schemas/vamsas15_9.xsd

   1 <?xml version="1.0" encoding="UTF-8"?>
   2 <!-- edited with XMLSPY v5 rel. 4 U (http://www.xmlspy.com) by MSD (EMBL OUTSTATION THE EBI WELLCOME TRUST GENOME CAMPUS) -->
   3 <!-- edited with XMLSpy v2005 rel. 3 U (http://www.altova.com) by lj (jl) -->
   4 <xs:schema xmlns:xs="http://www.w3.org/2001/XMLSchema" xmlns:vamsas="http://www.vamsas.org" targetNamespace="http://www.vamsas.org" elementFormDefault="qualified" attributeFormDefault="unqualified">
   5         <xs:element name="Version" type="xs:string"/>
   6         <xs:complexType name="LockFile">
   7                 <xs:simpleContent>
   8                         <xs:extension base="xs:string"/>
   9                 </xs:simpleContent>
  10         </xs:complexType>
  11         <xs:complexType name="VAMSAS">
  12                 <xs:sequence>
  13                         <xs:element ref="vamsas:Tree" minOccurs="0" maxOccurs="unbounded"/>
  14                         <xs:element ref="vamsas:SequenceSet" minOccurs="0" maxOccurs="unbounded"/>
  15                 </xs:sequence>
  16                 <xs:attribute name="id" type="xs:ID"/>
  17     </xs:complexType>
  18     <xs:element name="Tree">
  19                 <xs:complexType>
  20                 <xs:sequence>
  21                         <xs:element name="newickFormat" type="xs:string" minOccurs="1" maxOccurs="unbounded"/>
  22                         <xs:element ref="vamsas:Provenance" minOccurs="1" maxOccurs="1"/>
  23                     </xs:sequence>
  24                 <xs:attribute name="id" type="xs:ID"/>
  25         </xs:complexType>
  26         </xs:element>
  27         <xs:element name="Provenance">
  28                 <xs:complexType>
  29                         <xs:sequence maxOccurs="unbounded">
  30                                 <xs:element name="entry">
  31                                         <xs:complexType>
  32                                                 <xs:sequence>
  33                                                         <xs:element name="User" type="xs:string"/>
  34                                                         <xs:element name="Action" type="xs:string"/>
  35                                                         <xs:element name="Date" type="xs:date"/>
  36                                                 </xs:sequence>
  37                                         <xs:attribute name="id" type="xs:ID"/>
  38                                         </xs:complexType>
  39                                 </xs:element>
  40                         </xs:sequence>
  41                 </xs:complexType>
  42         </xs:element>
  43         <xs:element name="SequenceSet">
  44                 <xs:complexType>
  45                         <xs:sequence>
  46                                 <xs:element name="Sequence" maxOccurs="unbounded">
  47                                         <xs:complexType>
  48                                                 <xs:complexContent>
  49                                                         <xs:extension base="vamsas:SequenceType">
  50                                                                 <xs:attribute name="dictionary" type="xs:string"/>
  51                                                         </xs:extension>
  52                                                 </xs:complexContent>
  53                                         </xs:complexType>
  54                                 </xs:element>
  55                                 <xs:element name="SequenceSetAnnotations" minOccurs="0" maxOccurs="unbounded">
  56                                         <xs:complexType>
  57                                                 <xs:sequence>
  58                                                         <xs:element name="description" type="xs:string" minOccurs="0"/>
  59                                                         <xs:element name="status" type="xs:string" minOccurs="0"/>
  60                                                         <xs:element ref="vamsas:annotationElement" minOccurs="0" maxOccurs="unbounded"/>
  61                                                         <xs:element ref="vamsas:Provenance"/>
  62                                                 </xs:sequence>
  63                                                 <xs:attribute name="type" type="xs:string" use="required"/>
  64                                                 <xs:attribute name="end" type="xs:string" use="required"/>
  65                                                 <xs:attribute name="begin" type="xs:string" use="required"/>
  66                                                 <xs:attribute name="seqRef" type="xs:IDREF" use="required"/>
  67                                                 <xs:attribute name="id" type="xs:ID"/>
  68                                         </xs:complexType>
  69                                 </xs:element>
  70                                 <xs:element name="Alignment" minOccurs="0" maxOccurs="unbounded">
  71                                         <xs:complexType>
  72                                                 <xs:sequence>
  73                                                         <xs:element name="AlignmentAnnotations" minOccurs="0">
  74                                                                 <xs:complexType>
  75                                                                         <xs:sequence>
  76                                                                                 <xs:element ref="vamsas:annotationElement" maxOccurs="unbounded"/>
  77                                                                                 <xs:element name="label" type="xs:string"/>
  78                                                                                 <xs:element name="description" type="xs:string"/>
  79                                                                                 <xs:element ref="vamsas:Provenance"/>
  80                                                                         </xs:sequence>
  81                                                                         <xs:attribute name="graph" type="xs:boolean" use="required"/>
  82                                                                         <xs:attribute name="id" type="xs:ID"/>
  83                                                                 </xs:complexType>
  84                                                         </xs:element>
  85                                                         <xs:element ref="vamsas:Tree" minOccurs="0" maxOccurs="unbounded"/>
  86                                                         <xs:element name="alignmentSequence" minOccurs="2" maxOccurs="unbounded">
  87                                                                 <xs:complexType>
  88                                                                         <xs:complexContent>
  89                                                                                 <xs:extension base="vamsas:SequenceType">
  90                                                                                         <xs:attribute name="refid" type="xs:IDREF" use="required"/>
  91                                                                                 </xs:extension>
  92                                                                         </xs:complexContent>
  93                                                                 </xs:complexType>
  94                                                         </xs:element>
  95                                                         <xs:element ref="vamsas:Provenance"/>
  96                                                 </xs:sequence>
  97                                         </xs:complexType>
  98                                 </xs:element>
  99                                 <xs:element ref="vamsas:Tree" minOccurs="0" maxOccurs="unbounded"/>
 100                                 <xs:element ref="vamsas:Provenance"/>
 101                         </xs:sequence>
 102                         <xs:attribute name="gapChar" type="xs:string" use="required"/>
 103                         <xs:attribute name="aligned" type="xs:boolean" use="optional"/>
 104                         <xs:attribute name="id" type="xs:ID"/>
 105                 </xs:complexType>
 106         </xs:element>
 107         <xs:element name="annotationElement">
 108                 <xs:complexType>
 109                         <xs:sequence>
 110                                 <xs:element name="displayCharacter" type="xs:string"/>
 111                                 <xs:element name="description" type="xs:string"/>
 112                                 <xs:element name="secondaryStructure">
 113                                         <xs:simpleType>
 114                                                 <xs:restriction base="xs:string">
 115                                                         <xs:length value="1"/>
 116                                                 </xs:restriction>
 117                                         </xs:simpleType>
 118                                 </xs:element>
 119                                 <xs:element name="value" type="xs:float"/>
 120                         </xs:sequence>
 121                         <xs:attribute name="position" type="xs:int" use="required"/>
 122                         <xs:attribute name="id" type="xs:ID"/>
 123                 </xs:complexType>
 124         </xs:element>
 125     <xs:complexType name="SequenceType">
 126                 <xs:sequence>
 127                         <xs:element name="sequence" type="xs:string"/>
 128                         <xs:element name="name" type="xs:string"/>
 129                         <xs:element name="dbRef" minOccurs="0" maxOccurs="unbounded">
 130                                 <xs:complexType>
 131                                         <xs:attribute name="source"/>
 132                                         <xs:attribute name="version"/>
 133                                         <xs:attribute name="accessionId"/>
 134                                         <xs:attribute name="id" type="xs:ID"/>
 135                                 </xs:complexType>
 136                         </xs:element>
 137                 </xs:sequence>
 138                 <xs:attribute name="start" type="xs:int" use="required"/>
 139                 <xs:attribute name="end" type="xs:int" use="required"/>
 140                 <xs:attribute name="id" type="xs:ID"/>
 141         </xs:complexType>
 142
 143     <xs:complexType name="ApplicationData">
 144                 <xs:sequence>
 145                         <xs:element name="Application">
 146                                 <xs:complexType>
 147                                         <xs:attribute name="version" type="xs:string"/>
 148                                         <xs:attribute name="name" type="xs:string"/>
 149                                         <xs:attribute name="session" type="xs:string"/>
 150                                         <xs:attribute name="data" type="xs:string"/>
 151                                 </xs:complexType>
 152                         </xs:element>
 153                 </xs:sequence>
 154         </xs:complexType>
 155 </xs:schema>