728 label.mark_unlinked_leaves = Mark Unlinked Leaves
729 label.associate_leaves_with = Associate Leaves With
730 label.save_colour_scheme_with_unique_name_added_to_colour_menu = Save your colour scheme with a unique name and it will be added to the Colour menu
731 label.case_sensitive = Case Sensitive
732 label.lower_case_colour = Colour All Lower Case
733 label.lower_case_tip = Chosen colour applies to all lower case symbols
734 label.index_by_host = Index by Host
735 label.index_by_type = Index by Type
736 label.enable_jabaws_services = Enable JABAWS Services
737 label.display_warnings = Display Warnings
738 label.move_url_up = Move URL Up
739 label.move_url_down = Move URL Down
740 label.add_sbrs_definition = Add a SBRS Definition
741 label.edit_sbrs_definition = Edit SBRS Definition
742 label.delete_sbrs_definition = Delete SBRS Definition
743 label.your_sequences_have_been_verified = Your sequences have been verified against known sequence databases.\n(Use Calculate | Show flanking regions to show enclosing sequence.)\nTo preserve data changes, save your alignment.\n\n
744 label.sequences_updated = Sequences updated
745 label.dbref_search_completed = DBRef search completed
746 label.fetch_all_param = Fetch all {0}
747 label.paste_new_window = Paste To New Window
748 label.settings_for_param = Settings for {0}
749 label.view_params = View {0}
750 label.aacon_calculations = AACon Calculations
751 label.aacon_settings = Change AACon Settings...
752 tooltip.aacon_calculations = When checked, AACon calculations are updated automatically.
753 tooltip.aacon_settings = Modify settings for AACon calculations.
754 label.rnalifold_calculations = RNAAliFold Prediction
755 label.rnalifold_settings = Change RNAAliFold settings...
756 tooltip.rnalifold_calculations = When checked, RNA secondary structure predictions will be calculated for the alignment, and updated when edits are made.
757 tooltip.rnalifold_settings = Modify settings for the RNAAliFold prediction. Use this to hide or show different results of the RNA calculation, and change RNA folding parameters.
758 label.all_views = All Views
759 label.align_sequences_to_existing_alignment = Align sequences to an existing alignment
760 label.realign_with_params = Realign with {0}
761 label.calcname_with_default_settings = {0} with Defaults
762 label.action_with_default_settings = {0} with default settings
763 label.edit_settings_and_run = Edit settings and run...
764 label.view_and_change_parameters_before_alignment = View and change the parameters before alignment
765 label.run_with_preset_params = Run {0} with preset
766 label.view_and_change_parameters_before_running_calculation = View and change parameters before running calculation
767 label.view_documentation = View documentation
768 label.select_return_type = Select return type
769 label.translation_of_params = Translation of {0} (Table {1})
770 label.features_for_params = Features for - {0}
771 label.annotations_for_params = Annotations for - {0}
772 label.generating_features_for_params = Generating features for - {0}
773 label.generating_annotations_for_params = Generating annotations for - {0}
774 label.varna_params = VARNA - {0}
775 label.sequence_feature_settings = Sequence Feature Settings
776 label.sequence_feature_settings_for = Sequence Feature Settings for {0}
777 label.sequence_feature_settings_for_view = Sequence Feature Settings for view "{0}"
778 label.sequence_feature_settings_for_CDS_and_Protein = Sequence Feature Settings for CDS and Protein
779 label.pairwise_aligned_sequences = Pairwise Aligned Sequences
780 label.original_data_for_params = Original Data for {0}
781 label.points_for_params = Points for {0}
782 label.transformed_points_for_params = Transformed points for {0}
783 label.variable_color_for = Variable Feature Colour for {0}
784 label.select_background_colour = Select Background Colour
785 label.invalid_font = Invalid Font
786 label.search_db_all = Search all of {0}
787 label.search_db_index = Search {0} index {1}
788 label.separate_multiple_accession_ids = Enter one or more accession IDs separated by a semi-colon ";"
789 label.separate_multiple_query_values = Enter one or more {0} separated by a semi-colon ";"
790 label.search_all = Enter one or more search values separated by a semi-colon ";" (Note: This searches the entire database)
791 label.replace_commas_semicolons = Replace commas with semi-colons
792 label.parsing_failed_syntax_errors_shown_below_param = Parsing failed. Syntax errors shown below {0}
793 label.parsing_failed_unrecoverable_exception_thrown_param = \nParsing failed. An unrecoverable exception was thrown\:\n {0}
794 label.example_query_param = Example query: {0}
795 label.enter_value_increase_conservation_visibility = Enter value to increase conservation visibility
796 label.enter_percentage_identity_above_which_colour_residues = Enter % identity above which to colour residues
797 label.wswublast_client_credits = To display sequence features an exact Uniprot id with 100% sequence identity match must be entered.\nIn order to display these features, try changing the names of your sequences to the ids suggested below.\n\nRunning WSWUBlast at EBI.\nPlease quote Pillai S., Silventoinen V., Kallio K., Senger M., Sobhany S., Tate J., Velankar S., Golovin A., Henrick K., Rice P., Stoehr P., Lopez R.\nSOAP-based services provided by the European Bioinformatics Institute.\nNucleic Acids Res. 33(1)\:W25-W28 (2005));
798 label.blasting_for_unidentified_sequence = BLASTing for unidentified sequences
799 label.select_columns_containing = Select columns containing
800 label.select_columns_not_containing = Select columns that do not contain
801 label.hide_columns_containing = Hide columns containing
802 label.hide_columns_not_containing = Hide columns that do not contain
803 option.trim_retrieved_seqs = Trim retrieved sequences
804 label.trim_retrieved_sequences = When the reference sequence is longer than the sequence that you are working with, only keep the relevant subsequences.
805 label.use_sequence_id_1 = Use $DB_ACCESSION$ or $DB_ACCESSION=/<regex>/=$
806 label.use_sequence_id_2 = to embed accession id in URL
807 label.use_sequence_id_3 = Use $SEQUENCE_ID$ similarly to embed sequence id
808 label.use_sequence_id_4 =
809 label.ws_parameters_for = Parameters for {0}
810 label.switch_server = Switch server
811 label.choose_jabaws_server = Choose a server for running this service
812 label.services_at = Services at {0}
813 label.rest_client_submit = {0} using {1}
814 label.fetch_retrieve_from =Retrieve from {0}</html>
815 label.fetch_retrieve_from_all_sources = Retrieve from all {0} sources in {1}<br>First is :{2}<html>
816 label.feature_settings_click_drag = Drag up or down to change render order.<br/>Double click to select columns containing feature.
817 label.transparency_tip = Adjust transparency to 'see through' feature colours.
818 label.opt_and_params_further_details = see further details by right-clicking
819 label.opt_and_params_show_brief_desc_image_link = <html>Click to show brief description<br><img src="{0}"/> Right click for further information.</html>
820 label.opt_and_params_show_brief_desc = <html>Click to show brief description<br></html>
821 label.adjusts_width_generated_eps_png = <html>Adjusts the width of the generated EPS or PNG file to ensure even the longest sequence ID or annotation label is displayed</html>
822 label.manually_specify_width_left_column = <html>Manually specify the width of the left hand column where sequence IDs and annotation labels will be rendered in exported alignment figures. This setting will be ignored if 'Automatically set ID width' is set</html>
823 label.job_created_when_checked = <html>When checked, a job is created for every sequence in the current selection.</html>
824 label.when_checked_job_visible_region_and_results = <html>When checked, a single job is created for the visible region and results mapped back onto their location in the alignment. Otherwise, a job would be created for every contiguous region visible in the alignment or current selection (e.g. a multiple alignment).</html>
825 label.flat_file_representation = <html>Flat file representation of this rest service using the Really Simple Bioinformatics Service formalism</html>
826 label.result_of_parsing_rsbs = <html>Results of parsing the RSBS representation</html>
827 label.user_preset = User Preset
828 label.service_preset = Service Preset
829 label.run_with_preset = Run {0} with preset
830 label.view_service_doc_url = <html>View <a href="{0}">{1}</a></html>
831 action.by_title_param = By {0}
832 label.source_from_db_source = Sources from {0}
833 label.from_msname = from {0}
834 label.superpose_with = Superpose with
835 label.scale_label_to_column = Scale Label to Column
836 label.add_new_row = Add New Row
837 label.edit_label_description = Edit Label/Description
838 label.hide_row = Hide This Row
839 label.delete_row = Delete This Row
840 label.show_all_hidden_rows = Show All Hidden Rows
841 label.export_annotation = Export Annotation
842 label.copy_consensus_sequence = Copy Consensus Sequence
845 label.rna_helix = RNA Helix
846 label.remove_annotation = Remove Annotation
847 label.colour_by = Colour by...
848 label.muscle_multiple_protein_sequence_alignment = Muscle Multiple Protein Sequence Alignment
849 label.mafft_multiple_sequence_alignment = MAFFT Multiple Sequence Alignment
850 label.clustalw_multiple_sequence_alignment = ClustalW Multiple Sequence Alignment
851 label.jnet_secondary_structure_prediction = JPred Secondary Structure Prediction
852 label.multiharmony = Multi-Harmony
853 label.unable_start_web_service_analysis = Unable to start web service analysis
854 label.job_couldnt_be_started_check_input = The Job couldn't be started. Please check your input, and the Jalview console for any warning messages.
855 label.prompt_each_time = Prompt each time
856 label.couldnt_save_project = Couldn't save project
857 label.error_whilst_saving_current_state_to = Error whilst saving current state to {0}
858 label.error_whilst_loading_project_from = Error whilst loading project from {0}
859 label.couldnt_load_project = Couldn't load project
860 label.invalid_name_preset_exists = Invalid name - preset already exists.
861 label.invalid_name = Invalid name
862 label.set_proxy_settings = Please set up your proxy settings in the 'Connections' tab of the Preferences window
863 label.proxy_authorization_failed = Proxy Authorization Failed
864 label.internal_jalview_error = Internal Jalview Error
865 label.secondary_structure_prediction_service_couldnt_be_located = The Secondary Structure Prediction Service named {0} at {1} couldn''t be located.
866 label.service_called_is_not_msa_service = The Service called \n{0}\nis not a \nMultiple Sequence Alignment Service\!
867 label.msa_service_is_unknown = The Multiple Sequence Alignment Service named {0} is unknown
868 label.service_called_is_not_seq_search_service = The Service called \n{0}\nis not a \nSequence Search Service\!
869 label.seq_search_service_is_unknown = The Sequence Search Service named {0} is unknown
870 label.feature_type = Feature Type
872 label.service_url = Service URL
873 label.copied_sequences = Copied sequences
874 label.cut_sequences = Cut Sequences
875 label.conservation_colour_increment = Conservation Colour Increment ({0})
876 label.percentage_identity_threshold = Percentage Identity Threshold ({0})
877 label.error_unsupported_owwner_user_colour_scheme = Unsupported owner for User Colour scheme dialog
878 label.save_alignment_to_file = Save Alignment to file
879 label.save_features_to_file = Save Features to File
880 label.save_annotation_to_file = Save Annotation to File
881 label.save_pdb_file = Save PDB File
882 label.save_text_to_file = Save Text to File
883 label.save_state = Save State
884 label.restore_state = Restore State
885 label.saving_jalview_project = Saving jalview project {0}
886 label.load_feature_colours = Load Feature Colours
887 label.save_feature_colours = Save Feature Colour Scheme
888 label.select_startup_file = Select startup file
889 label.select_default_browser = Select default web browser
890 label.save_tree_as_newick = Save tree as newick file
891 label.save_colour_scheme = Save colour scheme
892 label.edit_params_for = Edit parameters for {0}
893 label.choose_filename_for_param_file = Choose a filename for this parameter file
894 label.save_as_html = Save as HTML
895 label.recently_opened = Recently Opened
896 label.blasting_for_unidentified_sequence_jobs_running = BLASTing for unidentified sequences - {0} jobs running.
898 label.tree_from = Tree from {0}
899 label.webservice_job_title = {0} using {1}
900 label.select_visible_region_of = selected {0} region of {1}
901 label.visible = Visible
902 label.select_unselect_visible_regions_from = select and unselected {0} regions from {1}
903 label.visible_region_of = visible region of
904 label.webservice_job_title_on = {0} using {1} on {2}
905 label.loading_file = Loading File: {0}
906 label.edit_params = Edit {0}
907 label.as_percentage = As Percentage
908 error.not_implemented = Not implemented
909 error.no_such_method_as_clone1_for = No such method as clone1 for {0}
910 error.null_from_clone1 = Null from clone1!
911 error.not_yet_implemented = Not yet implemented
912 error.unknown_type_dna_or_pep = Unknown Type {0} - dna or pep are the only allowed values.
913 error.implementation_error_dont_know_threshold_annotationcolourgradient = Implementation error: don't know about threshold setting for current AnnotationColourGradient.
914 error.invalid_separator_parameter = Invalid separator parameter - must be non-zero length
915 error.alignment_cigararray_not_implemented = Alignment(CigarArray) not yet implemented
916 error.empty_view_cannot_be_updated = empty view cannot be updated.
917 error.mismatch_between_number_of_sequences_in_block = Mismatch between number of sequences in block {0} ({1}) and the original view ({2})
918 error.padding_not_yet_implemented = Padding not yet implemented
919 error.mismatch_between_visible_blocks_to_update_and_number_of_contigs_in_view = Mismatch between visible blocks to update and number of contigs in view (contigs=0,blocks={0})
920 error.unknown_seq_cigar_operation = Unknown SeqCigar operation {0}
921 error.implementation_bug_parse_cigar_string = Implementation bug in parseCigarString
922 error.implementation_error_invalid_operation_string = Implementation error. Invalid operation string.
923 error.invalid_range_string = Invalid range string (must be zero or positive number)
924 error.implementation_error_delete_range_out_of_bounds = Implementation Error: deleteRange out of bounds: start must be non-negative and less than end.
925 error.implementation_error = Implementation error
926 error.implementation_error_unknown_operation = Implementation Error! Unknown operation {0}
927 error.implementation_error_unexpected_null_from_get_sequence_and_deletions = Implementation Error - unexpected null from getSequenceAndDeletions
928 error.implementation_error_set_seq_null = Implementation Error - _setSeq(null,...)
929 error.implementation_error_s = Implementation Error: _s= {0}
930 error.implementation_error_seqcigar_possible = SeqCigar: Possible implementation error: sequence is longer than dataset sequence
931 error.implmentation_bug_seq_null = Implementation Bug. Null seq
932 error.implementation_bug_cigar_operation_list_range_list = Implementation Bug. Cigar Operation list!= range list
933 error.not_yet_implemented_cigar_object_from_cigar_string = NOT YET Implemented: Constructing a Cigar object from a cigar string and a gapped sequence.
934 error.implementation_bug_cigar_operation = Implementation Bug. Cigar Operation {0} {1} not one of {2}, {3}, or {4}.
935 error.implementation_error_for_new_cigar = Implementation error for new Cigar(SequenceI)
936 error.implementation_error_cigar_seq_no_operations = Implementation error: {0}th sequence Cigar has no operations.
937 error.implementation_error_no_pdbentry_from_index = Implementation error - no corresponding pdbentry (for index {0}) to add sequences mappings to
938 error.jmol_version_not_compatible_with_jalview_version = Jmol version {0} is not compatible with this version of Jalview. Report this problem at issues.jalview.org
939 error.not_implemented_remove = Remove: Not implemented
940 error.not_implemented_clone = Clone: Not implemented
941 error.call_setprogressbar_before_registering_handler = call setProgressBar before registering the progress bar's handler.
942 label.cancelled_params = Cancelled {0}
943 error.implementation_error_cannot_show_view_alignment_frame = Implementation error: cannot show a view from another alignment in an AlignFrame.
944 error.implementation_error_dont_know_about_threshold_setting = Implementation error: don't know about threshold setting for current AnnotationColourGradient.
945 label.groovy_support_failed = Jalview Groovy Support Failed
946 label.couldnt_create_groovy_shell = Couldn't create the groovy Shell. Check the error log for the details of what went wrong.
947 error.unsupported_version_calcIdparam = Unsupported Version for calcIdparam {0}
948 error.implementation_error_cant_reorder_tree = Implementation Error: Can't reorder this tree. Not DefaultMutableTreeNode.
949 error.invalid_value_for_option = Invalid value ''{0}'' for option ''{1}''
950 error.implementation_error_cannot_import_vamsas_doc = Implementation Error - cannot import existing vamsas document into an existing session, Yet!
951 label.vamsas_doc_couldnt_be_opened_as_new_session = VAMSAS Document could not be opened as a new session - please choose another
952 error.setstatus_called_non_existent_job_pane = setStatus called for non-existent job pane {0}
953 error.implementation_error_cannot_find_marshaller_for_param_set =Implementation error: Can't find a marshaller for the parameter set
954 error.implementation_error_old_jalview_object_not_bound =IMPLEMENTATION ERROR: old jalview object is not bound ! ({0})
955 error.implementation_error_vamsas_doc_class_should_bind_to_type = Implementation Error: Vamsas Document Class {0} should bind to a {1} (found a {2})
956 error.invalid_vamsas_rangetype_cannot_resolve_lists = Invalid vamsas RangeType - cannot resolve both lists of Pos and Seg from choice!
957 error.implementation_error_cannot_have_null_alignment = Implementation error: Cannot have null alignment property key
958 error.implementation_error_null_fileparse = Implementation error. Null FileParse in copy constructor
959 error.implementation_error_structure_selection_manager_null = Implementation error. Structure selection manager's context is 'null'
960 exception.ssm_context_is_null = SSM context is null
961 error.idstring_seqstrings_only_one_per_sequence = idstrings and seqstrings contain one string each per sequence
962 error.cannot_have_mixed_length_replacement_vectors = Cannot have mixed length replacement vectors. Replacement vector for {0} is {1} strings long, and have already seen a {2} length vector.
963 error.cannot_have_zero_length_vector_replacement_strings = Cannot have zero length vector of replacement strings - either 1 value or n values.
964 error.implementation_error_multiple_single_sequence_prediction_jobs_not_supported = Implementation Error! Multiple single sequence prediction jobs are not yet supported
965 error.implementation_error_invalid_msa_index_for_job =Implementation Error! Invalid msaIndex for JPredJob on parent MSA input object!
966 error.implementation_error_startjob_called = Implementation error - StartJob(JpredJob) called on {0}
967 error.multiple_jnet_subjob_merge_not_implemented = Multiple JPred subjob merging not yet implemented
968 label.job_never_ran = Job never ran - input returned to user.
969 error.implementation_error_minlen_must_be_greater_zero = Implementation error: minlen must be zero or more
970 error.implementation_error_msawbjob_called = Implementation error - StartJob(MsaWSJob) called on a WSJobInstance {0}
971 error.implementation_error_cannot_attach_ws_menu_entry = IMPLEMENTATION ERROR: cannot attach WS Menu Entry without service handle reference!
972 error.parameter_migration_not_implemented_yet = Parameter migration not implemented yet
973 error.implementation_error_valuetype_doesnt_support_jabaws_type = IMPLEMENTATION ERROR: jalview.ws.params.ValueConstrainI.ValueType does not support the JABAWS type : {0}
974 error.cannot_create_jabaws_param_set = Cannot create a JabaWSParamSet from non-JabaWS parameters
975 error.cannot_set_arguments_to_jabaws_param_set = Cannot set arguments to a JabaWSParamSet that are not JabaWS arguments
976 error.implementation_error_runner_config_not_available = Implementation Error: Runner Config not available for a JABAWS service of type {0} ({1})
977 error.implementation_error_cannot_handle_jaba_param = Implementation Error: Cannot handle Jaba parameter object {0}
978 error.implementation_error_attempt_to_delete_service_preset = Implementation error: Attempt to delete a service preset!
979 error.implementation_error_cannot_locate_oldname_presetname = Implementation error: Can''t locate either oldname ({0}) or presetName ({1}) in the datastore!"
980 error.implementation_error_jabaws_param_set_only_handled_by = Implementation error: JabaWsParamSets can only be handled by JabaParamStore
981 error.cannot_set_source_file_for = Cannot set source file for {0}
982 error.mismatch_service_instance_preset = Probable mismatch between service instance and preset!
983 error.cannot_set_params_for_ws_preset = Cannot set Parameters for a Jaba Web service's preset
984 error.implementation_error_can_only_instantiate_jaba_param_sets = Implementation error: Can only instantiate Jaba parameter sets
985 error.no_aacon_service_found = No AACon service found
986 error.implementation_error_couldnt_copy_value_constraint = Implementation error: could not copy ValueConstrain!
987 error.couldnt_encode_as_utf8 = Couldn''t encode {0} as UTF-8.
988 error.tree_inputtype_not_yet_implemented = Tree InputType not yet implemented
989 error.implementation_error_need_to_have_httpresponse = Implementation Error: need to have an HttpResponse to process
990 error.dbrefsource_implementation_exception =DBRefSource Implementation Exception
991 error.implementation_error_dbinstance_must_implement_interface = Implmentation Error - getDbInstances must be given a class that implements jalview.ws.seqfetcher.DbSourceProxy (was given{0})
992 error.implementation_error_must_init_dbsources =Implementation error. Must initialise dbSources
993 label.view_controller_toggled_marked = {0} {1} columns {2} features of type {3} across {4} sequence(s)
994 label.no_highlighted_regions_marked = No highlighted regions marked
995 label.toggled = Toggled
996 label.marked = Marked
997 label.containing = containing
998 label.not_containing = not containing
999 label.no_feature_of_type_found = No features of type {0} found
1000 label.no_feature_found_selection = No features of type {0} found in selection
1001 label.submission_params = Submission {0}
1002 label.empty_alignment_job = Empty Alignment Job
1003 label.add_new_sbrs_service = Add a new Simple Bioinformatics Rest Service
1004 label.edit_sbrs_entry = Edit Simple Bioinformatics Rest Service entry
1005 label.pca_recalculating = Recalculating PCA
1006 label.pca_calculating = Calculating PCA
1007 label.select_foreground_colour = Choose foreground colour
1008 label.select_colour_for_text = Select Colour for Text
1009 label.adjust_foreground_text_colour_threshold = Adjust Foreground Text Colour Threshold
1010 label.select_subtree_colour = Select Sub-Tree Colour
1011 label.create_new_sequence_features = Create New Sequence Feature(s)
1012 label.amend_delete_features = Amend/Delete Features for {0}
1013 exception.out_of_bounds_for_file = Out of bounds for file: i={0}, Final Buffer: i0={1} iend={2}
1014 exception.null_string_given_to_regex_search = Null String Given to Regex.search
1015 exception.null_string_like_given_to_regex_search = Null StringLike Given to Regex.search
1016 exception.null_string_given_to_regex_reverse_search = Null String Given to Regex.reverseSearch
1017 exception.null_string_like_given_to_regex_reverse_search = Null StringLike Given to Regex.reverseSearch
1018 exception.null_string_like_given_to_regex_search_from = Null String Given to Regex.searchFrom
1019 exception.null_string_like_given_to_regex_search_region = Null String Given to Regex.searchRegion
1020 exception.replace_null_regex_pointer = Replacer has null Regex pointer
1021 exception.bad_pattern_to_regex_perl_code = bad pattern to Regex.perlCode: {0}
1022 exception.no_stub_implementation_for_interface = There is no stub implementation for the interface: {0}
1023 exception.cannot_set_endpoint_address_unknown_port = Cannot set Endpoint Address for Unknown Port {0}
1024 exception.mismatched_unseen_closing_char = Mismatched (unseen) closing character {0}
1025 exception.mismatched_closing_char = Mismatched closing character {0}
1026 exception.mismatched_opening_char = Mismatched opening character {0} at {1}
1027 exception.invalid_datasource_couldnt_obtain_reader = Invalid datasource. Could not obtain Reader
1028 exception.unterminated_cigar_string = Unterminated cigar string
1029 exception.unexpected_operation_cigar_string_pos = Unexpected operation {0} in cigar string (position {1} in {2}
1030 exception.couldnt_parse_responde_from_annotated3d_server = Couldn't parse response from Annotate3d server
1031 exception.application_test_npe = Application test: throwing an NullPointerException It should arrive at the console
1032 exception.overwriting_vamsas_id_binding = Overwriting vamsas id binding
1033 exception.overwriting_jalview_id_binding = Overwriting jalview id binding
1034 exception.failed_to_resolve_gzip_stream = Failed to resolve GZIP stream
1035 exception.problem_opening_file_also_tried = Problem opening {0} (also tried {1}) : {2}
1036 exception.problem_opening_file = Problem opening {0} : {1}
1037 exception.failed_to_read_data_from_source = Failed to read data from source: {0}
1038 exception.no_init_source_stream = Unitialised Source Stream
1039 exception.invalid_source_stream = Invalid Source Stream: {0}
1040 error.implementation_error_reset_called_for_invalid_source = Implementation Error: Reset called for invalid source.
1041 exception.number_of_residues_in_query_sequence_differ_from_prediction = Number of residues in {0} supposed query sequence ({1}\n{2})\ndiffer from number of prediction sites in prediction ({3})
1042 label.mapped = mapped
1043 exception.jpredconcide_entry_has_unexpected_number_of_columns = JPredConcise: Entry ({0}) has an unexpected number of columns
1044 exception.couldnt_parse_concise_annotation_for_prediction = Couldn''t parse concise annotation for prediction profile.\n{0}
1045 exception.newfile = NewickFile\: {0}\n
1046 label.no_tree_read_in = No Tree read in
1047 exception.rnaml_couldnt_access_datasource = Couldn''t access datasource ({0})
1048 exception.ranml_couldnt_process_data = Couldn''t process data as RNAML file ({0})
1049 exception.ranml_invalid_file = Invalid RNAML file ({0})
1050 exception.ranml_problem_parsing_data = Problem parsing data as RNAML ({0})
1051 exception.pfam_no_sequences_found = No sequences found (PFAM input)
1052 exception.stockholm_invalid_format = This file is not in valid STOCKHOLM format: First line does not contain '# STOCKHOLM'
1053 exception.couldnt_parse_sequence_line = Could not parse sequence line: {0}
1054 exception.unknown_annotation_detected = Unknown annotation detected: {0} {1}
1055 exception.couldnt_store_sequence_mappings = Couldn''t store sequence mappings for {0}
1056 exception.matrix_too_many_iteration = Too many iterations in {0} (max is {1})
1057 exception.browser_not_found = Exception in finding browser: {0}
1058 exception.browser_unable_to_launch = Unable to launch browser: {0}
1059 exception.browser_unable_to_locate = Unable to locate browser: {0}
1060 exception.browser_os_not_supported = Launching browser on this operating system not supported. Use URL\n{0}
1061 exception.invocation_target_exception_creating_aedesc = InvocationTargetException while creating AEDesc: {0}
1062 exception.illegal_access_building_apple_evt= IllegalAccessException while building AppleEvent: {0}
1063 exception.unable_to_launch_url = Unable to launch URL: {0}
1064 exception.unable_to_create_internet_config = Unable to create an Internet Config instance: {0}
1065 exception.invocation_target_calling_url = InvocationTargetException while calling openURL: {0}
1066 exception.illegal_access_calling_url = IllegalAccessException while calling openURL: {0}
1067 exception.interrupted_launching_browser = InterruptedException while launching browser: {0}
1068 exception.no_pdb_records_for_chain = No PDB Records for {0} chain {1}
1069 exception.unexpected_handling_rnaml_translation_for_pdb = Unexpected exception when handling RNAML translation of PDB data
1070 exception.couldnt_recover_sequence_properties_for_alignment = Couldn't recover sequence properties for alignment
1071 exception.unknown_format_for_file = Unknown format {0} for file \: \n{1}
1072 label.remove_gaps = Remove Gaps
1073 exception.couldnt_recover_sequence_props_for_jnet_query = Couldn't recover sequence properties for JPred Query sequence!
1074 exception.server_timeout_try_later = Server timed out - try again later\n
1075 exception.web_service_returned_null_try_later= Server at {0} returned null object, it probably cannot be contacted. Try again later.
1076 exception.cannot_contact_service_endpoint_at = Cannot contact service endpoint at {0}
1077 error.implementation_error_cannot_find_service_url_in_given_set = Implementation error: Cannot find service url in the given url set!
1078 error.implementation_error_cannot_find_service_url_in_given_set_param_store = Implementation error: Cannot find service url in the given url set for this service parameter store ({0}}
1079 exception.jobsubmission_invalid_params_set = Invalid parameter set. Check Jalview implementation
1080 exception.notvaliddata_group_contains_less_than_min_seqs = Group contains less than {0} sequences.
1081 exception.outofmemory_loading_pdb_file = Out of memory loading PDB File
1082 exception.eps_method_not_supported = Method not currently supported by EpsGraphics2D version {0}
1083 exception.eps_unable_to_get_inverse_matrix = Unable to get inverse of matrix: {0}
1084 warn.job_cannot_be_cancelled_close_window = This job cannot be cancelled.\nJust close the window.
1085 warn.service_not_supported = Service not supported!
1086 warn.input_is_too_big = Input is too big!
1087 warn.invalid_job_param_set = Invalid job parameter set!
1088 warn.oneseq_msainput_selection = The current selection only contains a single sequence. Do you want to submit all sequences for alignment instead ?
1089 info.job_couldnt_be_run_server_doesnt_support_program = Job could not be run because the server doesn''t support this program.\n{0}
1090 info.job_couldnt_be_run_exceeded_hard_limit = Job could not be run because it exceeded a hard limit on the server.\n{0}
1091 info.job_couldnt_be_run_incorrect_param_setting = Job could not be run because some of the parameter settings are not supported by the server.\n{0}\nPlease check to make sure you have used the correct parameter set for this service\!\n
1092 info.no_jobs_ran = No jobs ran
1093 info.failed_to_submit_prediction = Failed to submit the prediction\:\n{0} {1}
1094 info.invalid_jnet_job_result_data ={0}\n{1}\nInvalid JPred job result data\!\n{2}
1095 info.failed_to_submit_sequences_for_alignment = Failed to submit sequences for alignment.\nIt is most likely that there is a problem with the server.\nJust close the window\n
1096 info.alignment_object_method_notes = \nAlignment Object Method Notes\n
1097 info.server_exception = \n{0} Server exception\!\n{1}
1098 info.invalid_msa_input_mininfo = Need at least two sequences with at least 3 residues each, with no hidden regions between them.
1099 info.invalid_msa_notenough = Not enough sequence data to align
1100 status.processing_commandline_args = Processing commandline arguments...
1101 status.das_features_being_retrived = DAS features being retrieved...
1102 status.searching_for_sequences_from = Searching for sequences from {0}
1103 status.finished_searching_for_sequences_from = Finished searching for sequences from {0}
1104 label.eps_file = EPS file
1105 label.png_image = PNG image
1106 status.export_complete = {0} Export completed
1107 status.fetching_pdb = Fetching PDB {0}
1108 status.refreshing_news = Refreshing news
1109 status.opening_params = Opening {0}
1110 status.fetching_sequence_queries_from = Fetching {0} sequence queries from {1}
1111 status.finshed_querying = Finished querying
1112 status.parsing_results = Parsing results.
1113 status.processing = Processing...
1114 status.refreshing_web_service_menus = Refreshing Web Service Menus
1115 status.collecting_job_results = Collecting job results.
1116 status.fetching_db_refs = Fetching db refs
1117 status.loading_cached_pdb_entries = Loading Cached PDB Entries
1118 status.searching_for_pdb_structures = Searching for PDB Structures
1119 status.searching_3d_beacons = Searching 3D Beacons
1120 status.no_structures_discovered_from_3d_beacons = No models discovered from 3D Beacons
1121 status.opening_file_for = opening file for
1122 status.colouring_structures = Colouring structures
1123 label.font_doesnt_have_letters_defined = Font doesn't have letters defined\nso cannot be used\nwith alignment data
1124 label.font_too_small = Font size is too small
1125 warn.out_of_memory_when_action = Out of memory when {0}\!\!\nSee help files for increasing Java Virtual Machine memory.
1126 warn.out_of_memory_loading_file = Out of memory loading file {0}\!\!\nSee help files for increasing Java Virtual Machine memory.
1127 label.out_of_memory = Out of memory
1128 label.invalid_id_column_width = Invalid ID Column width
1129 warn.user_defined_width_requirements = The user defined width for the\nannotation and sequence ID columns\nin exported figures must be\nat least 12 pixels wide.
1130 warn.server_didnt_pass_validation = Service did not pass validation.\nCheck the Jalview Console for more details.
1131 warn.url_must_contain = Sequence URL must contain $SEQUENCE_ID$, $DB_ACCESSION$, or a regex
1132 warn.urls_not_contacted = URLs that could not be contacted
1133 warn.urls_no_jaba = URLs without any JABA Services
1134 info.validate_jabaws_server = Validate JabaWS Server ?\n(Look in console output for results)
1135 label.test_server = Test Server?
1136 label.new_sequence_fetcher = New Sequence Fetcher
1137 label.additional_sequence_fetcher = Additional Sequence Fetcher
1138 label.select_database_retrieval_source = Select Database Retrieval Source
1139 label.overwrite_existing_file = Overwrite existing file?
1140 label.file_already_exists = File exists
1141 label.edit_jabaws_url = Edit JABAWS URL
1142 label.add_jabaws_url = Add new JABAWS URL
1143 label.news_from_jalview = News from http://www.jalview.org
1144 label.cut_paste_alignmen_file = Cut & Paste Alignment File
1145 label.enter_redundancy_threshold = Enter the redundancy threshold
1146 label.select_dark_light_set_threshold = <html><i>Select a dark and light text colour, then set the threshold to<br>switch between colours, based on background colour</i></html>
1147 label.select_feature_colour = Select Feature Colour
1148 label.delete_all = Delete all sequences
1149 warn.delete_all = <html>Deleting all sequences will close the alignment window.<br>Confirm deletion or Cancel.
1150 label.add_annotations_for = Add annotations for
1151 action.choose_annotations = Choose Annotations...
1152 label.choose_annotations = Choose Annotations
1155 label.invalid_search = Search string invalid
1156 error.invalid_regex = Invalid regular expression
1157 label.ignore_gaps_consensus = Ignore Gaps In Consensus
1158 label.show_group_histogram = Show Group Histogram
1159 label.show_group_logo = Show Group Logo
1160 label.normalise_group_logo = Normalise Group Logo
1161 label.show_histogram = Show Histogram
1162 label.show_logo = Show Logo
1163 label.normalise_logo = Normalise Logo
1164 label.no_colour_selection_in_scheme = Please make a colour selection before applying colour scheme
1165 label.no_colour_selection_warn = Error saving colour scheme
1166 label.open_split_window? = Would you like to open as a split window, with cDNA and protein linked?
1167 label.open_split_window = Open split window
1171 label.select_by_annotation = Select/Hide Columns by Annotation
1172 action.select_by_annotation = Select/Hide Columns by Annotation...
1173 label.threshold_filter = Threshold Filter
1174 label.alpha_helix = Alpha Helix
1175 label.beta_strand = Beta Strand
1177 label.select_all = Select All
1178 label.structures_filter = Structures Filter
1179 label.search_filter = Search Filter
1180 label.include_description= Include Description
1182 label.hide_insertions = Hide Insertions
1183 label.mark_as_representative = Mark as representative
1184 label.open_jabaws_web_page = Open JABAWS web page
1185 label.pdb_sequence_fetcher = PDB Sequence Fetcher
1186 label.result = result
1187 label.results = results
1188 label.structure_chooser = Structure Chooser
1189 label.invert = Invert
1190 label.select_pdb_file = Select PDB File
1191 info.select_filter_option = Select Filter Option/Manual Entry
1192 info.associate_wit_sequence = Associate with Sequence
1193 label.search_result = Search Result
1194 label.found_structures_summary = Found Structures Summary
1195 label.configure_displayed_columns = Customise Displayed Options
1196 label.start_jalview = Start Jalview
1197 label.biojs_html_export = BioJS
1198 label.scale_as_cdna = Scale protein residues to codons
1199 label.font_as_cdna = Use same font for cDNA and peptide
1200 label.scale_protein_to_cdna = Scale Protein to cDNA
1201 label.scale_protein_to_cdna_tip = Make protein residues same width as codons in split frame views
1202 info.select_annotation_row = Select Annotation Row
1203 info.enter_search_text_here = Enter Search Text Here
1204 info.enter_search_text_to_enable = Enter Search Text to Enable
1205 info.search_in_annotation_label = Search in {0} Label
1206 info.search_in_annotation_description = Search in {0} Description
1207 info.change_threshold_mode_to_enable = Change Threshold Mode to Enable
1208 label.couldnt_read_data = Couldn't read data
1209 label.embbed_biojson = Embed BioJSON to HTML export
1210 action.export_groups = Export Groups
1211 action.export_annotations = Export Annotations
1212 action.export_hidden_columns = Export Hidden Columns
1213 action.export_hidden_sequences = Export Hidden Sequences
1214 action.export_features = Export Features
1215 label.export_settings = Export Settings
1216 label.pdb_web-service_error = PDB Web-service Error
1217 label.structure_chooser_manual_association = Structure Chooser - Manual association
1218 label.structure_chooser_filter_time = Structure Chooser - Filter time ({0})
1219 label.structure_chooser_no_of_structures = Structure Chooser - {0} Found ({1})
1220 info.no_pdb_entry_found_for = No PDB entry found for {0}
1221 exception.unable_to_detect_internet_connection = Jalview is unable to detect an internet connection
1222 exception.fts_server_unreachable = Jalview is unable to reach the {0} server. \nPlease ensure that you are connected to the internet and try again.
1223 label.nw_mapping = Needleman & Wunsch Alignment
1224 label.sifts_mapping = SIFTs Mapping
1225 label.mapping_method = Sequence \u27f7 Structure mapping method
1226 status.cancelled_image_export_operation = Cancelled {0} export operation
1227 info.error_creating_file = Error creating {0} file
1228 exception.outofmemory_loading_mmcif_file = Out of memory loading mmCIF File
1229 label.run_groovy = Run Groovy console script
1230 label.run_groovy_tip = Run the script in the Groovy console over this alignment
1231 label.couldnt_run_groovy_script = Failed to run Groovy script
1232 label.uniprot_sequence_fetcher = UniProt Sequence Fetcher
1233 action.next_page= >>
1234 action.prev_page= <<
1235 label.next_page_tooltip=Next Page
1236 label.prev_page_tooltip=Previous Page
1237 status.launching_3d_structure_viewer = Launching 3D Structure viewer...
1238 status.fetching_3d_structures_for_selected_entries = Fetching 3D Structures for selected entries...
1239 status.fetching_dbrefs_for_sequences_without_valid_refs = Fetching db refs for {0} sequence(s) without valid db ref required for SIFTS mapping
1240 status.fetching_3d_structures_for = Fetching 3D Structure for {0}
1241 status.obtaining_mapping_with_sifts = Obtaining mapping with SIFTS
1242 status.obtaining_mapping_with_nw_alignment = Obtaining mapping with NW alignment
1243 status.exporting_alignment_as_x_file = Exporting alignment as {0} file
1244 label.column = Column
1245 label.cant_map_cds = Unable to map CDS to protein\nCDS missing or incomplete
1246 label.operation_failed = Operation failed
1247 label.SEQUENCE_ID_no_longer_used = $SEQUENCE_ID$ is no longer used for DB accessions
1248 label.SEQUENCE_ID_for_DB_ACCESSION1 = Please review your URL links in the 'Connections' tab of the Preferences window:
1249 label.SEQUENCE_ID_for_DB_ACCESSION2 = URL links using '$SEQUENCE_ID$' for DB accessions now use '$DB_ACCESSION$'.
1250 label.do_not_display_again = Do not display this message again
1251 exception.url_cannot_have_duplicate_id = {0} cannot be used as a label for more than one line
1252 action.customfilter = Custom only
1253 action.showall = Show All
1254 label.insert = Insert:
1255 action.seq_id = $SEQUENCE_ID$
1256 action.db_acc = $DB_ACCESSION$
1257 label.primary = Double Click
1258 label.inmenu = In Menu
1260 label.database = Database
1261 label.urltooltip = Only one url, which must use a sequence id, can be selected for the 'On Click' option
1262 label.edit_sequence_url_link = Edit sequence URL link
1263 warn.name_cannot_be_duplicate = User-defined URL names must be unique and cannot be MIRIAM ids
1264 label.output_seq_details = Output Sequence Details to list all database references
1265 label.urllinks = Links
1266 action.clear_cached_items = Clear Cached Items
1267 label.togglehidden = Show hidden regions
1268 label.quality_descr = Alignment Quality based on Blosum62 scores
1269 label.conservation_descr = Conservation of total alignment less than {0}% gaps
1270 label.consensus_descr = PID
1271 label.complement_consensus_descr = PID for cDNA
1272 label.strucconsensus_descr = PID for base pairs
1273 label.occupancy_descr = Number of aligned positions
1274 label.show_experimental = Enable experimental features
1275 label.show_experimental_tip = Enable any new and currently 'experimental' features (see Latest Release Notes for details)
1276 label.warning_hidden = Warning: {0} {1} is currently hidden
1277 label.overview_settings = Overview settings
1278 label.ov_legacy_gap = Use legacy gap colouring (gaps are white)
1279 label.gap_colour = Gap colour:
1280 label.ov_show_hide_default = Show hidden regions when opening overview
1281 label.hidden_colour = Hidden colour:
1282 label.select_gap_colour = Select gap colour
1283 label.select_hidden_colour = Select hidden colour
1284 label.overview = Overview
1285 label.reset_to_defaults = Reset to defaults
1286 label.oview_calc = Recalculating overview...
1287 label.feature_details = Feature details
1288 label.matchCondition_contains = Contains
1289 label.matchCondition_notcontains = Does not contain
1290 label.matchCondition_matches = Matches
1291 label.matchCondition_notmatches = Does not match
1292 label.matchCondition_present = Is present
1293 label.matchCondition_notpresent = Is not present
1294 label.matchCondition_eq = =
1295 label.matchCondition_ne = not =
1296 label.matchCondition_lt = <
1297 label.matchCondition_le = <=
1298 label.matchCondition_gt = >
1299 label.matchCondition_ge = >=
1300 label.numeric_required = The value should be numeric
1301 label.filter = Filter
1302 label.filters = Filters
1303 label.join_conditions = Join conditions with
1304 label.delete_condition = Delete this condition
1306 label.colour_by_label = Colour by label
1307 label.variable_colour = Variable colour...
1308 label.select_colour_for = Select colour for {0}
1309 option.enable_disable_autosearch = When ticked, search is performed automatically
1310 option.autosearch = Autosearch
1311 label.retrieve_ids = Retrieve IDs
1312 label.display_settings_for = Display settings for {0} features
1313 label.simple_colour = Simple Colour
1314 label.colour_by_text = Colour by text
1315 label.graduated_colour = Graduated Colour
1316 label.by_text_of = By text of
1317 label.by_range_of = By range of
1320 label.sequence_feature_colours = Sequence Feature Colours
1321 label.best_quality = Best Quality
1322 label.best_resolution = Best Resolution
1323 label.most_protein_chain = Most Protein Chain
1324 label.most_bound_molecules = Most Bound Molecules
1325 label.most_polymer_residues = Most Polymer Residues
1326 label.cached_structures = Cached Structures
1327 label.free_text_search = Free Text Search
1328 label.annotation_name = Annotation Name
1329 label.annotation_description = Annotation Description
1330 label.edit_annotation_name_description = Edit Annotation Name/Description
1331 label.alignment = alignment
1333 label.create_image_of = Create {0} image of {1}
1334 label.click_to_edit = Click to edit, right-click for menu
1335 label.backupfiles_confirm_delete = Confirm delete
1336 label.backupfiles_confirm_delete_old_files = Delete the following older backup files? (see the Backups tab in Preferences for more options)
1337 label.backupfiles_confirm_save_file = Confirm save file
1338 label.backupfiles_confirm_save_file_backupfiles_roll_wrong = Something possibly went wrong with the backups of this file.
1339 label.backupfiles_confirm_save_new_saved_file_ok = The new saved file seems okay.
1340 label.backupfiles_confirm_save_new_saved_file_not_ok = The new saved file might not be okay.
1341 label.continue_operation = Continue operation?
1342 label.continue = Continue
1343 label.backups = Backups
1344 label.backup = Backup
1345 label.backup_files = Backup Files
1346 label.enable_backupfiles = Enable backup files
1347 label.backup_filename_strategy = Backup filename strategy
1348 label.append_to_filename = Append to filename (%n is replaced by the backup number)
1349 label.append_to_filename_tooltip = %n in the text will be replaced by the backup number. The text will appear after the filename. See the summary box above.
1350 label.index_digits = Number of digits to use for the backup number (%n)
1351 label.scheme_examples = Scheme examples
1352 label.increment_index = Increase appended text numbers - newest file has largest number.
1353 label.reverse_roll = "Roll" appended text numbers - newest backup file is always number 1.
1354 label.keep_files = Deleting old backup files
1355 label.keep_all_backup_files = Do not delete old backup files
1356 label.keep_only_this_number_of_backup_files = Keep only this number of most recent backup files
1357 label.autodelete_old_backup_files = Auto-delete old backup files:
1358 label.always_ask = Always ask
1359 label.auto_delete = Automatically delete
1360 label.filename = filename
1361 label.braced_oldest = (oldest)
1362 label.braced_newest = (most recent)
1363 label.configuration = Configuration
1364 label.configure_feature_tooltip = Click to configure variable colour or filters
1365 label.schemes = Schemes
1366 label.customise = Customise
1367 label.custom = Custom
1368 label.default = Default
1369 label.single_file = Single backup
1370 label.keep_all_versions = Keep all versions
1371 label.rolled_backups = Rolled backup files
1372 label.customise_description = Select Customise, make changes, and click on OK to save your own custom scheme
1373 label.custom_description = Your own saved scheme
1374 label.default_description = Keep the last three versions of the file
1375 label.single_file_description = Keep the last version of the file
1376 label.keep_all_versions_description = Keep all previous versions of the file
1377 label.rolled_backups_description = Keep the last nine versions of the file from _bak.1 (newest) to _bak.9 (oldest)
1378 label.cancel_changes_description = Cancel changes made to your last saved Custom scheme
1379 label.no_backup_files = NO BACKUP FILES
1380 label.include_backup_files = Include backup files
1381 label.cancel_changes = Cancel changes
1382 label.warning_confirm_change_reverse = Warning!\nIf you change the increment/decrement of the backup filename number, without changing the suffix or number of digits,\nthis may cause loss of backup files created with the previous backup filename scheme.\nAre you sure you wish to do this?
1383 label.change_increment_decrement = Change increment/decrement?
1384 label.newerdelete_replacement_line = Backup file\n''{0}''\t(modified {2}, size {4})\nis to be deleted and replaced by apparently older file\n''{1}''\t(modified {3}, size {5}).
1385 label.confirm_deletion_or_rename = Confirm deletion of ''{0}'' or rename to ''{1}''?
1386 label.newerdelete_line = Backup file\n''{0}''\t(modified {2}, size {4})\nis to be deleted but is newer than the oldest remaining backup file\n''{1}''\t(modified {3}, size {5}).
1387 label.confirm_deletion = Confirm deletion of ''{0}''?
1388 label.delete = Delete
1389 label.rename = Rename
1391 label.file_info = (modified {0}, size {1})
1392 label.annotation_name = Annotation Name
1393 label.annotation_description = Annotation Description
1394 label.edit_annotation_name_description = Edit Annotation Name/Description
1395 label.alignment = alignment
1397 label.create_image_of = Create {0} image of {1}
1398 label.click_to_edit = Click to edit, right-click for menu
1399 label.by_annotation_tooltip = Annotation Colour is configured from the main Colour menu
1400 label.show_linked_features = Show {0} features
1401 label.on_top = on top
1402 label.include_linked_features = Include {0} features
1403 label.include_linked_tooltip = Include visible {0} features<br>converted to local sequence coordinates
1404 label.features_not_shown = {0} feature(s) not shown
1405 label.no_features_to_sort_by = No features to sort by
1406 label.ignore_hidden = Ignore hidden columns
1407 label.ignore_hidden_tooltip = Ignore any characters in hidden columns when matching
1408 label.log_level = Log level
1409 label.log_level_tooltip = Temporarily set the log level for this console. The log level will revert to {0} when this Java console is closed.
1410 label.copy_to_clipboard = Copy to clipboard
1411 label.copy_to_clipboard_tooltip = Copy all of the log text in this console to the system clipboard
1412 label.startup = Startup
1413 label.memory = Memory
1414 label.customise_memory_settings = Customise maximum memory settings
1415 label.memory_setting_text = New memory settings will only come into effect the next time you start Jalview
1416 label.maximum_memory_used = Maximum memory limited to both
1417 label.percent_of_physical_memory = Maximum percent of physical memory
1418 label.maximum_memory = Maximum absolute memory
1419 label.maximum_memory_tooltip = Enter memory as an integer number optionally followed by 'b', 'k', 'm', 'g' or 't'
1420 label.adjustments_for_this_computer = Adjustments for this computer
1421 label.memory_example_text = Maximum memory that would be used with these settings on this computer
1422 label.memory_example_tooltip = The memory allocated to Jalview is the smaller of the percentage of physical memory (default 90%) and the maximum absolute memory (default 32GB). If your computer's memory cannot be ascertained then the maximum absolute memory defaults to 8GB (if not customised).<br>Jalview will always try and reserve 512MB for the OS and at least 512MB for itself.
1423 warning.wrong_jvm_version_title = Wrong Java Version
1424 warning.wrong_jvm_version_message = The Java version being used (Java {0}) may lead to problems.\nThis installation of Jalview should be used with Java {1}.