schemas/vamsas15_9.xsd

   1 <?xml version="1.0" encoding="UTF-8"?>
   2 <!-- edited with XMLSPY v5 rel. 4 U (http://www.xmlspy.com) by MSD (EMBL OUTSTATION THE EBI WELLCOME TRUST GENOME CAMPUS) -->
   3 <!-- edited with XMLSpy v2005 rel. 3 U (http://www.altova.com) by lj (jl) -->
   4 <xs:schema xmlns:xs="http://www.w3.org/2001/XMLSchema" xmlns:vamsas="http://www.vamsas.org" targetNamespace="http://www.vamsas.org" elementFormDefault="qualified" attributeFormDefault="unqualified">
   5         <xs:element name="Version" type="xs:string"/>
   6         <xs:complexType name="LockFile">
   7                 <xs:simpleContent>
   8                         <xs:extension base="xs:string"/>
   9                 </xs:simpleContent>
  10         </xs:complexType>
  11         <xs:complexType name="VAMSAS">
  12                 <xs:sequence>
  13                         <xs:element name="Tree" type="xs:string" minOccurs="0" maxOccurs="unbounded"/>
  14                         <xs:element ref="vamsas:SequenceSet" minOccurs="0" maxOccurs="unbounded"/>
  15                 </xs:sequence>
  16         </xs:complexType>
  17         <xs:element name="Provenance">
  18                 <xs:complexType>
  19                         <xs:sequence maxOccurs="unbounded">
  20                                 <xs:element name="entry">
  21                                         <xs:complexType>
  22                                                 <xs:sequence>
  23                                                         <xs:element name="User" type="xs:string"/>
  24                                                         <xs:element name="Action" type="xs:string"/>
  25                                                         <xs:element name="Date" type="xs:date"/>
  26                                                 </xs:sequence>
  27                                         </xs:complexType>
  28                                 </xs:element>
  29                         </xs:sequence>
  30                 </xs:complexType>
  31         </xs:element>
  32         <xs:element name="SequenceSet">
  33                 <xs:complexType>
  34                         <xs:sequence>
  35                                 <xs:element name="Sequence" maxOccurs="unbounded">
  36                                         <xs:complexType>
  37                                                 <xs:complexContent>
  38                                                         <xs:extension base="vamsas:SequenceType">
  39                                                                 <xs:attribute name="dictionary" type="xs:string"/>
  40                                                                 <xs:attribute name="id" type="xs:ID" use="required"/>
  41                                                         </xs:extension>
  42                                                 </xs:complexContent>
  43                                         </xs:complexType>
  44                                 </xs:element>
  45                                 <xs:element name="SequenceSetAnnotations" minOccurs="0" maxOccurs="unbounded">
  46                                         <xs:complexType>
  47                                                 <xs:sequence>
  48                                                         <xs:element name="description" type="xs:string" minOccurs="0"/>
  49                                                         <xs:element name="status" type="xs:string" minOccurs="0"/>
  50                                                         <xs:element ref="vamsas:annotationElement" minOccurs="0" maxOccurs="unbounded"/>
  51                                                         <xs:element ref="vamsas:Provenance"/>
  52                                                 </xs:sequence>
  53                                                 <xs:attribute name="type" type="xs:string" use="required"/>
  54                                                 <xs:attribute name="end" type="xs:string" use="required"/>
  55                                                 <xs:attribute name="begin" type="xs:string" use="required"/>
  56                                                 <xs:attribute name="seqRef" type="xs:IDREF" use="required"/>
  57                                         </xs:complexType>
  58                                 </xs:element>
  59                                 <xs:element name="Alignment" minOccurs="0" maxOccurs="unbounded">
  60                                         <xs:complexType>
  61                                                 <xs:sequence>
  62                                                         <xs:element name="AlignmentAnnotations" minOccurs="0">
  63                                                                 <xs:complexType>
  64                                                                         <xs:sequence>
  65                                                                                 <xs:element ref="vamsas:annotationElement" maxOccurs="unbounded"/>
  66                                                                                 <xs:element name="label" type="xs:string"/>
  67                                                                                 <xs:element name="description" type="xs:string"/>
  68                                                                                 <xs:element ref="vamsas:Provenance"/>
  69                                                                         </xs:sequence>
  70                                                                         <xs:attribute name="graph" type="xs:boolean" use="required"/>
  71                                                                 </xs:complexType>
  72                                                         </xs:element>
  73                                                         <xs:element name="tree" minOccurs="0" maxOccurs="unbounded">
  74                                                                 <xs:complexType>
  75                                                                         <xs:sequence>
  76                                                                                 <xs:element ref="vamsas:Provenance"/>
  77                                                                                 <xs:element name="newickFormat" type="xs:string"/>
  78                                                                         </xs:sequence>
  79                                                                 </xs:complexType>
  80                                                         </xs:element>
  81                                                         <xs:element name="alignmentSequence" minOccurs="2" maxOccurs="unbounded">
  82                                                                 <xs:complexType>
  83                                                                         <xs:complexContent>
  84                                                                                 <xs:extension base="vamsas:SequenceType">
  85                                                                                         <xs:attribute name="id" type="xs:IDREF" use="required"/>
  86                                                                                 </xs:extension>
  87                                                                         </xs:complexContent>
  88                                                                 </xs:complexType>
  89                                                         </xs:element>
  90                                                         <xs:element ref="vamsas:Provenance"/>
  91                                                 </xs:sequence>
  92                                         </xs:complexType>
  93                                 </xs:element>
  94                                 <xs:element name="tree">
  95                                         <xs:complexType>
  96                                                 <xs:sequence>
  97                                                         <xs:element ref="vamsas:Provenance"/>
  98                                                         <xs:element name="newickFormat" type="xs:string"/>
  99                                                 </xs:sequence>
 100                                         </xs:complexType>
 101                                 </xs:element>
 102                                 <xs:element ref="vamsas:Provenance"/>
 103                         </xs:sequence>
 104                         <xs:attribute name="gapChar" type="xs:string" use="required"/>
 105                         <xs:attribute name="aligned" type="xs:boolean" use="optional"/>
 106                 </xs:complexType>
 107         </xs:element>
 108         <xs:element name="annotationElement">
 109                 <xs:complexType>
 110                         <xs:sequence>
 111                                 <xs:element name="displayCharacter" type="xs:string"/>
 112                                 <xs:element name="description" type="xs:string"/>
 113                                 <xs:element name="secondaryStructure">
 114                                         <xs:simpleType>
 115                                                 <xs:restriction base="xs:string">
 116                                                         <xs:length value="1"/>
 117                                                 </xs:restriction>
 118                                         </xs:simpleType>
 119                                 </xs:element>
 120                                 <xs:element name="value" type="xs:float"/>
 121                         </xs:sequence>
 122                         <xs:attribute name="position" type="xs:int" use="required"/>
 123                 </xs:complexType>
 124         </xs:element>
 125         <xs:complexType name="SequenceType">
 126                 <xs:sequence>
 127                         <xs:element name="sequence" type="xs:string"/>
 128                         <xs:element name="name" type="xs:string"/>
 129                         <xs:element name="dbRef" minOccurs="0" maxOccurs="unbounded">
 130                                 <xs:complexType>
 131                                         <xs:attribute name="source"/>
 132                                         <xs:attribute name="version"/>
 133                                         <xs:attribute name="accessionId"/>
 134                                 </xs:complexType>
 135                         </xs:element>
 136                 </xs:sequence>
 137                 <xs:attribute name="start" type="xs:int" use="required"/>
 138                 <xs:attribute name="end" type="xs:int" use="required"/>
 139         </xs:complexType>
 140         <xs:complexType name="ApplicationData">
 141                 <xs:sequence>
 142                         <xs:element name="Application">
 143                                 <xs:complexType>
 144                                         <xs:attribute name="version"/>
 145                                         <xs:attribute name="name"/>
 146                                 </xs:complexType>
 147                         </xs:element>
 148                 </xs:sequence>
 149         </xs:complexType>
 150 </xs:schema>