src/jalview/jbgui/GPreferences.java

   1 /*\r
   2 * Jalview - A Sequence Alignment Editor and Viewer\r
   3 * Copyright (C) 2005 AM Waterhouse, J Procter, G Barton, M Clamp, S Searle\r
   4 *\r
   5 * This program is free software; you can redistribute it and/or\r
   6 * modify it under the terms of the GNU General Public License\r
   7 * as published by the Free Software Foundation; either version 2\r
   8 * of the License, or (at your option) any later version.\r
   9 *\r
  10 * This program is distributed in the hope that it will be useful,\r
  11 * but WITHOUT ANY WARRANTY; without even the implied warranty of\r
  12 * MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE.  See the\r
  13 * GNU General Public License for more details.\r
  14 *\r
  15 * You should have received a copy of the GNU General Public License\r
  16 * along with this program; if not, write to the Free Software\r
  17 * Foundation, Inc., 51 Franklin Street, Fifth Floor, Boston, MA  02110-1301, USA\r
  18 */\r
  19 package jalview.jbgui;\r
  20 \r
  21 import java.awt.*;\r
  22 \r
  23 import javax.swing.*;\r
  24 import javax.swing.border.TitledBorder;\r
  25 import java.awt.event.*;\r
  26 import javax.swing.event.*;\r
  27 \r
  28 \r
  29 /**\r
  30  * DOCUMENT ME!\r
  31  *\r
  32  * @author $author$\r
  33  * @version $Revision$\r
  34  */\r
  35 public class GPreferences extends JPanel\r
  36 {\r
  37     JTabbedPane tabbedPane = new JTabbedPane();\r
  38 \r
  39     JButton ok = new JButton();\r
  40     JButton cancel = new JButton();\r
  41     JPanel okCancelPanel = new JPanel();\r
  42     BorderLayout borderLayout1 = new BorderLayout();\r
  43     protected JCheckBox quality = new JCheckBox();\r
  44     JPanel visualTab = new JPanel();\r
  45   protected JCheckBox fullScreen = new JCheckBox();\r
  46     protected JCheckBox conservation = new JCheckBox();\r
  47     protected JCheckBox identity = new JCheckBox();\r
  48     protected JCheckBox annotations = new JCheckBox();\r
  49     JLabel gapLabel = new JLabel();\r
  50     protected JComboBox colour = new JComboBox();\r
  51     JLabel colourLabel = new JLabel();\r
  52     JLabel fontLabel = new JLabel();\r
  53     protected JComboBox fontSizeCB = new JComboBox();\r
  54     protected JComboBox fontStyleCB = new JComboBox();\r
  55     protected JComboBox fontNameCB = new JComboBox();\r
  56     protected JComboBox gapSymbolCB = new JComboBox();\r
  57     protected JCheckBox startupCheckbox = new JCheckBox();\r
  58     protected JTextField startupFileTextfield = new JTextField();\r
  59   JPanel connectTab = new JPanel();\r
  60   JLabel serverLabel = new JLabel();\r
  61   protected JList linkURLList = new JList();\r
  62   protected JTextField proxyServerTB = new JTextField();\r
  63   protected JTextField proxyPortTB = new JTextField();\r
  64   JLabel portLabel = new JLabel();\r
  65   JLabel browserLabel = new JLabel();\r
  66   protected JTextField defaultBrowser = new JTextField();\r
  67   JButton newLink = new JButton();\r
  68   JButton editLink = new JButton();\r
  69   JButton deleteLink = new JButton();\r
  70   JScrollPane linkScrollPane = new JScrollPane();\r
  71   JPanel linkPanel = new JPanel();\r
  72   BorderLayout borderLayout2 = new BorderLayout();\r
  73   JPanel editLinkButtons = new JPanel();\r
  74   GridLayout gridLayout1 = new GridLayout();\r
  75   protected JList linkNameList = new JList();\r
  76   JPanel linkPanel2 = new JPanel();\r
  77   BorderLayout borderLayout3 = new BorderLayout();\r
  78   protected JCheckBox useProxy = new JCheckBox();\r
  79   JPanel jPanel1 = new JPanel();\r
  80   TitledBorder titledBorder1 = new TitledBorder("Proxy Server");\r
  81   TitledBorder titledBorder2 = new TitledBorder("File Output");\r
  82   GridBagLayout gridBagLayout2 = new GridBagLayout();\r
  83   GridBagLayout gridBagLayout1 = new GridBagLayout();\r
  84   GridBagLayout gridBagLayout3 = new GridBagLayout();\r
  85   protected JComboBox sortby = new JComboBox();\r
  86   JLabel sortLabel = new JLabel();\r
  87   JPanel jPanel2 = new JPanel();\r
  88   GridLayout gridLayout2 = new GridLayout();\r
  89   JPanel jPanel3 = new JPanel();\r
  90   JPanel exportTab = new JPanel();\r
  91   JLabel epsLabel = new JLabel();\r
  92   protected JComboBox epsRendering = new JComboBox();\r
  93   JLabel jLabel1 = new JLabel();\r
  94   protected  JCheckBox blcjv = new JCheckBox();\r
  95   protected  JCheckBox pileupjv = new JCheckBox();\r
  96   protected  JCheckBox clustaljv = new JCheckBox();\r
  97   protected  JCheckBox msfjv = new JCheckBox();\r
  98   protected  JCheckBox fastajv = new JCheckBox();\r
  99   protected  JCheckBox pfamjv = new JCheckBox();\r
 100   FlowLayout flowLayout1 = new FlowLayout();\r
 101   protected  JCheckBox pirjv = new JCheckBox();\r
 102   JPanel jPanel11 = new JPanel();\r
 103   Font verdana11 = new java.awt.Font("Verdana", Font.PLAIN, 11);\r
 104   protected JCheckBox seqLimit = new JCheckBox();\r
 105   GridLayout gridLayout3 = new GridLayout();\r
 106   protected JCheckBox smoothFont = new JCheckBox();\r
 107   JPanel calcTab = new JPanel();\r
 108   protected JCheckBox autoCalculateConsCheck = new JCheckBox();\r
 109   protected JCheckBox padGaps = new JCheckBox();\r
 110   protected JCheckBox modellerOutput = new JCheckBox();\r
 111   protected JPanel dasPanel = new JPanel();\r
 112   BorderLayout borderLayout4 = new BorderLayout();\r
 113   /**\r
 114      * Creates a new GPreferences object.\r
 115      */\r
 116     public GPreferences()\r
 117     {\r
 118         try\r
 119         {\r
 120             jbInit();\r
 121         }\r
 122         catch (Exception ex)\r
 123         {\r
 124             ex.printStackTrace();\r
 125         }\r
 126     }\r
 127 \r
 128     /**\r
 129      * DOCUMENT ME!\r
 130      *\r
 131      * @throws Exception DOCUMENT ME!\r
 132      */\r
 133     private void jbInit() throws Exception\r
 134     {\r
 135         this.setLayout(borderLayout1);\r
 136         ok.setText("OK");\r
 137         ok.addActionListener(new ActionListener()\r
 138             {\r
 139                 public void actionPerformed(ActionEvent e)\r
 140                 {\r
 141                     ok_actionPerformed(e);\r
 142                 }\r
 143             });\r
 144         cancel.setText("Cancel");\r
 145         cancel.addActionListener(new ActionListener()\r
 146             {\r
 147                 public void actionPerformed(ActionEvent e)\r
 148                 {\r
 149                     cancel_actionPerformed(e);\r
 150                 }\r
 151             });\r
 152         quality.setEnabled(false);\r
 153         quality.setFont(verdana11);\r
 154         quality.setHorizontalAlignment(SwingConstants.RIGHT);\r
 155         quality.setHorizontalTextPosition(SwingConstants.LEFT);\r
 156         quality.setSelected(true);\r
 157         quality.setText("Quality");\r
 158     visualTab.setBorder(new TitledBorder("Open new alignment"));\r
 159     visualTab.setLayout(null);\r
 160     fullScreen.setFont(verdana11);\r
 161         fullScreen.setHorizontalAlignment(SwingConstants.RIGHT);\r
 162         fullScreen.setHorizontalTextPosition(SwingConstants.LEFT);\r
 163     fullScreen.setMargin(new Insets(2, 2, 2, 0));\r
 164     fullScreen.setText("Maximise Window");\r
 165     conservation.setEnabled(false);\r
 166         conservation.setFont(verdana11);\r
 167         conservation.setHorizontalAlignment(SwingConstants.RIGHT);\r
 168         conservation.setHorizontalTextPosition(SwingConstants.LEFT);\r
 169         conservation.setSelected(true);\r
 170         conservation.setText("Conservation");\r
 171     identity.setEnabled(false);\r
 172         identity.setFont(verdana11);\r
 173         identity.setHorizontalAlignment(SwingConstants.RIGHT);\r
 174         identity.setHorizontalTextPosition(SwingConstants.LEFT);\r
 175         identity.setSelected(true);\r
 176         identity.setText("Consensus");\r
 177     annotations.setFont(verdana11);\r
 178         annotations.setHorizontalAlignment(SwingConstants.RIGHT);\r
 179         annotations.setHorizontalTextPosition(SwingConstants.LEFT);\r
 180     annotations.setMargin(new Insets(2, 4, 2, 0));\r
 181     annotations.setSelected(true);\r
 182         annotations.setText("Show Annotations");\r
 183     annotations.addActionListener(new ActionListener()\r
 184             {\r
 185                 public void actionPerformed(ActionEvent e)\r
 186                 {\r
 187                     annotations_actionPerformed(e);\r
 188                 }\r
 189             });\r
 190         gapLabel.setFont(verdana11);\r
 191         gapLabel.setHorizontalAlignment(SwingConstants.RIGHT);\r
 192         gapLabel.setText("Gap Symbol ");\r
 193     colour.setFont(verdana11);\r
 194         colour.setBounds(new Rectangle(171, 180, 155, 21));\r
 195         colourLabel.setFont(verdana11);\r
 196         colourLabel.setHorizontalAlignment(SwingConstants.RIGHT);\r
 197         colourLabel.setText("Colour ");\r
 198     fontLabel.setFont(verdana11);\r
 199         fontLabel.setHorizontalAlignment(SwingConstants.RIGHT);\r
 200         fontLabel.setText("Font ");\r
 201     fontSizeCB.setFont(verdana11);\r
 202         fontSizeCB.setBounds(new Rectangle(318, 100, 49, 21));\r
 203         fontStyleCB.setFont(verdana11);\r
 204         fontStyleCB.setBounds(new Rectangle(366, 100, 70, 21));\r
 205         fontNameCB.setFont(verdana11);\r
 206         fontNameCB.setBounds(new Rectangle(171, 100, 147, 21));\r
 207         gapSymbolCB.setFont(verdana11);\r
 208         gapSymbolCB.setBounds(new Rectangle(171, 153, 69, 21));\r
 209         startupCheckbox.setText("Open file");\r
 210     startupCheckbox.setFont(verdana11);\r
 211         startupCheckbox.setHorizontalAlignment(SwingConstants.RIGHT);\r
 212         startupCheckbox.setHorizontalTextPosition(SwingConstants.LEFT);\r
 213         startupCheckbox.setSelected(true);\r
 214         startupFileTextfield.setFont(verdana11);\r
 215         startupFileTextfield.setBounds(new Rectangle(171, 236, 270, 20));\r
 216         startupFileTextfield.addMouseListener(new MouseAdapter()\r
 217             {\r
 218                 public void mouseClicked(MouseEvent e)\r
 219                 {\r
 220                     if (e.getClickCount() > 1)\r
 221                     {\r
 222                         startupFileTextfield_mouseClicked();\r
 223                     }\r
 224                 }\r
 225             });\r
 226 \r
 227      connectTab.setLayout(gridBagLayout3);\r
 228     serverLabel.setText("Address");\r
 229     serverLabel.setHorizontalAlignment(SwingConstants.RIGHT);\r
 230     serverLabel.setFont(verdana11);\r
 231     proxyServerTB.setFont(verdana11);\r
 232     proxyPortTB.setFont(verdana11);\r
 233     portLabel.setFont(verdana11);\r
 234     portLabel.setHorizontalAlignment(SwingConstants.RIGHT);\r
 235     portLabel.setText("Port");\r
 236     browserLabel.setFont(new java.awt.Font("SansSerif", 0, 11));\r
 237     browserLabel.setHorizontalAlignment(SwingConstants.TRAILING);\r
 238     browserLabel.setText("Default Browser (Unix)");\r
 239     defaultBrowser.setFont(verdana11);\r
 240     defaultBrowser.setText("");\r
 241     newLink.setText("New");\r
 242     newLink.addActionListener(new java.awt.event.ActionListener() {\r
 243       public void actionPerformed(ActionEvent e) {\r
 244         newLink_actionPerformed(e);\r
 245       }\r
 246     });\r
 247     editLink.setText("Edit");\r
 248     editLink.addActionListener(new java.awt.event.ActionListener() {\r
 249       public void actionPerformed(ActionEvent e) {\r
 250         editLink_actionPerformed(e);\r
 251       }\r
 252     });\r
 253     deleteLink.setText("Delete");\r
 254     deleteLink.addActionListener(new java.awt.event.ActionListener() {\r
 255       public void actionPerformed(ActionEvent e) {\r
 256         deleteLink_actionPerformed(e);\r
 257       }\r
 258     });\r
 259 \r
 260     linkURLList.addListSelectionListener(new ListSelectionListener()\r
 261          {\r
 262             public void valueChanged(ListSelectionEvent e)\r
 263             {\r
 264                int index = linkURLList.getSelectedIndex();\r
 265                linkNameList.setSelectedIndex(index);\r
 266             }\r
 267          });\r
 268 \r
 269     linkNameList.addListSelectionListener(new ListSelectionListener()\r
 270         {\r
 271           public void valueChanged(ListSelectionEvent e)\r
 272           {\r
 273               int index = linkNameList.getSelectedIndex();\r
 274               linkURLList.setSelectedIndex(index);\r
 275           }\r
 276         });\r
 277 \r
 278     linkScrollPane.setBorder(null);\r
 279     linkPanel.setBorder(new TitledBorder("URL link from Sequence ID"));\r
 280     linkPanel.setLayout(borderLayout2);\r
 281     editLinkButtons.setLayout(gridLayout1);\r
 282     gridLayout1.setRows(3);\r
 283     linkNameList.setFont(verdana11);\r
 284     linkNameList.setSelectionMode(ListSelectionModel.SINGLE_SELECTION);\r
 285     linkPanel2.setLayout(borderLayout3);\r
 286     linkURLList.setFont(verdana11);\r
 287     linkURLList.setSelectionMode(ListSelectionModel.SINGLE_SELECTION);\r
 288 \r
 289     defaultBrowser.addMouseListener(new MouseAdapter()\r
 290     {\r
 291       public void mouseClicked(MouseEvent e)\r
 292       {\r
 293         if (e.getClickCount() > 1)\r
 294             {\r
 295               defaultBrowser_mouseClicked(e);\r
 296             }\r
 297       }\r
 298     });\r
 299     useProxy.setFont(verdana11);\r
 300     useProxy.setHorizontalAlignment(SwingConstants.RIGHT);\r
 301     useProxy.setHorizontalTextPosition(SwingConstants.LEADING);\r
 302     useProxy.setText("Use a proxy server");\r
 303     useProxy.addActionListener(new ActionListener()\r
 304     {\r
 305       public void actionPerformed(ActionEvent e)\r
 306       {\r
 307         useProxy_actionPerformed();\r
 308       }\r
 309     });\r
 310     jPanel1.setBorder(titledBorder1);\r
 311     jPanel1.setLayout(gridBagLayout1);\r
 312     sortby.setFont(verdana11);\r
 313     sortby.setBounds(new Rectangle(171, 208, 155, 21));\r
 314     sortLabel.setFont(verdana11);\r
 315     sortLabel.setHorizontalAlignment(SwingConstants.RIGHT);\r
 316     sortLabel.setText("Sort by ");\r
 317     jPanel2.setBounds(new Rectangle(7, 17, 158, 245));\r
 318     jPanel2.setLayout(gridLayout2);\r
 319     gridLayout2.setRows(9);\r
 320     jPanel3.setBounds(new Rectangle(167, 41, 274, 26));\r
 321     exportTab.setLayout(null);\r
 322     epsLabel.setFont(verdana11);\r
 323     epsLabel.setHorizontalAlignment(SwingConstants.RIGHT);\r
 324     epsLabel.setText("EPS Rendering Style");\r
 325     epsLabel.setBounds(new Rectangle(9, 31, 140, 24));\r
 326     epsRendering.setFont(verdana11);\r
 327     epsRendering.setBounds(new Rectangle(154, 34, 187, 21));\r
 328     jLabel1.setFont(verdana11);\r
 329     jLabel1.setHorizontalAlignment(SwingConstants.CENTER);\r
 330     jLabel1.setText("Append /start-end (/15-380)");\r
 331     jLabel1.setFont(verdana11);\r
 332     fastajv.setFont(verdana11);\r
 333     fastajv.setHorizontalAlignment(SwingConstants.LEFT);\r
 334     clustaljv.setText("Clustal     ");\r
 335     blcjv.setText("BLC     ");\r
 336     fastajv.setText("Fasta     ");\r
 337     msfjv.setText("MSF     ");\r
 338     pfamjv.setText("PFAM     ");\r
 339     pileupjv.setText("Pileup     ");\r
 340     msfjv.setFont(verdana11);\r
 341     msfjv.setHorizontalAlignment(SwingConstants.LEFT);\r
 342     pirjv.setText("PIR     ");\r
 343     jPanel11.setFont(verdana11);\r
 344     jPanel11.setBorder(titledBorder2);\r
 345     jPanel11.setBounds(new Rectangle(30, 72, 196, 182));\r
 346     jPanel11.setLayout(gridLayout3);\r
 347     blcjv.setFont(verdana11);\r
 348     blcjv.setHorizontalAlignment(SwingConstants.LEFT);\r
 349     clustaljv.setFont(verdana11);\r
 350     clustaljv.setHorizontalAlignment(SwingConstants.LEFT);\r
 351     pfamjv.setFont(verdana11);\r
 352     pfamjv.setHorizontalAlignment(SwingConstants.LEFT);\r
 353     pileupjv.setFont(verdana11);\r
 354     pileupjv.setHorizontalAlignment(SwingConstants.LEFT);\r
 355     pirjv.setFont(verdana11);\r
 356     pirjv.setHorizontalAlignment(SwingConstants.LEFT);\r
 357     seqLimit.setFont(verdana11);\r
 358     seqLimit.setHorizontalAlignment(SwingConstants.RIGHT);\r
 359     seqLimit.setHorizontalTextPosition(SwingConstants.LEFT);\r
 360     seqLimit.setText("Full Sequence Id");\r
 361     gridLayout3.setRows(8);\r
 362     smoothFont.setFont(verdana11);\r
 363     smoothFont.setHorizontalAlignment(SwingConstants.RIGHT);\r
 364     smoothFont.setHorizontalTextPosition(SwingConstants.LEADING);\r
 365     smoothFont.setText("Smooth Font");\r
 366     calcTab.setLayout(null);\r
 367     autoCalculateConsCheck.setFont(new java.awt.Font("Verdana", Font.PLAIN, 11));\r
 368     autoCalculateConsCheck.setText("AutoCalculate Consensus");\r
 369     autoCalculateConsCheck.setBounds(new Rectangle(21, 52, 209, 23));\r
 370     padGaps.setFont(new java.awt.Font("Verdana", Font.PLAIN, 11));\r
 371     padGaps.setText("Pad gaps when editing");\r
 372     padGaps.setBounds(new Rectangle(22, 94, 168, 23));\r
 373     modellerOutput.setFont(new java.awt.Font("Verdana", Font.PLAIN, 11));\r
 374     modellerOutput.setText("Use Modeller Output");\r
 375     modellerOutput.setBounds(new Rectangle(228, 226, 168, 23));\r
 376     dasPanel.setLayout(borderLayout4);\r
 377     jPanel2.add(fullScreen);\r
 378 \r
 379     jPanel2.add(annotations);\r
 380     jPanel2.add(seqLimit);\r
 381     jPanel2.add(fontLabel);\r
 382     jPanel2.add(smoothFont);\r
 383     jPanel2.add(gapLabel);\r
 384     jPanel2.add(colourLabel);\r
 385     jPanel2.add(sortLabel);\r
 386     jPanel2.add(startupCheckbox);\r
 387     visualTab.add(colour);\r
 388     visualTab.add(gapSymbolCB);\r
 389     visualTab.add(startupFileTextfield);\r
 390     visualTab.add(sortby);\r
 391     visualTab.add(fontNameCB);\r
 392     visualTab.add(fontSizeCB);\r
 393     visualTab.add(fontStyleCB);\r
 394     visualTab.add(jPanel3);\r
 395     jPanel3.add(conservation);\r
 396     jPanel3.add(identity);\r
 397     jPanel3.add(quality);\r
 398     visualTab.add(jPanel2);\r
 399     linkPanel.add(editLinkButtons, BorderLayout.EAST);\r
 400     editLinkButtons.add(newLink, null);\r
 401     editLinkButtons.add(editLink, null);\r
 402     editLinkButtons.add(deleteLink, null);\r
 403     linkPanel.add(linkScrollPane, BorderLayout.CENTER);\r
 404     linkScrollPane.getViewport().add(linkPanel2, null);\r
 405     linkPanel2.add(linkURLList, BorderLayout.CENTER);\r
 406     linkPanel2.add(linkNameList, BorderLayout.WEST);\r
 407         okCancelPanel.add(ok);\r
 408         okCancelPanel.add(cancel);\r
 409     this.add(tabbedPane, java.awt.BorderLayout.CENTER);\r
 410 \r
 411         this.add(okCancelPanel, java.awt.BorderLayout.SOUTH);\r
 412     jPanel1.add(serverLabel, new GridBagConstraints(0, 1, 1, 1, 0.0, 0.0\r
 413         , GridBagConstraints.WEST, GridBagConstraints.NONE,\r
 414         new Insets(0, 2, 4, 0), 5, 0));\r
 415     jPanel1.add(portLabel, new GridBagConstraints(2, 1, 1, 1, 0.0, 0.0\r
 416                                                   , GridBagConstraints.WEST,\r
 417                                                   GridBagConstraints.NONE,\r
 418                                                   new Insets(0, 0, 4, 0), 11, 6));\r
 419     connectTab.add(linkPanel, new GridBagConstraints(0, 0, 2, 1, 1.0, 1.0\r
 420         , GridBagConstraints.CENTER, GridBagConstraints.BOTH,\r
 421         new Insets(16, 0, 0, 12), 359, -17));\r
 422     connectTab.add(jPanel1, new GridBagConstraints(0, 2, 2, 1, 1.0, 1.0\r
 423         , GridBagConstraints.CENTER, GridBagConstraints.BOTH,\r
 424         new Insets(21, 0, 35, 12), 4, 6));\r
 425     connectTab.add(browserLabel, new GridBagConstraints(0, 1, 1, 1, 0.0, 0.0\r
 426         , GridBagConstraints.WEST, GridBagConstraints.NONE,\r
 427         new Insets(16, 0, 0, 0), 5, 1));\r
 428     jPanel1.add(proxyPortTB, new GridBagConstraints(3, 1, 1, 1, 1.0, 0.0\r
 429         , GridBagConstraints.WEST, GridBagConstraints.HORIZONTAL,\r
 430         new Insets(0, 2, 4, 2), 54, 1));\r
 431     jPanel1.add(proxyServerTB, new GridBagConstraints(1, 1, 1, 1, 1.0, 0.0\r
 432         , GridBagConstraints.WEST, GridBagConstraints.HORIZONTAL,\r
 433         new Insets(0, 2, 4, 0), 263, 1));\r
 434     connectTab.add(defaultBrowser, new GridBagConstraints(1, 1, 1, 1, 1.0, 0.0\r
 435         , GridBagConstraints.WEST, GridBagConstraints.HORIZONTAL,\r
 436         new Insets(15, 0, 0, 15), 307, 1));\r
 437 \r
 438 \r
 439     jPanel1.add(useProxy, new GridBagConstraints(0, 0, 2, 1, 0.0, 0.0\r
 440                                                  , GridBagConstraints.WEST,\r
 441                                                  GridBagConstraints.NONE,\r
 442                                                  new Insets(0, 2, 5, 185), 2,\r
 443                                                  -4));\r
 444     DefaultListCellRenderer dlcr = new DefaultListCellRenderer();\r
 445         dlcr.setHorizontalAlignment(DefaultListCellRenderer.CENTER);\r
 446         gapSymbolCB.setRenderer(dlcr);\r
 447 \r
 448     tabbedPane.add(visualTab, "Visual");\r
 449     tabbedPane.add(connectTab,"Connections");\r
 450     tabbedPane.add(exportTab, "Output");\r
 451     jPanel11.add(jLabel1);\r
 452     jPanel11.add(blcjv);\r
 453     jPanel11.add(clustaljv);\r
 454     jPanel11.add(fastajv);\r
 455     jPanel11.add(msfjv);\r
 456     jPanel11.add(pfamjv);\r
 457     jPanel11.add(pileupjv);\r
 458     jPanel11.add(pirjv);\r
 459     exportTab.add(modellerOutput);\r
 460     tabbedPane.add(calcTab, "Editing");\r
 461     calcTab.add(autoCalculateConsCheck);\r
 462     calcTab.add(padGaps);\r
 463     tabbedPane.add(dasPanel, "DAS Settings");\r
 464 \r
 465     exportTab.add(epsLabel);\r
 466     exportTab.add(epsRendering);\r
 467     exportTab.add(jPanel11);\r
 468   }\r
 469 \r
 470     /**\r
 471      * DOCUMENT ME!\r
 472      *\r
 473      * @param e DOCUMENT ME!\r
 474      */\r
 475     public void ok_actionPerformed(ActionEvent e)\r
 476     {\r
 477     }\r
 478 \r
 479     /**\r
 480      * DOCUMENT ME!\r
 481      *\r
 482      * @param e DOCUMENT ME!\r
 483      */\r
 484     public void cancel_actionPerformed(ActionEvent e)\r
 485     {\r
 486     }\r
 487 \r
 488     /**\r
 489      * DOCUMENT ME!\r
 490      *\r
 491      * @param e DOCUMENT ME!\r
 492      */\r
 493     public void annotations_actionPerformed(ActionEvent e)\r
 494     {\r
 495     }\r
 496 \r
 497 \r
 498     /**\r
 499      * DOCUMENT ME!\r
 500      */\r
 501     public void startupFileTextfield_mouseClicked()\r
 502     {\r
 503     }\r
 504 \r
 505 \r
 506   public void newLink_actionPerformed(ActionEvent e) {\r
 507 \r
 508   }\r
 509 \r
 510   public void editLink_actionPerformed(ActionEvent e) {\r
 511 \r
 512   }\r
 513 \r
 514   public void deleteLink_actionPerformed(ActionEvent e) {\r
 515 \r
 516   }\r
 517 \r
 518   public void defaultBrowser_mouseClicked(MouseEvent e)\r
 519   {\r
 520 \r
 521   }\r
 522 \r
 523   public void linkURLList_keyTyped(KeyEvent e)\r
 524   {\r
 525 \r
 526   }\r
 527 \r
 528   public void useProxy_actionPerformed()\r
 529   {\r
 530       proxyServerTB.setEnabled(useProxy.isSelected());\r
 531       proxyPortTB.setEnabled(useProxy.isSelected());\r
 532   }\r
 533 }\r