src/jalview/schemabinding/version2/descriptors/SequenceSetDescriptor.java

   1 /*\r
   2  * This class was automatically generated with \r
   3  * <a href="http://www.castor.org">Castor 1.1</a>, using an XML\r
   4  * Schema.\r
   5  * $Id$\r
   6  */\r
   7 \r
   8 package jalview.schemabinding.version2.descriptors;\r
   9 \r
  10   //---------------------------------/\r
  11  //- Imported classes and packages -/\r
  12 //---------------------------------/\r
  13 \r
  14 import jalview.schemabinding.version2.SequenceSet;\r
  15 \r
  16 /**\r
  17  * Class SequenceSetDescriptor.\r
  18  * \r
  19  * @version $Revision$ $Date$\r
  20  */\r
  21 public class SequenceSetDescriptor extends org.exolab.castor.xml.util.XMLClassDescriptorImpl {\r
  22 \r
  23 \r
  24       //--------------------------/\r
  25      //- Class/Member Variables -/\r
  26     //--------------------------/\r
  27 \r
  28     /**\r
  29      * Field _elementDefinition.\r
  30      */\r
  31     private boolean _elementDefinition;\r
  32 \r
  33     /**\r
  34      * Field _nsPrefix.\r
  35      */\r
  36     private java.lang.String _nsPrefix;\r
  37 \r
  38     /**\r
  39      * Field _nsURI.\r
  40      */\r
  41     private java.lang.String _nsURI;\r
  42 \r
  43     /**\r
  44      * Field _xmlName.\r
  45      */\r
  46     private java.lang.String _xmlName;\r
  47 \r
  48 \r
  49       //----------------/\r
  50      //- Constructors -/\r
  51     //----------------/\r
  52 \r
  53     public SequenceSetDescriptor() {\r
  54         super();\r
  55         _nsURI = "www.vamsas.ac.uk/jalview/version2";\r
  56         _xmlName = "SequenceSet";\r
  57         _elementDefinition = true;\r
  58         \r
  59         //-- set grouping compositor\r
  60         setCompositorAsSequence();\r
  61         org.exolab.castor.xml.util.XMLFieldDescriptorImpl  desc           = null;\r
  62         org.exolab.castor.mapping.FieldHandler             handler        = null;\r
  63         org.exolab.castor.xml.FieldValidator               fieldValidator = null;\r
  64         //-- initialize attribute descriptors\r
  65         \r
  66         //-- _gapChar\r
  67         desc = new org.exolab.castor.xml.util.XMLFieldDescriptorImpl(java.lang.String.class, "_gapChar", "gapChar", org.exolab.castor.xml.NodeType.Attribute);\r
  68         desc.setImmutable(true);\r
  69         handler = new org.exolab.castor.xml.XMLFieldHandler() {\r
  70             public java.lang.Object getValue( java.lang.Object object ) \r
  71                 throws IllegalStateException\r
  72             {\r
  73                 SequenceSet target = (SequenceSet) object;\r
  74                 return target.getGapChar();\r
  75             }\r
  76             public void setValue( java.lang.Object object, java.lang.Object value) \r
  77                 throws IllegalStateException, IllegalArgumentException\r
  78             {\r
  79                 try {\r
  80                     SequenceSet target = (SequenceSet) object;\r
  81                     target.setGapChar( (java.lang.String) value);\r
  82                 } catch (java.lang.Exception ex) {\r
  83                     throw new IllegalStateException(ex.toString());\r
  84                 }\r
  85             }\r
  86             public java.lang.Object newInstance(java.lang.Object parent) {\r
  87                 return null;\r
  88             }\r
  89         };\r
  90         desc.setHandler(handler);\r
  91         desc.setRequired(true);\r
  92         desc.setMultivalued(false);\r
  93         addFieldDescriptor(desc);\r
  94         \r
  95         //-- validation code for: _gapChar\r
  96         fieldValidator = new org.exolab.castor.xml.FieldValidator();\r
  97         fieldValidator.setMinOccurs(1);\r
  98         { //-- local scope\r
  99             org.exolab.castor.xml.validators.StringValidator typeValidator;\r
 100             typeValidator = new org.exolab.castor.xml.validators.StringValidator();\r
 101             fieldValidator.setValidator(typeValidator);\r
 102             typeValidator.setWhiteSpace("preserve");\r
 103         }\r
 104         desc.setValidator(fieldValidator);\r
 105         //-- initialize element descriptors\r
 106         \r
 107         //-- _sequenceList\r
 108         desc = new org.exolab.castor.xml.util.XMLFieldDescriptorImpl(jalview.schemabinding.version2.Sequence.class, "_sequenceList", "Sequence", org.exolab.castor.xml.NodeType.Element);\r
 109         handler = new org.exolab.castor.xml.XMLFieldHandler() {\r
 110             public java.lang.Object getValue( java.lang.Object object ) \r
 111                 throws IllegalStateException\r
 112             {\r
 113                 SequenceSet target = (SequenceSet) object;\r
 114                 return target.getSequence();\r
 115             }\r
 116             public void setValue( java.lang.Object object, java.lang.Object value) \r
 117                 throws IllegalStateException, IllegalArgumentException\r
 118             {\r
 119                 try {\r
 120                     SequenceSet target = (SequenceSet) object;\r
 121                     target.addSequence( (jalview.schemabinding.version2.Sequence) value);\r
 122                 } catch (java.lang.Exception ex) {\r
 123                     throw new IllegalStateException(ex.toString());\r
 124                 }\r
 125             }\r
 126             public void resetValue(Object object) throws IllegalStateException, IllegalArgumentException {\r
 127                 try {\r
 128                     SequenceSet target = (SequenceSet) object;\r
 129                     target.removeAllSequence();\r
 130                 } catch (java.lang.Exception ex) {\r
 131                     throw new IllegalStateException(ex.toString());\r
 132                 }\r
 133             }\r
 134             public java.lang.Object newInstance(java.lang.Object parent) {\r
 135                 return new jalview.schemabinding.version2.Sequence();\r
 136             }\r
 137         };\r
 138         desc.setHandler(handler);\r
 139         desc.setNameSpaceURI("www.vamsas.ac.uk/jalview/version2");\r
 140         desc.setMultivalued(true);\r
 141         addFieldDescriptor(desc);\r
 142         \r
 143         //-- validation code for: _sequenceList\r
 144         fieldValidator = new org.exolab.castor.xml.FieldValidator();\r
 145         fieldValidator.setMinOccurs(0);\r
 146         { //-- local scope\r
 147         }\r
 148         desc.setValidator(fieldValidator);\r
 149         //-- _annotationList\r
 150         desc = new org.exolab.castor.xml.util.XMLFieldDescriptorImpl(jalview.schemabinding.version2.Annotation.class, "_annotationList", "Annotation", org.exolab.castor.xml.NodeType.Element);\r
 151         handler = new org.exolab.castor.xml.XMLFieldHandler() {\r
 152             public java.lang.Object getValue( java.lang.Object object ) \r
 153                 throws IllegalStateException\r
 154             {\r
 155                 SequenceSet target = (SequenceSet) object;\r
 156                 return target.getAnnotation();\r
 157             }\r
 158             public void setValue( java.lang.Object object, java.lang.Object value) \r
 159                 throws IllegalStateException, IllegalArgumentException\r
 160             {\r
 161                 try {\r
 162                     SequenceSet target = (SequenceSet) object;\r
 163                     target.addAnnotation( (jalview.schemabinding.version2.Annotation) value);\r
 164                 } catch (java.lang.Exception ex) {\r
 165                     throw new IllegalStateException(ex.toString());\r
 166                 }\r
 167             }\r
 168             public void resetValue(Object object) throws IllegalStateException, IllegalArgumentException {\r
 169                 try {\r
 170                     SequenceSet target = (SequenceSet) object;\r
 171                     target.removeAllAnnotation();\r
 172                 } catch (java.lang.Exception ex) {\r
 173                     throw new IllegalStateException(ex.toString());\r
 174                 }\r
 175             }\r
 176             public java.lang.Object newInstance(java.lang.Object parent) {\r
 177                 return new jalview.schemabinding.version2.Annotation();\r
 178             }\r
 179         };\r
 180         desc.setHandler(handler);\r
 181         desc.setNameSpaceURI("www.vamsas.ac.uk/jalview/version2");\r
 182         desc.setMultivalued(true);\r
 183         addFieldDescriptor(desc);\r
 184         \r
 185         //-- validation code for: _annotationList\r
 186         fieldValidator = new org.exolab.castor.xml.FieldValidator();\r
 187         fieldValidator.setMinOccurs(0);\r
 188         { //-- local scope\r
 189         }\r
 190         desc.setValidator(fieldValidator);\r
 191         //-- _sequenceSetPropertiesList\r
 192         desc = new org.exolab.castor.xml.util.XMLFieldDescriptorImpl(jalview.schemabinding.version2.SequenceSetProperties.class, "_sequenceSetPropertiesList", "sequenceSetProperties", org.exolab.castor.xml.NodeType.Element);\r
 193         handler = new org.exolab.castor.xml.XMLFieldHandler() {\r
 194             public java.lang.Object getValue( java.lang.Object object ) \r
 195                 throws IllegalStateException\r
 196             {\r
 197                 SequenceSet target = (SequenceSet) object;\r
 198                 return target.getSequenceSetProperties();\r
 199             }\r
 200             public void setValue( java.lang.Object object, java.lang.Object value) \r
 201                 throws IllegalStateException, IllegalArgumentException\r
 202             {\r
 203                 try {\r
 204                     SequenceSet target = (SequenceSet) object;\r
 205                     target.addSequenceSetProperties( (jalview.schemabinding.version2.SequenceSetProperties) value);\r
 206                 } catch (java.lang.Exception ex) {\r
 207                     throw new IllegalStateException(ex.toString());\r
 208                 }\r
 209             }\r
 210             public void resetValue(Object object) throws IllegalStateException, IllegalArgumentException {\r
 211                 try {\r
 212                     SequenceSet target = (SequenceSet) object;\r
 213                     target.removeAllSequenceSetProperties();\r
 214                 } catch (java.lang.Exception ex) {\r
 215                     throw new IllegalStateException(ex.toString());\r
 216                 }\r
 217             }\r
 218             public java.lang.Object newInstance(java.lang.Object parent) {\r
 219                 return new jalview.schemabinding.version2.SequenceSetProperties();\r
 220             }\r
 221         };\r
 222         desc.setHandler(handler);\r
 223         desc.setNameSpaceURI("www.vamsas.ac.uk/jalview/version2");\r
 224         desc.setMultivalued(true);\r
 225         addFieldDescriptor(desc);\r
 226         \r
 227         //-- validation code for: _sequenceSetPropertiesList\r
 228         fieldValidator = new org.exolab.castor.xml.FieldValidator();\r
 229         fieldValidator.setMinOccurs(0);\r
 230         { //-- local scope\r
 231         }\r
 232         desc.setValidator(fieldValidator);\r
 233     }\r
 234 \r
 235 \r
 236       //-----------/\r
 237      //- Methods -/\r
 238     //-----------/\r
 239 \r
 240     /**\r
 241      * Method getAccessMode.\r
 242      * \r
 243      * @return the access mode specified for this class.\r
 244      */\r
 245     public org.exolab.castor.mapping.AccessMode getAccessMode(\r
 246     ) {\r
 247         return null;\r
 248     }\r
 249 \r
 250     /**\r
 251      * Method getIdentity.\r
 252      * \r
 253      * @return the identity field, null if this class has no\r
 254      * identity.\r
 255      */\r
 256     public org.exolab.castor.mapping.FieldDescriptor getIdentity(\r
 257     ) {\r
 258         return super.getIdentity();\r
 259     }\r
 260 \r
 261     /**\r
 262      * Method getJavaClass.\r
 263      * \r
 264      * @return the Java class represented by this descriptor.\r
 265      */\r
 266     public java.lang.Class getJavaClass(\r
 267     ) {\r
 268         return jalview.schemabinding.version2.SequenceSet.class;\r
 269     }\r
 270 \r
 271     /**\r
 272      * Method getNameSpacePrefix.\r
 273      * \r
 274      * @return the namespace prefix to use when marshaling as XML.\r
 275      */\r
 276     public java.lang.String getNameSpacePrefix(\r
 277     ) {\r
 278         return _nsPrefix;\r
 279     }\r
 280 \r
 281     /**\r
 282      * Method getNameSpaceURI.\r
 283      * \r
 284      * @return the namespace URI used when marshaling and\r
 285      * unmarshaling as XML.\r
 286      */\r
 287     public java.lang.String getNameSpaceURI(\r
 288     ) {\r
 289         return _nsURI;\r
 290     }\r
 291 \r
 292     /**\r
 293      * Method getValidator.\r
 294      * \r
 295      * @return a specific validator for the class described by this\r
 296      * ClassDescriptor.\r
 297      */\r
 298     public org.exolab.castor.xml.TypeValidator getValidator(\r
 299     ) {\r
 300         return this;\r
 301     }\r
 302 \r
 303     /**\r
 304      * Method getXMLName.\r
 305      * \r
 306      * @return the XML Name for the Class being described.\r
 307      */\r
 308     public java.lang.String getXMLName(\r
 309     ) {\r
 310         return _xmlName;\r
 311     }\r
 312 \r
 313     /**\r
 314      * Method isElementDefinition.\r
 315      * \r
 316      * @return true if XML schema definition of this Class is that\r
 317      * of a global\r
 318      * element or element with anonymous type definition.\r
 319      */\r
 320     public boolean isElementDefinition(\r
 321     ) {\r
 322         return _elementDefinition;\r
 323     }\r
 324 \r
 325 }\r