2 * Jalview - A Sequence Alignment Editor and Viewer (Version 2.4.1)
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3 * Copyright (C) 2009 AM Waterhouse, J Procter, G Barton, M Clamp, S Searle
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5 * This program is free software; you can redistribute it and/or
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6 * modify it under the terms of the GNU General Public License
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7 * as published by the Free Software Foundation; either version 2
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8 * of the License, or (at your option) any later version.
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10 * This program is distributed in the hope that it will be useful,
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11 * but WITHOUT ANY WARRANTY; without even the implied warranty of
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12 * MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the
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13 * GNU General Public License for more details.
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15 * You should have received a copy of the GNU General Public License
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16 * along with this program; if not, write to the Free Software
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17 * Foundation, Inc., 51 Franklin Street, Fifth Floor, Boston, MA 02110-1301, USA
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19 package jalview.schemabinding.version2.descriptors;
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21 //---------------------------------/
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22 //- Imported classes and packages -/
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23 //---------------------------------/
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25 import jalview.schemabinding.version2.JGroup;
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28 * Class JGroupDescriptor.
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30 * @version $Revision$ $Date$
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32 public class JGroupDescriptor extends org.exolab.castor.xml.util.XMLClassDescriptorImpl {
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35 //--------------------------/
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36 //- Class/Member Variables -/
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37 //--------------------------/
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40 * Field _elementDefinition.
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42 private boolean _elementDefinition;
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47 private java.lang.String _nsPrefix;
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52 private java.lang.String _nsURI;
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57 private java.lang.String _xmlName;
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64 public JGroupDescriptor() {
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66 _nsURI = "www.jalview.org";
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67 _xmlName = "JGroup";
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68 _elementDefinition = true;
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70 //-- set grouping compositor
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71 setCompositorAsSequence();
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72 org.exolab.castor.xml.util.XMLFieldDescriptorImpl desc = null;
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73 org.exolab.castor.mapping.FieldHandler handler = null;
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74 org.exolab.castor.xml.FieldValidator fieldValidator = null;
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75 //-- initialize attribute descriptors
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78 desc = new org.exolab.castor.xml.util.XMLFieldDescriptorImpl(java.lang.Integer.TYPE, "_start", "start", org.exolab.castor.xml.NodeType.Attribute);
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79 handler = new org.exolab.castor.xml.XMLFieldHandler() {
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80 public java.lang.Object getValue( java.lang.Object object )
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81 throws IllegalStateException
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83 JGroup target = (JGroup) object;
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84 if (!target.hasStart()) { return null; }
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85 return new java.lang.Integer(target.getStart());
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87 public void setValue( java.lang.Object object, java.lang.Object value)
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88 throws IllegalStateException, IllegalArgumentException
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91 JGroup target = (JGroup) object;
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92 // if null, use delete method for optional primitives
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93 if (value == null) {
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94 target.deleteStart();
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97 target.setStart( ((java.lang.Integer) value).intValue());
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98 } catch (java.lang.Exception ex) {
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99 throw new IllegalStateException(ex.toString());
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102 public java.lang.Object newInstance(java.lang.Object parent) {
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106 desc.setHandler(handler);
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107 desc.setMultivalued(false);
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108 addFieldDescriptor(desc);
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110 //-- validation code for: _start
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111 fieldValidator = new org.exolab.castor.xml.FieldValidator();
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113 org.exolab.castor.xml.validators.IntValidator typeValidator;
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114 typeValidator = new org.exolab.castor.xml.validators.IntValidator();
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115 fieldValidator.setValidator(typeValidator);
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116 typeValidator.setMinInclusive(-2147483648);
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117 typeValidator.setMaxInclusive(2147483647);
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119 desc.setValidator(fieldValidator);
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121 desc = new org.exolab.castor.xml.util.XMLFieldDescriptorImpl(java.lang.Integer.TYPE, "_end", "end", org.exolab.castor.xml.NodeType.Attribute);
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122 handler = new org.exolab.castor.xml.XMLFieldHandler() {
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123 public java.lang.Object getValue( java.lang.Object object )
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124 throws IllegalStateException
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126 JGroup target = (JGroup) object;
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127 if (!target.hasEnd()) { return null; }
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128 return new java.lang.Integer(target.getEnd());
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130 public void setValue( java.lang.Object object, java.lang.Object value)
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131 throws IllegalStateException, IllegalArgumentException
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134 JGroup target = (JGroup) object;
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135 // if null, use delete method for optional primitives
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136 if (value == null) {
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137 target.deleteEnd();
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140 target.setEnd( ((java.lang.Integer) value).intValue());
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141 } catch (java.lang.Exception ex) {
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142 throw new IllegalStateException(ex.toString());
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145 public java.lang.Object newInstance(java.lang.Object parent) {
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149 desc.setHandler(handler);
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150 desc.setMultivalued(false);
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151 addFieldDescriptor(desc);
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153 //-- validation code for: _end
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154 fieldValidator = new org.exolab.castor.xml.FieldValidator();
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156 org.exolab.castor.xml.validators.IntValidator typeValidator;
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157 typeValidator = new org.exolab.castor.xml.validators.IntValidator();
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158 fieldValidator.setValidator(typeValidator);
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159 typeValidator.setMinInclusive(-2147483648);
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160 typeValidator.setMaxInclusive(2147483647);
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162 desc.setValidator(fieldValidator);
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164 desc = new org.exolab.castor.xml.util.XMLFieldDescriptorImpl(java.lang.String.class, "_name", "name", org.exolab.castor.xml.NodeType.Attribute);
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165 desc.setImmutable(true);
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166 handler = new org.exolab.castor.xml.XMLFieldHandler() {
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167 public java.lang.Object getValue( java.lang.Object object )
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168 throws IllegalStateException
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170 JGroup target = (JGroup) object;
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171 return target.getName();
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173 public void setValue( java.lang.Object object, java.lang.Object value)
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174 throws IllegalStateException, IllegalArgumentException
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177 JGroup target = (JGroup) object;
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178 target.setName( (java.lang.String) value);
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179 } catch (java.lang.Exception ex) {
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180 throw new IllegalStateException(ex.toString());
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183 public java.lang.Object newInstance(java.lang.Object parent) {
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187 desc.setHandler(handler);
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188 desc.setMultivalued(false);
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189 addFieldDescriptor(desc);
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191 //-- validation code for: _name
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192 fieldValidator = new org.exolab.castor.xml.FieldValidator();
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194 org.exolab.castor.xml.validators.StringValidator typeValidator;
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195 typeValidator = new org.exolab.castor.xml.validators.StringValidator();
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196 fieldValidator.setValidator(typeValidator);
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197 typeValidator.setWhiteSpace("preserve");
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199 desc.setValidator(fieldValidator);
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201 desc = new org.exolab.castor.xml.util.XMLFieldDescriptorImpl(java.lang.String.class, "_colour", "colour", org.exolab.castor.xml.NodeType.Attribute);
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202 desc.setImmutable(true);
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203 handler = new org.exolab.castor.xml.XMLFieldHandler() {
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204 public java.lang.Object getValue( java.lang.Object object )
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205 throws IllegalStateException
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207 JGroup target = (JGroup) object;
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208 return target.getColour();
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210 public void setValue( java.lang.Object object, java.lang.Object value)
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211 throws IllegalStateException, IllegalArgumentException
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214 JGroup target = (JGroup) object;
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215 target.setColour( (java.lang.String) value);
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216 } catch (java.lang.Exception ex) {
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217 throw new IllegalStateException(ex.toString());
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220 public java.lang.Object newInstance(java.lang.Object parent) {
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224 desc.setHandler(handler);
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225 desc.setMultivalued(false);
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226 addFieldDescriptor(desc);
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228 //-- validation code for: _colour
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229 fieldValidator = new org.exolab.castor.xml.FieldValidator();
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231 org.exolab.castor.xml.validators.StringValidator typeValidator;
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232 typeValidator = new org.exolab.castor.xml.validators.StringValidator();
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233 fieldValidator.setValidator(typeValidator);
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234 typeValidator.setWhiteSpace("preserve");
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236 desc.setValidator(fieldValidator);
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237 //-- _consThreshold
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238 desc = new org.exolab.castor.xml.util.XMLFieldDescriptorImpl(java.lang.Integer.TYPE, "_consThreshold", "consThreshold", org.exolab.castor.xml.NodeType.Attribute);
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239 handler = new org.exolab.castor.xml.XMLFieldHandler() {
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240 public java.lang.Object getValue( java.lang.Object object )
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241 throws IllegalStateException
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243 JGroup target = (JGroup) object;
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244 if (!target.hasConsThreshold()) { return null; }
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245 return new java.lang.Integer(target.getConsThreshold());
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247 public void setValue( java.lang.Object object, java.lang.Object value)
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248 throws IllegalStateException, IllegalArgumentException
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251 JGroup target = (JGroup) object;
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252 // if null, use delete method for optional primitives
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253 if (value == null) {
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254 target.deleteConsThreshold();
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257 target.setConsThreshold( ((java.lang.Integer) value).intValue());
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258 } catch (java.lang.Exception ex) {
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259 throw new IllegalStateException(ex.toString());
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262 public java.lang.Object newInstance(java.lang.Object parent) {
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266 desc.setHandler(handler);
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267 desc.setMultivalued(false);
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268 addFieldDescriptor(desc);
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270 //-- validation code for: _consThreshold
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271 fieldValidator = new org.exolab.castor.xml.FieldValidator();
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273 org.exolab.castor.xml.validators.IntValidator typeValidator;
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274 typeValidator = new org.exolab.castor.xml.validators.IntValidator();
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275 fieldValidator.setValidator(typeValidator);
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276 typeValidator.setMinInclusive(-2147483648);
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277 typeValidator.setMaxInclusive(2147483647);
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279 desc.setValidator(fieldValidator);
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281 desc = new org.exolab.castor.xml.util.XMLFieldDescriptorImpl(java.lang.Integer.TYPE, "_pidThreshold", "pidThreshold", org.exolab.castor.xml.NodeType.Attribute);
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282 handler = new org.exolab.castor.xml.XMLFieldHandler() {
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283 public java.lang.Object getValue( java.lang.Object object )
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284 throws IllegalStateException
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286 JGroup target = (JGroup) object;
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287 if (!target.hasPidThreshold()) { return null; }
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288 return new java.lang.Integer(target.getPidThreshold());
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290 public void setValue( java.lang.Object object, java.lang.Object value)
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291 throws IllegalStateException, IllegalArgumentException
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294 JGroup target = (JGroup) object;
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295 // if null, use delete method for optional primitives
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296 if (value == null) {
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297 target.deletePidThreshold();
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300 target.setPidThreshold( ((java.lang.Integer) value).intValue());
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301 } catch (java.lang.Exception ex) {
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302 throw new IllegalStateException(ex.toString());
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305 public java.lang.Object newInstance(java.lang.Object parent) {
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309 desc.setHandler(handler);
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310 desc.setMultivalued(false);
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311 addFieldDescriptor(desc);
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313 //-- validation code for: _pidThreshold
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314 fieldValidator = new org.exolab.castor.xml.FieldValidator();
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316 org.exolab.castor.xml.validators.IntValidator typeValidator;
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317 typeValidator = new org.exolab.castor.xml.validators.IntValidator();
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318 fieldValidator.setValidator(typeValidator);
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319 typeValidator.setMinInclusive(-2147483648);
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320 typeValidator.setMaxInclusive(2147483647);
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322 desc.setValidator(fieldValidator);
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323 //-- _outlineColour
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324 desc = new org.exolab.castor.xml.util.XMLFieldDescriptorImpl(java.lang.Integer.TYPE, "_outlineColour", "outlineColour", org.exolab.castor.xml.NodeType.Attribute);
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325 handler = new org.exolab.castor.xml.XMLFieldHandler() {
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326 public java.lang.Object getValue( java.lang.Object object )
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327 throws IllegalStateException
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329 JGroup target = (JGroup) object;
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330 if (!target.hasOutlineColour()) { return null; }
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331 return new java.lang.Integer(target.getOutlineColour());
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333 public void setValue( java.lang.Object object, java.lang.Object value)
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334 throws IllegalStateException, IllegalArgumentException
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337 JGroup target = (JGroup) object;
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338 // if null, use delete method for optional primitives
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339 if (value == null) {
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340 target.deleteOutlineColour();
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343 target.setOutlineColour( ((java.lang.Integer) value).intValue());
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344 } catch (java.lang.Exception ex) {
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345 throw new IllegalStateException(ex.toString());
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348 public java.lang.Object newInstance(java.lang.Object parent) {
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352 desc.setHandler(handler);
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353 desc.setMultivalued(false);
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354 addFieldDescriptor(desc);
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356 //-- validation code for: _outlineColour
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357 fieldValidator = new org.exolab.castor.xml.FieldValidator();
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359 org.exolab.castor.xml.validators.IntValidator typeValidator;
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360 typeValidator = new org.exolab.castor.xml.validators.IntValidator();
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361 fieldValidator.setValidator(typeValidator);
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362 typeValidator.setMinInclusive(-2147483648);
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363 typeValidator.setMaxInclusive(2147483647);
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365 desc.setValidator(fieldValidator);
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367 desc = new org.exolab.castor.xml.util.XMLFieldDescriptorImpl(java.lang.Boolean.TYPE, "_displayBoxes", "displayBoxes", org.exolab.castor.xml.NodeType.Attribute);
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368 handler = new org.exolab.castor.xml.XMLFieldHandler() {
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369 public java.lang.Object getValue( java.lang.Object object )
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370 throws IllegalStateException
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372 JGroup target = (JGroup) object;
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373 if (!target.hasDisplayBoxes()) { return null; }
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374 return (target.getDisplayBoxes() ? java.lang.Boolean.TRUE : java.lang.Boolean.FALSE);
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376 public void setValue( java.lang.Object object, java.lang.Object value)
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377 throws IllegalStateException, IllegalArgumentException
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380 JGroup target = (JGroup) object;
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381 // if null, use delete method for optional primitives
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382 if (value == null) {
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383 target.deleteDisplayBoxes();
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386 target.setDisplayBoxes( ((java.lang.Boolean) value).booleanValue());
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387 } catch (java.lang.Exception ex) {
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388 throw new IllegalStateException(ex.toString());
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391 public java.lang.Object newInstance(java.lang.Object parent) {
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395 desc.setHandler(handler);
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396 desc.setMultivalued(false);
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397 addFieldDescriptor(desc);
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399 //-- validation code for: _displayBoxes
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400 fieldValidator = new org.exolab.castor.xml.FieldValidator();
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402 org.exolab.castor.xml.validators.BooleanValidator typeValidator;
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403 typeValidator = new org.exolab.castor.xml.validators.BooleanValidator();
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404 fieldValidator.setValidator(typeValidator);
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406 desc.setValidator(fieldValidator);
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408 desc = new org.exolab.castor.xml.util.XMLFieldDescriptorImpl(java.lang.Boolean.TYPE, "_displayText", "displayText", org.exolab.castor.xml.NodeType.Attribute);
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409 handler = new org.exolab.castor.xml.XMLFieldHandler() {
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410 public java.lang.Object getValue( java.lang.Object object )
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411 throws IllegalStateException
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413 JGroup target = (JGroup) object;
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414 if (!target.hasDisplayText()) { return null; }
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415 return (target.getDisplayText() ? java.lang.Boolean.TRUE : java.lang.Boolean.FALSE);
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417 public void setValue( java.lang.Object object, java.lang.Object value)
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418 throws IllegalStateException, IllegalArgumentException
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421 JGroup target = (JGroup) object;
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422 // if null, use delete method for optional primitives
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423 if (value == null) {
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424 target.deleteDisplayText();
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427 target.setDisplayText( ((java.lang.Boolean) value).booleanValue());
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428 } catch (java.lang.Exception ex) {
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429 throw new IllegalStateException(ex.toString());
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432 public java.lang.Object newInstance(java.lang.Object parent) {
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436 desc.setHandler(handler);
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437 desc.setMultivalued(false);
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438 addFieldDescriptor(desc);
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440 //-- validation code for: _displayText
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441 fieldValidator = new org.exolab.castor.xml.FieldValidator();
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443 org.exolab.castor.xml.validators.BooleanValidator typeValidator;
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444 typeValidator = new org.exolab.castor.xml.validators.BooleanValidator();
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445 fieldValidator.setValidator(typeValidator);
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447 desc.setValidator(fieldValidator);
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449 desc = new org.exolab.castor.xml.util.XMLFieldDescriptorImpl(java.lang.Boolean.TYPE, "_colourText", "colourText", org.exolab.castor.xml.NodeType.Attribute);
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450 handler = new org.exolab.castor.xml.XMLFieldHandler() {
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451 public java.lang.Object getValue( java.lang.Object object )
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452 throws IllegalStateException
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454 JGroup target = (JGroup) object;
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455 if (!target.hasColourText()) { return null; }
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456 return (target.getColourText() ? java.lang.Boolean.TRUE : java.lang.Boolean.FALSE);
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458 public void setValue( java.lang.Object object, java.lang.Object value)
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459 throws IllegalStateException, IllegalArgumentException
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462 JGroup target = (JGroup) object;
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463 // if null, use delete method for optional primitives
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464 if (value == null) {
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465 target.deleteColourText();
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468 target.setColourText( ((java.lang.Boolean) value).booleanValue());
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469 } catch (java.lang.Exception ex) {
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470 throw new IllegalStateException(ex.toString());
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473 public java.lang.Object newInstance(java.lang.Object parent) {
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477 desc.setHandler(handler);
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478 desc.setMultivalued(false);
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479 addFieldDescriptor(desc);
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481 //-- validation code for: _colourText
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482 fieldValidator = new org.exolab.castor.xml.FieldValidator();
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484 org.exolab.castor.xml.validators.BooleanValidator typeValidator;
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485 typeValidator = new org.exolab.castor.xml.validators.BooleanValidator();
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486 fieldValidator.setValidator(typeValidator);
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488 desc.setValidator(fieldValidator);
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490 desc = new org.exolab.castor.xml.util.XMLFieldDescriptorImpl(java.lang.Integer.TYPE, "_textCol1", "textCol1", org.exolab.castor.xml.NodeType.Attribute);
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491 handler = new org.exolab.castor.xml.XMLFieldHandler() {
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492 public java.lang.Object getValue( java.lang.Object object )
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493 throws IllegalStateException
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495 JGroup target = (JGroup) object;
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496 if (!target.hasTextCol1()) { return null; }
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497 return new java.lang.Integer(target.getTextCol1());
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499 public void setValue( java.lang.Object object, java.lang.Object value)
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500 throws IllegalStateException, IllegalArgumentException
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503 JGroup target = (JGroup) object;
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504 // if null, use delete method for optional primitives
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505 if (value == null) {
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506 target.deleteTextCol1();
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509 target.setTextCol1( ((java.lang.Integer) value).intValue());
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510 } catch (java.lang.Exception ex) {
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511 throw new IllegalStateException(ex.toString());
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514 public java.lang.Object newInstance(java.lang.Object parent) {
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518 desc.setHandler(handler);
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519 desc.setMultivalued(false);
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520 addFieldDescriptor(desc);
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522 //-- validation code for: _textCol1
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523 fieldValidator = new org.exolab.castor.xml.FieldValidator();
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525 org.exolab.castor.xml.validators.IntValidator typeValidator;
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526 typeValidator = new org.exolab.castor.xml.validators.IntValidator();
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527 fieldValidator.setValidator(typeValidator);
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528 typeValidator.setMinInclusive(-2147483648);
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529 typeValidator.setMaxInclusive(2147483647);
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531 desc.setValidator(fieldValidator);
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533 desc = new org.exolab.castor.xml.util.XMLFieldDescriptorImpl(java.lang.Integer.TYPE, "_textCol2", "textCol2", org.exolab.castor.xml.NodeType.Attribute);
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534 handler = new org.exolab.castor.xml.XMLFieldHandler() {
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535 public java.lang.Object getValue( java.lang.Object object )
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536 throws IllegalStateException
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538 JGroup target = (JGroup) object;
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539 if (!target.hasTextCol2()) { return null; }
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540 return new java.lang.Integer(target.getTextCol2());
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542 public void setValue( java.lang.Object object, java.lang.Object value)
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543 throws IllegalStateException, IllegalArgumentException
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546 JGroup target = (JGroup) object;
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547 // if null, use delete method for optional primitives
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548 if (value == null) {
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549 target.deleteTextCol2();
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552 target.setTextCol2( ((java.lang.Integer) value).intValue());
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553 } catch (java.lang.Exception ex) {
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554 throw new IllegalStateException(ex.toString());
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557 public java.lang.Object newInstance(java.lang.Object parent) {
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561 desc.setHandler(handler);
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562 desc.setMultivalued(false);
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563 addFieldDescriptor(desc);
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565 //-- validation code for: _textCol2
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566 fieldValidator = new org.exolab.castor.xml.FieldValidator();
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568 org.exolab.castor.xml.validators.IntValidator typeValidator;
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569 typeValidator = new org.exolab.castor.xml.validators.IntValidator();
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570 fieldValidator.setValidator(typeValidator);
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571 typeValidator.setMinInclusive(-2147483648);
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572 typeValidator.setMaxInclusive(2147483647);
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574 desc.setValidator(fieldValidator);
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575 //-- _textColThreshold
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576 desc = new org.exolab.castor.xml.util.XMLFieldDescriptorImpl(java.lang.Integer.TYPE, "_textColThreshold", "textColThreshold", org.exolab.castor.xml.NodeType.Attribute);
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577 handler = new org.exolab.castor.xml.XMLFieldHandler() {
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578 public java.lang.Object getValue( java.lang.Object object )
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579 throws IllegalStateException
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581 JGroup target = (JGroup) object;
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582 if (!target.hasTextColThreshold()) { return null; }
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583 return new java.lang.Integer(target.getTextColThreshold());
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585 public void setValue( java.lang.Object object, java.lang.Object value)
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586 throws IllegalStateException, IllegalArgumentException
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589 JGroup target = (JGroup) object;
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590 // if null, use delete method for optional primitives
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591 if (value == null) {
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592 target.deleteTextColThreshold();
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595 target.setTextColThreshold( ((java.lang.Integer) value).intValue());
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596 } catch (java.lang.Exception ex) {
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597 throw new IllegalStateException(ex.toString());
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600 public java.lang.Object newInstance(java.lang.Object parent) {
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604 desc.setHandler(handler);
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605 desc.setMultivalued(false);
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606 addFieldDescriptor(desc);
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608 //-- validation code for: _textColThreshold
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609 fieldValidator = new org.exolab.castor.xml.FieldValidator();
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611 org.exolab.castor.xml.validators.IntValidator typeValidator;
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612 typeValidator = new org.exolab.castor.xml.validators.IntValidator();
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613 fieldValidator.setValidator(typeValidator);
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614 typeValidator.setMinInclusive(-2147483648);
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615 typeValidator.setMaxInclusive(2147483647);
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617 desc.setValidator(fieldValidator);
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618 //-- _showUnconserved
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619 desc = new org.exolab.castor.xml.util.XMLFieldDescriptorImpl(java.lang.Boolean.TYPE, "_showUnconserved", "showUnconserved", org.exolab.castor.xml.NodeType.Attribute);
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620 handler = new org.exolab.castor.xml.XMLFieldHandler() {
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621 public java.lang.Object getValue( java.lang.Object object )
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622 throws IllegalStateException
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624 JGroup target = (JGroup) object;
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625 if (!target.hasShowUnconserved()) { return null; }
\r
626 return (target.getShowUnconserved() ? java.lang.Boolean.TRUE : java.lang.Boolean.FALSE);
\r
628 public void setValue( java.lang.Object object, java.lang.Object value)
\r
629 throws IllegalStateException, IllegalArgumentException
\r
632 JGroup target = (JGroup) object;
\r
633 // if null, use delete method for optional primitives
\r
634 if (value == null) {
\r
635 target.deleteShowUnconserved();
\r
638 target.setShowUnconserved( ((java.lang.Boolean) value).booleanValue());
\r
639 } catch (java.lang.Exception ex) {
\r
640 throw new IllegalStateException(ex.toString());
\r
643 public java.lang.Object newInstance(java.lang.Object parent) {
\r
647 desc.setHandler(handler);
\r
648 desc.setMultivalued(false);
\r
649 addFieldDescriptor(desc);
\r
651 //-- validation code for: _showUnconserved
\r
652 fieldValidator = new org.exolab.castor.xml.FieldValidator();
\r
654 org.exolab.castor.xml.validators.BooleanValidator typeValidator;
\r
655 typeValidator = new org.exolab.castor.xml.validators.BooleanValidator();
\r
656 fieldValidator.setValidator(typeValidator);
\r
658 desc.setValidator(fieldValidator);
\r
659 //-- _ignoreGapsinConsensus
\r
660 desc = new org.exolab.castor.xml.util.XMLFieldDescriptorImpl(java.lang.Boolean.TYPE, "_ignoreGapsinConsensus", "ignoreGapsinConsensus", org.exolab.castor.xml.NodeType.Attribute);
\r
661 handler = new org.exolab.castor.xml.XMLFieldHandler() {
\r
662 public java.lang.Object getValue( java.lang.Object object )
\r
663 throws IllegalStateException
\r
665 JGroup target = (JGroup) object;
\r
666 if (!target.hasIgnoreGapsinConsensus()) { return null; }
\r
667 return (target.getIgnoreGapsinConsensus() ? java.lang.Boolean.TRUE : java.lang.Boolean.FALSE);
\r
669 public void setValue( java.lang.Object object, java.lang.Object value)
\r
670 throws IllegalStateException, IllegalArgumentException
\r
673 JGroup target = (JGroup) object;
\r
674 // if null, use delete method for optional primitives
\r
675 if (value == null) {
\r
676 target.deleteIgnoreGapsinConsensus();
\r
679 target.setIgnoreGapsinConsensus( ((java.lang.Boolean) value).booleanValue());
\r
680 } catch (java.lang.Exception ex) {
\r
681 throw new IllegalStateException(ex.toString());
\r
684 public java.lang.Object newInstance(java.lang.Object parent) {
\r
688 desc.setHandler(handler);
\r
689 desc.setMultivalued(false);
\r
690 addFieldDescriptor(desc);
\r
692 //-- validation code for: _ignoreGapsinConsensus
\r
693 fieldValidator = new org.exolab.castor.xml.FieldValidator();
\r
695 org.exolab.castor.xml.validators.BooleanValidator typeValidator;
\r
696 typeValidator = new org.exolab.castor.xml.validators.BooleanValidator();
\r
697 fieldValidator.setValidator(typeValidator);
\r
699 desc.setValidator(fieldValidator);
\r
700 //-- _showConsensusHistogram
\r
701 desc = new org.exolab.castor.xml.util.XMLFieldDescriptorImpl(java.lang.Boolean.TYPE, "_showConsensusHistogram", "showConsensusHistogram", org.exolab.castor.xml.NodeType.Attribute);
\r
702 handler = new org.exolab.castor.xml.XMLFieldHandler() {
\r
703 public java.lang.Object getValue( java.lang.Object object )
\r
704 throws IllegalStateException
\r
706 JGroup target = (JGroup) object;
\r
707 if (!target.hasShowConsensusHistogram()) { return null; }
\r
708 return (target.getShowConsensusHistogram() ? java.lang.Boolean.TRUE : java.lang.Boolean.FALSE);
\r
710 public void setValue( java.lang.Object object, java.lang.Object value)
\r
711 throws IllegalStateException, IllegalArgumentException
\r
714 JGroup target = (JGroup) object;
\r
715 // if null, use delete method for optional primitives
\r
716 if (value == null) {
\r
717 target.deleteShowConsensusHistogram();
\r
720 target.setShowConsensusHistogram( ((java.lang.Boolean) value).booleanValue());
\r
721 } catch (java.lang.Exception ex) {
\r
722 throw new IllegalStateException(ex.toString());
\r
725 public java.lang.Object newInstance(java.lang.Object parent) {
\r
729 desc.setHandler(handler);
\r
730 desc.setMultivalued(false);
\r
731 addFieldDescriptor(desc);
\r
733 //-- validation code for: _showConsensusHistogram
\r
734 fieldValidator = new org.exolab.castor.xml.FieldValidator();
\r
736 org.exolab.castor.xml.validators.BooleanValidator typeValidator;
\r
737 typeValidator = new org.exolab.castor.xml.validators.BooleanValidator();
\r
738 fieldValidator.setValidator(typeValidator);
\r
740 desc.setValidator(fieldValidator);
\r
741 //-- _showConsensusProfile
\r
742 desc = new org.exolab.castor.xml.util.XMLFieldDescriptorImpl(java.lang.Boolean.TYPE, "_showConsensusProfile", "showConsensusProfile", org.exolab.castor.xml.NodeType.Attribute);
\r
743 handler = new org.exolab.castor.xml.XMLFieldHandler() {
\r
744 public java.lang.Object getValue( java.lang.Object object )
\r
745 throws IllegalStateException
\r
747 JGroup target = (JGroup) object;
\r
748 if (!target.hasShowConsensusProfile()) { return null; }
\r
749 return (target.getShowConsensusProfile() ? java.lang.Boolean.TRUE : java.lang.Boolean.FALSE);
\r
751 public void setValue( java.lang.Object object, java.lang.Object value)
\r
752 throws IllegalStateException, IllegalArgumentException
\r
755 JGroup target = (JGroup) object;
\r
756 // if null, use delete method for optional primitives
\r
757 if (value == null) {
\r
758 target.deleteShowConsensusProfile();
\r
761 target.setShowConsensusProfile( ((java.lang.Boolean) value).booleanValue());
\r
762 } catch (java.lang.Exception ex) {
\r
763 throw new IllegalStateException(ex.toString());
\r
766 public java.lang.Object newInstance(java.lang.Object parent) {
\r
770 desc.setHandler(handler);
\r
771 desc.setMultivalued(false);
\r
772 addFieldDescriptor(desc);
\r
774 //-- validation code for: _showConsensusProfile
\r
775 fieldValidator = new org.exolab.castor.xml.FieldValidator();
\r
777 org.exolab.castor.xml.validators.BooleanValidator typeValidator;
\r
778 typeValidator = new org.exolab.castor.xml.validators.BooleanValidator();
\r
779 fieldValidator.setValidator(typeValidator);
\r
781 desc.setValidator(fieldValidator);
\r
783 desc = new org.exolab.castor.xml.util.XMLFieldDescriptorImpl(java.lang.String.class, "_id", "id", org.exolab.castor.xml.NodeType.Attribute);
\r
784 desc.setImmutable(true);
\r
785 handler = new org.exolab.castor.xml.XMLFieldHandler() {
\r
786 public java.lang.Object getValue( java.lang.Object object )
\r
787 throws IllegalStateException
\r
789 JGroup target = (JGroup) object;
\r
790 return target.getId();
\r
792 public void setValue( java.lang.Object object, java.lang.Object value)
\r
793 throws IllegalStateException, IllegalArgumentException
\r
796 JGroup target = (JGroup) object;
\r
797 target.setId( (java.lang.String) value);
\r
798 } catch (java.lang.Exception ex) {
\r
799 throw new IllegalStateException(ex.toString());
\r
802 public java.lang.Object newInstance(java.lang.Object parent) {
\r
806 desc.setHandler(handler);
\r
807 desc.setMultivalued(false);
\r
808 addFieldDescriptor(desc);
\r
810 //-- validation code for: _id
\r
811 fieldValidator = new org.exolab.castor.xml.FieldValidator();
\r
813 org.exolab.castor.xml.validators.StringValidator typeValidator;
\r
814 typeValidator = new org.exolab.castor.xml.validators.StringValidator();
\r
815 fieldValidator.setValidator(typeValidator);
\r
816 typeValidator.setWhiteSpace("preserve");
\r
818 desc.setValidator(fieldValidator);
\r
819 //-- initialize element descriptors
\r
822 desc = new org.exolab.castor.xml.util.XMLFieldDescriptorImpl(java.lang.String.class, "_seqList", "seq", org.exolab.castor.xml.NodeType.Element);
\r
823 desc.setImmutable(true);
\r
824 handler = new org.exolab.castor.xml.XMLFieldHandler() {
\r
825 public java.lang.Object getValue( java.lang.Object object )
\r
826 throws IllegalStateException
\r
828 JGroup target = (JGroup) object;
\r
829 return target.getSeq();
\r
831 public void setValue( java.lang.Object object, java.lang.Object value)
\r
832 throws IllegalStateException, IllegalArgumentException
\r
835 JGroup target = (JGroup) object;
\r
836 target.addSeq( (java.lang.String) value);
\r
837 } catch (java.lang.Exception ex) {
\r
838 throw new IllegalStateException(ex.toString());
\r
841 public void resetValue(Object object) throws IllegalStateException, IllegalArgumentException {
\r
843 JGroup target = (JGroup) object;
\r
844 target.removeAllSeq();
\r
845 } catch (java.lang.Exception ex) {
\r
846 throw new IllegalStateException(ex.toString());
\r
849 public java.lang.Object newInstance(java.lang.Object parent) {
\r
853 desc.setHandler(handler);
\r
854 desc.setNameSpaceURI("www.jalview.org");
\r
855 desc.setRequired(true);
\r
856 desc.setMultivalued(true);
\r
857 addFieldDescriptor(desc);
\r
859 //-- validation code for: _seqList
\r
860 fieldValidator = new org.exolab.castor.xml.FieldValidator();
\r
861 fieldValidator.setMinOccurs(1);
\r
863 org.exolab.castor.xml.validators.StringValidator typeValidator;
\r
864 typeValidator = new org.exolab.castor.xml.validators.StringValidator();
\r
865 fieldValidator.setValidator(typeValidator);
\r
866 typeValidator.setWhiteSpace("preserve");
\r
868 desc.setValidator(fieldValidator);
\r
877 * Method getAccessMode.
\r
879 * @return the access mode specified for this class.
\r
881 public org.exolab.castor.mapping.AccessMode getAccessMode(
\r
887 * Method getIdentity.
\r
889 * @return the identity field, null if this class has no
\r
892 public org.exolab.castor.mapping.FieldDescriptor getIdentity(
\r
894 return super.getIdentity();
\r
898 * Method getJavaClass.
\r
900 * @return the Java class represented by this descriptor.
\r
902 public java.lang.Class getJavaClass(
\r
904 return jalview.schemabinding.version2.JGroup.class;
\r
908 * Method getNameSpacePrefix.
\r
910 * @return the namespace prefix to use when marshaling as XML.
\r
912 public java.lang.String getNameSpacePrefix(
\r
918 * Method getNameSpaceURI.
\r
920 * @return the namespace URI used when marshaling and
\r
921 * unmarshaling as XML.
\r
923 public java.lang.String getNameSpaceURI(
\r
929 * Method getValidator.
\r
931 * @return a specific validator for the class described by this
\r
934 public org.exolab.castor.xml.TypeValidator getValidator(
\r
940 * Method getXMLName.
\r
942 * @return the XML Name for the Class being described.
\r
944 public java.lang.String getXMLName(
\r
950 * Method isElementDefinition.
\r
952 * @return true if XML schema definition of this Class is that
\r
954 * element or element with anonymous type definition.
\r
956 public boolean isElementDefinition(
\r
958 return _elementDefinition;
\r