schemas/document.xml

   1 <?xml version="1.0" encoding="UTF-8"?>
   2 <VamsasDocument xmlns="http://www.vamsas.ac.uk/vamsasDocument"
   3      xmlns:xsi="http://www.w3.org/2001/XMLSchema-instance"
   4      xsi:schemaLocation="http://www.vamsas.ac.uk/vamsasDocument file:/homes/jimp/prj/new-eclipse/VamsasClient/schemas/vamsasDocument.xsd">
   5     <Version>alpha</Version>
   6     <LockFile>some kind of resolvable session reference.</LockFile>
   7     <Provenance xmlns="http://www.vamsas.org">
   8         <entry>
   9             <User>Jim</User>
  10             <Action>updated the xml schema</Action>
  11             <Date>2006-01-17</Date>
  12         </entry>
  13     </Provenance>
  14     <VAMSAS xmlns="http://www.vamsas.org"></VAMSAS>
  15     <VAMSAS xmlns="http://www.vamsas.org" xmlns:xsi="http://www.w3.org/2001/XMLSchema-instance" xsi:schemaLocation="http://www.vamsas.org
  16         http://www.vamsas.ac.uk/build/VamsasClient/schemas/vamsas.xsd">
  17         <DataSet>
  18             <Sequence start="1" end="167" id="a1127235554296">
  19                 <sequence>KTAIITGGSRGIGKSIAIKLGKLGASIVLNYRNNTDALKNTIRELEDLNINVIAVQGDISNYKECEKIIKAALDKFNGIDILVNNAGITADNLILRMKEEEFDKVIETNLKGTFNCVKHCIPMIKRRYGKIINISSVVGVAGNVGQCNYAAAKAGVIGFTKSLAKEL</sequence>
  20                 <name>Q899P0</name>
  21             </Sequence>
  22             <Sequence start="1" end="168" id="a1127235554297">
  23                 <sequence>KIAIVTGASSGIGRAIAFKLASRGANLILGDVKIDELRKVAEEIAKETKVKVIPLYVNVGDFNSTKEFYNKGISELGVDYVDILVNNAGINRDALFVKMTYEQWDEVIKVDLYSMFNMTKQVVDMVKRNYGRIINISSLSWLGNIGQANYSAAKAGVIGFTKTLAREL</sequence>
  24                 <name>Q972M3</name>
  25             </Sequence>
  26             <Sequence start="1" end="167" id="a1127235554298">
  27                 <sequence>KVIVITGASSGIGEQVAMQVAEQGATPVLMARTEEKLKALADKIKETYNTPCYYYVLDVSEETEVQSVFSKVLQEVGRIDILVNNAGFGIFKTFEDASMDEVKDMFQVNVFGLVACTKAVLPYMVKRNGHIINIASLAGKIATPKSSAYAATKHAVLGFTNSLRMEL</sequence>
  28                 <name>Q81M93</name>
  29             </Sequence>
  30             <Sequence start="1" end="167" id="a1127235554299">
  31                 <sequence>KIALVTGAMGGLGTAICQALAKDGCIVAANCLPNFEPAAAWLGQQEALGFKFYVAEGDVSDFESCKAMVAKIEADLGPVDILVNNAGITRDKFFAKMDKAQWDAVIATNLSSLFNVTQQVSPKMERGWGRIINISSVNGVKGQAGQTNYSAAKAGVIGFTKALAAEL</sequence>
  32                 <name>NODG_AZOBR</name>
  33             </Sequence>
  34             <Sequence start="1" end="166" id="a1127235554300">
  35                 <sequence>QTAVVTGGGKGIGRAICLALAREGADIVIAARTEKDIRETARMVEKEGRKALPVSTDIRVEEDVENMISEAVDAFGRIDILVNNAGVAYRKYMVETSTEEYDNIMDTNLKGMFFCTKYALPYLLKREGRIINISSGAGKHGIPKLSIYSASKFAVIGFTESIAYEI</sequence>
  36                 <name>Q8PS57</name>
  37             </Sequence>
  38             <Sequence start="1" end="167" id="a1127235554301">
  39                 <sequence>KTAIVTGAARGIGKAIALKFAAEGANIAFTDLVIDENAEKTRVELEAMGVKAKGYASNAANFEDTAKVVEEIHKDFGRIDILVNNAGITRDGLMMRMSEQQWDMVINVNLKSAFNFIHACTPMMRQKAGSIINMASVVGVHGNAGQANYAASKAGMIALAKSIAQEL</sequence>
  40                 <name>Q8A195</name>
  41             </Sequence>
  42             <Sequence start="1" end="164" id="a1127235554302">
  43                 <sequence>KVVVVTGAGSGIGEATAKRFAHEGASVVLVGRNQEKLAKVAAQLKGAEHLIRATDVADLTDVEALFKEVAERFGRLDVLVNNAGVVKSGKVTELGVEDWKAVMSVDLDGVFYCTRTAMPALIASKGNIINVSSVSGLGGDWGMSFYNAAKGAITNFTRALALD</sequence>
  44                 <name>Q888G8</name>
  45             </Sequence>
  46             <Sequence start="1" end="164" id="a1127235554303">
  47                 <sequence>KVALVTGAANGIGLAIAERLYQEGATLALADWNEEQLAIVIEQFDSARVYAQKVDVSDPEQVQALVRKTVERFGRLDILVNNAGIHIPGTVLECSVQDWRRIASVNIDGVVYCAMHALPELIKTRGCMVNTASVSGLGGDWGAAFYCATKGAVVNFTRALALD</sequence>
  48                 <name>Q9KRP5</name>
  49             </Sequence>
  50             <Sequence start="1" end="163" id="a1127235554304">
  51                 <sequence>KIALVTGASRGIGRAIAELLVERGATVIGTATSEGGAAAISEYLGENGKGLALNVTDVESIEATLKAINDEFGAIDILVNNAGITRDNLLMRMKDDEWNDIINTNLTPIYRMSKAVLRMMKKRAGRIINVGSVVGTMGNAGQTNYAAAKAGVIGFTKSMAREV</sequence>
  52                 <name>Q87N22</name>
  53             </Sequence>
  54             <Alignment gapChar="-">
  55                 <alignmentSequence start="1" end="167" refid="a1127235554296">
  56                     <sequence>KTAIITGGSRGIGKSIAIKLGKLGASIVLNYRNNTDALKNTIRELEDLN--INVIAVQGDISNYKECEKIIKAALDKFNG--IDILVNNAGITADNLILRMKEEEFDKVIETNLKGTFNCVKHCIPMIKRRYGKIINISSVVGVAGNVGQCNYAAAKAGVIGFTKSLAKEL</sequence>
  57                     <name>Q899P0</name>
  58                 </alignmentSequence>
  59                 <alignmentSequence start="1" end="168" refid="a1127235554297">
  60                     <sequence>KIAIVTGASSGIGRAIAFKLASRGANLILGDVKIDEL--RKVAEEIAKETKVKVIPLYVNVGDFNSTKEFYNKGISELGVDYVDILVNNAGINRDALFVKMTYEQWDEVIKVDLYSMFNMTKQVVDMVKRNYGRIINISSLSWL-GNIGQANYSAAKAGVIGFTKTLAREL</sequence>
  61                     <name>Q972M3</name>
  62                 </alignmentSequence>
  63                 <alignmentSequence start="1" end="167" refid="a1127235554298">
  64                     <sequence>KVIVITGASSGIGEQVAMQVAEQGATPVLMARTEEKL--KALADKIKETYNTPCYYYVLDVSEETEVQSVFSKVLQEVGR--IDILVNNAGFGIFKTFEDASMDEVKDMFQVNVFGLVACTKAVLPYMVKRNGHIINIASLAGKIATPKSSAYAATKHAVLGFTNSLRMEL</sequence>
  65                     <name>Q81M93</name>
  66                 </alignmentSequence>
  67                 <alignmentSequence start="1" end="167" refid="a1127235554299">
  68                     <sequence>KIALVTGAMGGLGTAICQALAKDGCIVAANCLPNFEPAAAWLGQQEALG--FKFYVAEGDVSDFESCKAMVAKIEADLGP--VDILVNNAGITRDKFFAKMDKAQWDAVIATNLSSLFNVTQQVSPKMERGWGRIINISSVNGVKGQAGQTNYSAAKAGVIGFTKALAAEL</sequence>
  69                     <name>NODG_AZOBR</name>
  70                 </alignmentSequence>
  71                 <alignmentSequence start="1" end="166" refid="a1127235554300">
  72                     <sequence>QTAVVTGGGKGIGRAICLALAREGADIVIAARTEKDI--RETARMVEKEG-RKALPVSTDIRVEEDVENMISEAVDAFGR--IDILVNNAGVAYRKYMVETSTEEYDNIMDTNLKGMFFCTKYALPYLLKREGRIINISSGAGKHGIPKLSIYSASKFAVIGFTESIAYEI</sequence>
  73                     <name>Q8PS57</name>
  74                 </alignmentSequence>
  75                 <alignmentSequence start="1" end="167" refid="a1127235554301">
  76                     <sequence>KTAIVTGAARGIGKAIALKFAAEGANIAFTDLVIDENAEKTRVELEAMG--VKAKGYASNAANFEDTAKVVEEIHKDFGR--IDILVNNAGITRDGLMMRMSEQQWDMVINVNLKSAFNFIHACTPMMRQKAGSIINMASVVGVHGNAGQANYAASKAGMIALAKSIAQEL</sequence>
  77                     <name>Q8A195</name>
  78                 </alignmentSequence>
  79                 <alignmentSequence start="1" end="164" refid="a1127235554302">
  80                     <sequence>KVVVVTGAGSGIGEATAKRFAHEGASVVLVGRNQEKL--AKVAAQLKG---AEHLIRATDVADLTDVEALFKEVAERFGR--LDVLVNNAGVVKSGKVTELGVEDWKAVMSVDLDGVFYCTRTAMPALIASKGNIINVSSVSGLGGDWGMSFYNAAKGAITNFTRALALD-</sequence>
  81                     <name>Q888G8</name>
  82                 </alignmentSequence>
  83                 <alignmentSequence start="1" end="164" refid="a1127235554303">
  84                     <sequence>KVALVTGAANGIGLAIAERLYQEGATLALADWNEEQL--AIVIEQFDS---ARVYAQKVDVSDPEQVQALVRKTVERFGR--LDILVNNAGIHIPGTVLECSVQDWRRIASVNIDGVVYCAMHALPELIKTRGCMVNTASVSGLGGDWGAAFYCATKGAVVNFTRALALD-</sequence>
  85                     <name>Q9KRP5</name>
  86                 </alignmentSequence>
  87                 <alignmentSequence start="1" end="163" refid="a1127235554304">
  88                     <sequence>KIALVTGASRGIGRAIAELLVERGATVIGTATSEGGA--AAISEYLG----ENGKGLALNVTDVESIEATLKAINDEFGA--IDILVNNAGITRDNLLMRMKDDEWNDIINTNLTPIYRMSKAVLRMMKKRAGRIINVGSVVGTMGNAGQTNYAAAKAGVIGFTKSMAREV</sequence>
  89                     <name>Q87N22</name>
  90                 </alignmentSequence>
  91                 <Provenance>
  92                     <entry>
  93                         <User>jim</User>
  94                         <Action>edited</Action>
  95                         <Date>2005-12-21</Date>
  96                     </entry>
  97                 </Provenance>
  98             </Alignment>
  99             <Provenance>
 100                 <entry>
 101                     <User>jim</User>
 102                     <Action>edited</Action>
 103                     <Date>2005-11-21</Date>
 104                 </entry>
 105             </Provenance>
 106         </DataSet>
 107     </VAMSAS>
 108     <ApplicationData xmlns="http://www.vamsas.org" version="" name="" urn="">
 109         <dataReference>name of accompanying jar entry containing data</dataReference> <!-- alternative is base64 encoded string in <data></data> -->
 110         <User fullname="a user" organization="probably very little">
 111             <dataReference>another accompanying jar entry or the data tag with embedded data.</dataReference>
 112         </User>
 113     </ApplicationData>
 114 </VamsasDocument>
 115