2 * Jalview - A Sequence Alignment Editor and Viewer (Version 2.5.1)
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3 * Copyright (C) 2010 J Procter, AM Waterhouse, G Barton, M Clamp, S Searle
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5 * This file is part of Jalview.
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7 * Jalview is free software: you can redistribute it and/or
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8 * modify it under the terms of the GNU General Public License
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9 * as published by the Free Software Foundation, either version 3 of the License, or (at your option) any later version.
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11 * Jalview is distributed in the hope that it will be useful, but
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12 * WITHOUT ANY WARRANTY; without even the implied warranty
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13 * of MERCHANTABILITY or FITNESS FOR A PARTICULAR
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14 * PURPOSE. See the GNU General Public License for more details.
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16 * You should have received a copy of the GNU General Public License along with Jalview. If not, see <http://www.gnu.org/licenses/>.
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18 package jalview.schemabinding.version2.descriptors;
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20 //---------------------------------/
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21 //- Imported classes and packages -/
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22 //---------------------------------/
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24 import jalview.schemabinding.version2.Tree;
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27 * Class TreeDescriptor.
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29 * @version $Revision$ $Date$
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31 public class TreeDescriptor extends
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32 org.exolab.castor.xml.util.XMLClassDescriptorImpl
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35 // --------------------------/
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36 // - Class/Member Variables -/
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37 // --------------------------/
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40 * Field _elementDefinition.
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42 private boolean _elementDefinition;
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47 private java.lang.String _nsPrefix;
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52 private java.lang.String _nsURI;
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57 private java.lang.String _xmlName;
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59 // ----------------/
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60 // - Constructors -/
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61 // ----------------/
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63 public TreeDescriptor()
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66 _nsURI = "www.jalview.org";
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68 _elementDefinition = true;
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70 // -- set grouping compositor
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71 setCompositorAsSequence();
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72 org.exolab.castor.xml.util.XMLFieldDescriptorImpl desc = null;
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73 org.exolab.castor.mapping.FieldHandler handler = null;
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74 org.exolab.castor.xml.FieldValidator fieldValidator = null;
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75 // -- initialize attribute descriptors
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78 desc = new org.exolab.castor.xml.util.XMLFieldDescriptorImpl(
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79 java.lang.Integer.TYPE, "_width", "width",
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80 org.exolab.castor.xml.NodeType.Attribute);
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81 handler = new org.exolab.castor.xml.XMLFieldHandler()
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83 public java.lang.Object getValue(java.lang.Object object)
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84 throws IllegalStateException
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86 Tree target = (Tree) object;
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87 if (!target.hasWidth())
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91 return new java.lang.Integer(target.getWidth());
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94 public void setValue(java.lang.Object object, java.lang.Object value)
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95 throws IllegalStateException, IllegalArgumentException
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99 Tree target = (Tree) object;
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100 // if null, use delete method for optional primitives
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103 target.deleteWidth();
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106 target.setWidth(((java.lang.Integer) value).intValue());
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107 } catch (java.lang.Exception ex)
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109 throw new IllegalStateException(ex.toString());
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113 public java.lang.Object newInstance(java.lang.Object parent)
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118 desc.setHandler(handler);
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119 desc.setMultivalued(false);
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120 addFieldDescriptor(desc);
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122 // -- validation code for: _width
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123 fieldValidator = new org.exolab.castor.xml.FieldValidator();
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124 { // -- local scope
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125 org.exolab.castor.xml.validators.IntValidator typeValidator;
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126 typeValidator = new org.exolab.castor.xml.validators.IntValidator();
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127 fieldValidator.setValidator(typeValidator);
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128 typeValidator.setMinInclusive(-2147483648);
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129 typeValidator.setMaxInclusive(2147483647);
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131 desc.setValidator(fieldValidator);
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133 desc = new org.exolab.castor.xml.util.XMLFieldDescriptorImpl(
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134 java.lang.Integer.TYPE, "_height", "height",
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135 org.exolab.castor.xml.NodeType.Attribute);
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136 handler = new org.exolab.castor.xml.XMLFieldHandler()
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138 public java.lang.Object getValue(java.lang.Object object)
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139 throws IllegalStateException
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141 Tree target = (Tree) object;
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142 if (!target.hasHeight())
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146 return new java.lang.Integer(target.getHeight());
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149 public void setValue(java.lang.Object object, java.lang.Object value)
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150 throws IllegalStateException, IllegalArgumentException
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154 Tree target = (Tree) object;
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155 // if null, use delete method for optional primitives
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158 target.deleteHeight();
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161 target.setHeight(((java.lang.Integer) value).intValue());
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162 } catch (java.lang.Exception ex)
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164 throw new IllegalStateException(ex.toString());
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168 public java.lang.Object newInstance(java.lang.Object parent)
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173 desc.setHandler(handler);
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174 desc.setMultivalued(false);
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175 addFieldDescriptor(desc);
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177 // -- validation code for: _height
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178 fieldValidator = new org.exolab.castor.xml.FieldValidator();
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179 { // -- local scope
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180 org.exolab.castor.xml.validators.IntValidator typeValidator;
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181 typeValidator = new org.exolab.castor.xml.validators.IntValidator();
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182 fieldValidator.setValidator(typeValidator);
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183 typeValidator.setMinInclusive(-2147483648);
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184 typeValidator.setMaxInclusive(2147483647);
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186 desc.setValidator(fieldValidator);
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188 desc = new org.exolab.castor.xml.util.XMLFieldDescriptorImpl(
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189 java.lang.Integer.TYPE, "_xpos", "xpos",
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190 org.exolab.castor.xml.NodeType.Attribute);
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191 handler = new org.exolab.castor.xml.XMLFieldHandler()
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193 public java.lang.Object getValue(java.lang.Object object)
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194 throws IllegalStateException
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196 Tree target = (Tree) object;
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197 if (!target.hasXpos())
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201 return new java.lang.Integer(target.getXpos());
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204 public void setValue(java.lang.Object object, java.lang.Object value)
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205 throws IllegalStateException, IllegalArgumentException
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209 Tree target = (Tree) object;
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210 // if null, use delete method for optional primitives
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213 target.deleteXpos();
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216 target.setXpos(((java.lang.Integer) value).intValue());
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217 } catch (java.lang.Exception ex)
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219 throw new IllegalStateException(ex.toString());
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223 public java.lang.Object newInstance(java.lang.Object parent)
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228 desc.setHandler(handler);
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229 desc.setMultivalued(false);
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230 addFieldDescriptor(desc);
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232 // -- validation code for: _xpos
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233 fieldValidator = new org.exolab.castor.xml.FieldValidator();
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234 { // -- local scope
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235 org.exolab.castor.xml.validators.IntValidator typeValidator;
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236 typeValidator = new org.exolab.castor.xml.validators.IntValidator();
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237 fieldValidator.setValidator(typeValidator);
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238 typeValidator.setMinInclusive(-2147483648);
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239 typeValidator.setMaxInclusive(2147483647);
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241 desc.setValidator(fieldValidator);
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243 desc = new org.exolab.castor.xml.util.XMLFieldDescriptorImpl(
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244 java.lang.Integer.TYPE, "_ypos", "ypos",
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245 org.exolab.castor.xml.NodeType.Attribute);
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246 handler = new org.exolab.castor.xml.XMLFieldHandler()
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248 public java.lang.Object getValue(java.lang.Object object)
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249 throws IllegalStateException
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251 Tree target = (Tree) object;
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252 if (!target.hasYpos())
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256 return new java.lang.Integer(target.getYpos());
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259 public void setValue(java.lang.Object object, java.lang.Object value)
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260 throws IllegalStateException, IllegalArgumentException
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264 Tree target = (Tree) object;
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265 // if null, use delete method for optional primitives
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268 target.deleteYpos();
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271 target.setYpos(((java.lang.Integer) value).intValue());
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272 } catch (java.lang.Exception ex)
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274 throw new IllegalStateException(ex.toString());
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278 public java.lang.Object newInstance(java.lang.Object parent)
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283 desc.setHandler(handler);
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284 desc.setMultivalued(false);
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285 addFieldDescriptor(desc);
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287 // -- validation code for: _ypos
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288 fieldValidator = new org.exolab.castor.xml.FieldValidator();
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289 { // -- local scope
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290 org.exolab.castor.xml.validators.IntValidator typeValidator;
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291 typeValidator = new org.exolab.castor.xml.validators.IntValidator();
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292 fieldValidator.setValidator(typeValidator);
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293 typeValidator.setMinInclusive(-2147483648);
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294 typeValidator.setMaxInclusive(2147483647);
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296 desc.setValidator(fieldValidator);
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298 desc = new org.exolab.castor.xml.util.XMLFieldDescriptorImpl(
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299 java.lang.String.class, "_fontName", "fontName",
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300 org.exolab.castor.xml.NodeType.Attribute);
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301 desc.setImmutable(true);
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302 handler = new org.exolab.castor.xml.XMLFieldHandler()
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304 public java.lang.Object getValue(java.lang.Object object)
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305 throws IllegalStateException
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307 Tree target = (Tree) object;
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308 return target.getFontName();
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311 public void setValue(java.lang.Object object, java.lang.Object value)
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312 throws IllegalStateException, IllegalArgumentException
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316 Tree target = (Tree) object;
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317 target.setFontName((java.lang.String) value);
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318 } catch (java.lang.Exception ex)
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320 throw new IllegalStateException(ex.toString());
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324 public java.lang.Object newInstance(java.lang.Object parent)
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329 desc.setHandler(handler);
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330 desc.setMultivalued(false);
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331 addFieldDescriptor(desc);
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333 // -- validation code for: _fontName
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334 fieldValidator = new org.exolab.castor.xml.FieldValidator();
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335 { // -- local scope
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336 org.exolab.castor.xml.validators.StringValidator typeValidator;
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337 typeValidator = new org.exolab.castor.xml.validators.StringValidator();
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338 fieldValidator.setValidator(typeValidator);
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339 typeValidator.setWhiteSpace("preserve");
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341 desc.setValidator(fieldValidator);
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343 desc = new org.exolab.castor.xml.util.XMLFieldDescriptorImpl(
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344 java.lang.Integer.TYPE, "_fontSize", "fontSize",
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345 org.exolab.castor.xml.NodeType.Attribute);
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346 handler = new org.exolab.castor.xml.XMLFieldHandler()
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348 public java.lang.Object getValue(java.lang.Object object)
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349 throws IllegalStateException
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351 Tree target = (Tree) object;
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352 if (!target.hasFontSize())
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356 return new java.lang.Integer(target.getFontSize());
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359 public void setValue(java.lang.Object object, java.lang.Object value)
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360 throws IllegalStateException, IllegalArgumentException
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364 Tree target = (Tree) object;
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365 // if null, use delete method for optional primitives
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368 target.deleteFontSize();
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371 target.setFontSize(((java.lang.Integer) value).intValue());
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372 } catch (java.lang.Exception ex)
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374 throw new IllegalStateException(ex.toString());
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378 public java.lang.Object newInstance(java.lang.Object parent)
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383 desc.setHandler(handler);
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384 desc.setMultivalued(false);
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385 addFieldDescriptor(desc);
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387 // -- validation code for: _fontSize
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388 fieldValidator = new org.exolab.castor.xml.FieldValidator();
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389 { // -- local scope
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390 org.exolab.castor.xml.validators.IntValidator typeValidator;
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391 typeValidator = new org.exolab.castor.xml.validators.IntValidator();
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392 fieldValidator.setValidator(typeValidator);
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393 typeValidator.setMinInclusive(-2147483648);
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394 typeValidator.setMaxInclusive(2147483647);
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396 desc.setValidator(fieldValidator);
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398 desc = new org.exolab.castor.xml.util.XMLFieldDescriptorImpl(
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399 java.lang.Integer.TYPE, "_fontStyle", "fontStyle",
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400 org.exolab.castor.xml.NodeType.Attribute);
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401 handler = new org.exolab.castor.xml.XMLFieldHandler()
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403 public java.lang.Object getValue(java.lang.Object object)
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404 throws IllegalStateException
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406 Tree target = (Tree) object;
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407 if (!target.hasFontStyle())
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411 return new java.lang.Integer(target.getFontStyle());
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414 public void setValue(java.lang.Object object, java.lang.Object value)
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415 throws IllegalStateException, IllegalArgumentException
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419 Tree target = (Tree) object;
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420 // if null, use delete method for optional primitives
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423 target.deleteFontStyle();
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426 target.setFontStyle(((java.lang.Integer) value).intValue());
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427 } catch (java.lang.Exception ex)
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429 throw new IllegalStateException(ex.toString());
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433 public java.lang.Object newInstance(java.lang.Object parent)
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438 desc.setHandler(handler);
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439 desc.setMultivalued(false);
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440 addFieldDescriptor(desc);
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442 // -- validation code for: _fontStyle
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443 fieldValidator = new org.exolab.castor.xml.FieldValidator();
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444 { // -- local scope
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445 org.exolab.castor.xml.validators.IntValidator typeValidator;
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446 typeValidator = new org.exolab.castor.xml.validators.IntValidator();
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447 fieldValidator.setValidator(typeValidator);
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448 typeValidator.setMinInclusive(-2147483648);
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449 typeValidator.setMaxInclusive(2147483647);
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451 desc.setValidator(fieldValidator);
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453 desc = new org.exolab.castor.xml.util.XMLFieldDescriptorImpl(
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454 java.lang.Float.TYPE, "_threshold", "threshold",
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455 org.exolab.castor.xml.NodeType.Attribute);
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456 handler = new org.exolab.castor.xml.XMLFieldHandler()
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458 public java.lang.Object getValue(java.lang.Object object)
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459 throws IllegalStateException
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461 Tree target = (Tree) object;
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462 if (!target.hasThreshold())
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466 return new java.lang.Float(target.getThreshold());
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469 public void setValue(java.lang.Object object, java.lang.Object value)
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470 throws IllegalStateException, IllegalArgumentException
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474 Tree target = (Tree) object;
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475 // if null, use delete method for optional primitives
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478 target.deleteThreshold();
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481 target.setThreshold(((java.lang.Float) value).floatValue());
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482 } catch (java.lang.Exception ex)
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484 throw new IllegalStateException(ex.toString());
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488 public java.lang.Object newInstance(java.lang.Object parent)
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493 desc.setHandler(handler);
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494 desc.setMultivalued(false);
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495 addFieldDescriptor(desc);
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497 // -- validation code for: _threshold
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498 fieldValidator = new org.exolab.castor.xml.FieldValidator();
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499 { // -- local scope
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500 org.exolab.castor.xml.validators.FloatValidator typeValidator;
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501 typeValidator = new org.exolab.castor.xml.validators.FloatValidator();
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502 fieldValidator.setValidator(typeValidator);
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503 typeValidator.setMinInclusive((float) -3.4028235E38);
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504 typeValidator.setMaxInclusive((float) 3.4028235E38);
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506 desc.setValidator(fieldValidator);
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507 // -- _showBootstrap
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508 desc = new org.exolab.castor.xml.util.XMLFieldDescriptorImpl(
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509 java.lang.Boolean.TYPE, "_showBootstrap", "showBootstrap",
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510 org.exolab.castor.xml.NodeType.Attribute);
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511 handler = new org.exolab.castor.xml.XMLFieldHandler()
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513 public java.lang.Object getValue(java.lang.Object object)
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514 throws IllegalStateException
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516 Tree target = (Tree) object;
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517 if (!target.hasShowBootstrap())
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521 return (target.getShowBootstrap() ? java.lang.Boolean.TRUE
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522 : java.lang.Boolean.FALSE);
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525 public void setValue(java.lang.Object object, java.lang.Object value)
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526 throws IllegalStateException, IllegalArgumentException
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530 Tree target = (Tree) object;
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531 // if null, use delete method for optional primitives
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534 target.deleteShowBootstrap();
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537 target.setShowBootstrap(((java.lang.Boolean) value)
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539 } catch (java.lang.Exception ex)
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541 throw new IllegalStateException(ex.toString());
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545 public java.lang.Object newInstance(java.lang.Object parent)
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550 desc.setHandler(handler);
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551 desc.setMultivalued(false);
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552 addFieldDescriptor(desc);
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554 // -- validation code for: _showBootstrap
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555 fieldValidator = new org.exolab.castor.xml.FieldValidator();
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556 { // -- local scope
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557 org.exolab.castor.xml.validators.BooleanValidator typeValidator;
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558 typeValidator = new org.exolab.castor.xml.validators.BooleanValidator();
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559 fieldValidator.setValidator(typeValidator);
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561 desc.setValidator(fieldValidator);
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562 // -- _showDistances
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563 desc = new org.exolab.castor.xml.util.XMLFieldDescriptorImpl(
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564 java.lang.Boolean.TYPE, "_showDistances", "showDistances",
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565 org.exolab.castor.xml.NodeType.Attribute);
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566 handler = new org.exolab.castor.xml.XMLFieldHandler()
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568 public java.lang.Object getValue(java.lang.Object object)
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569 throws IllegalStateException
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571 Tree target = (Tree) object;
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572 if (!target.hasShowDistances())
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576 return (target.getShowDistances() ? java.lang.Boolean.TRUE
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577 : java.lang.Boolean.FALSE);
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580 public void setValue(java.lang.Object object, java.lang.Object value)
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581 throws IllegalStateException, IllegalArgumentException
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585 Tree target = (Tree) object;
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586 // if null, use delete method for optional primitives
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589 target.deleteShowDistances();
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592 target.setShowDistances(((java.lang.Boolean) value)
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594 } catch (java.lang.Exception ex)
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596 throw new IllegalStateException(ex.toString());
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600 public java.lang.Object newInstance(java.lang.Object parent)
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605 desc.setHandler(handler);
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606 desc.setMultivalued(false);
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607 addFieldDescriptor(desc);
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609 // -- validation code for: _showDistances
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610 fieldValidator = new org.exolab.castor.xml.FieldValidator();
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611 { // -- local scope
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612 org.exolab.castor.xml.validators.BooleanValidator typeValidator;
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613 typeValidator = new org.exolab.castor.xml.validators.BooleanValidator();
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614 fieldValidator.setValidator(typeValidator);
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616 desc.setValidator(fieldValidator);
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617 // -- _markUnlinked
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618 desc = new org.exolab.castor.xml.util.XMLFieldDescriptorImpl(
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619 java.lang.Boolean.TYPE, "_markUnlinked", "markUnlinked",
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620 org.exolab.castor.xml.NodeType.Attribute);
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621 handler = new org.exolab.castor.xml.XMLFieldHandler()
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623 public java.lang.Object getValue(java.lang.Object object)
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624 throws IllegalStateException
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626 Tree target = (Tree) object;
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627 if (!target.hasMarkUnlinked())
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631 return (target.getMarkUnlinked() ? java.lang.Boolean.TRUE
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632 : java.lang.Boolean.FALSE);
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635 public void setValue(java.lang.Object object, java.lang.Object value)
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636 throws IllegalStateException, IllegalArgumentException
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640 Tree target = (Tree) object;
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641 // if null, use delete method for optional primitives
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644 target.deleteMarkUnlinked();
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648 .setMarkUnlinked(((java.lang.Boolean) value)
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650 } catch (java.lang.Exception ex)
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652 throw new IllegalStateException(ex.toString());
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656 public java.lang.Object newInstance(java.lang.Object parent)
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661 desc.setHandler(handler);
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662 desc.setMultivalued(false);
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663 addFieldDescriptor(desc);
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665 // -- validation code for: _markUnlinked
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666 fieldValidator = new org.exolab.castor.xml.FieldValidator();
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667 { // -- local scope
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668 org.exolab.castor.xml.validators.BooleanValidator typeValidator;
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669 typeValidator = new org.exolab.castor.xml.validators.BooleanValidator();
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670 fieldValidator.setValidator(typeValidator);
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672 desc.setValidator(fieldValidator);
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674 desc = new org.exolab.castor.xml.util.XMLFieldDescriptorImpl(
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675 java.lang.Boolean.TYPE, "_fitToWindow", "fitToWindow",
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676 org.exolab.castor.xml.NodeType.Attribute);
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677 handler = new org.exolab.castor.xml.XMLFieldHandler()
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679 public java.lang.Object getValue(java.lang.Object object)
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680 throws IllegalStateException
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682 Tree target = (Tree) object;
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683 if (!target.hasFitToWindow())
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687 return (target.getFitToWindow() ? java.lang.Boolean.TRUE
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688 : java.lang.Boolean.FALSE);
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691 public void setValue(java.lang.Object object, java.lang.Object value)
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692 throws IllegalStateException, IllegalArgumentException
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696 Tree target = (Tree) object;
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697 // if null, use delete method for optional primitives
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700 target.deleteFitToWindow();
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703 target.setFitToWindow(((java.lang.Boolean) value).booleanValue());
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704 } catch (java.lang.Exception ex)
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706 throw new IllegalStateException(ex.toString());
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710 public java.lang.Object newInstance(java.lang.Object parent)
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715 desc.setHandler(handler);
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716 desc.setMultivalued(false);
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717 addFieldDescriptor(desc);
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719 // -- validation code for: _fitToWindow
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720 fieldValidator = new org.exolab.castor.xml.FieldValidator();
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721 { // -- local scope
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722 org.exolab.castor.xml.validators.BooleanValidator typeValidator;
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723 typeValidator = new org.exolab.castor.xml.validators.BooleanValidator();
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724 fieldValidator.setValidator(typeValidator);
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726 desc.setValidator(fieldValidator);
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728 desc = new org.exolab.castor.xml.util.XMLFieldDescriptorImpl(
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729 java.lang.Boolean.TYPE, "_currentTree", "currentTree",
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730 org.exolab.castor.xml.NodeType.Attribute);
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731 handler = new org.exolab.castor.xml.XMLFieldHandler()
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733 public java.lang.Object getValue(java.lang.Object object)
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734 throws IllegalStateException
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736 Tree target = (Tree) object;
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737 if (!target.hasCurrentTree())
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741 return (target.getCurrentTree() ? java.lang.Boolean.TRUE
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742 : java.lang.Boolean.FALSE);
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745 public void setValue(java.lang.Object object, java.lang.Object value)
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746 throws IllegalStateException, IllegalArgumentException
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750 Tree target = (Tree) object;
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751 // if null, use delete method for optional primitives
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754 target.deleteCurrentTree();
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757 target.setCurrentTree(((java.lang.Boolean) value).booleanValue());
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758 } catch (java.lang.Exception ex)
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760 throw new IllegalStateException(ex.toString());
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764 public java.lang.Object newInstance(java.lang.Object parent)
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769 desc.setHandler(handler);
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770 desc.setMultivalued(false);
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771 addFieldDescriptor(desc);
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773 // -- validation code for: _currentTree
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774 fieldValidator = new org.exolab.castor.xml.FieldValidator();
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775 { // -- local scope
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776 org.exolab.castor.xml.validators.BooleanValidator typeValidator;
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777 typeValidator = new org.exolab.castor.xml.validators.BooleanValidator();
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778 fieldValidator.setValidator(typeValidator);
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780 desc.setValidator(fieldValidator);
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782 desc = new org.exolab.castor.xml.util.XMLFieldDescriptorImpl(
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783 java.lang.String.class, "_id", "id",
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784 org.exolab.castor.xml.NodeType.Attribute);
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785 super.setIdentity(desc);
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786 handler = new org.exolab.castor.xml.XMLFieldHandler()
\r
788 public java.lang.Object getValue(java.lang.Object object)
\r
789 throws IllegalStateException
\r
791 Tree target = (Tree) object;
\r
792 return target.getId();
\r
795 public void setValue(java.lang.Object object, java.lang.Object value)
\r
796 throws IllegalStateException, IllegalArgumentException
\r
800 Tree target = (Tree) object;
\r
801 target.setId((java.lang.String) value);
\r
802 } catch (java.lang.Exception ex)
\r
804 throw new IllegalStateException(ex.toString());
\r
808 public java.lang.Object newInstance(java.lang.Object parent)
\r
810 return new java.lang.String();
\r
813 desc.setHandler(handler);
\r
814 desc.setMultivalued(false);
\r
815 addFieldDescriptor(desc);
\r
817 // -- validation code for: _id
\r
818 fieldValidator = new org.exolab.castor.xml.FieldValidator();
\r
819 { // -- local scope
\r
820 org.exolab.castor.xml.validators.IdValidator typeValidator;
\r
821 typeValidator = new org.exolab.castor.xml.validators.IdValidator();
\r
822 fieldValidator.setValidator(typeValidator);
\r
824 desc.setValidator(fieldValidator);
\r
825 // -- initialize element descriptors
\r
828 desc = new org.exolab.castor.xml.util.XMLFieldDescriptorImpl(
\r
829 java.lang.String.class, "_title", "title",
\r
830 org.exolab.castor.xml.NodeType.Element);
\r
831 desc.setImmutable(true);
\r
832 handler = new org.exolab.castor.xml.XMLFieldHandler()
\r
834 public java.lang.Object getValue(java.lang.Object object)
\r
835 throws IllegalStateException
\r
837 Tree target = (Tree) object;
\r
838 return target.getTitle();
\r
841 public void setValue(java.lang.Object object, java.lang.Object value)
\r
842 throws IllegalStateException, IllegalArgumentException
\r
846 Tree target = (Tree) object;
\r
847 target.setTitle((java.lang.String) value);
\r
848 } catch (java.lang.Exception ex)
\r
850 throw new IllegalStateException(ex.toString());
\r
854 public java.lang.Object newInstance(java.lang.Object parent)
\r
859 desc.setHandler(handler);
\r
860 desc.setNameSpaceURI("www.jalview.org");
\r
861 desc.setMultivalued(false);
\r
862 addFieldDescriptor(desc);
\r
864 // -- validation code for: _title
\r
865 fieldValidator = new org.exolab.castor.xml.FieldValidator();
\r
866 { // -- local scope
\r
867 org.exolab.castor.xml.validators.StringValidator typeValidator;
\r
868 typeValidator = new org.exolab.castor.xml.validators.StringValidator();
\r
869 fieldValidator.setValidator(typeValidator);
\r
870 typeValidator.setWhiteSpace("preserve");
\r
872 desc.setValidator(fieldValidator);
\r
874 desc = new org.exolab.castor.xml.util.XMLFieldDescriptorImpl(
\r
875 java.lang.String.class, "_newick", "newick",
\r
876 org.exolab.castor.xml.NodeType.Element);
\r
877 desc.setImmutable(true);
\r
878 handler = new org.exolab.castor.xml.XMLFieldHandler()
\r
880 public java.lang.Object getValue(java.lang.Object object)
\r
881 throws IllegalStateException
\r
883 Tree target = (Tree) object;
\r
884 return target.getNewick();
\r
887 public void setValue(java.lang.Object object, java.lang.Object value)
\r
888 throws IllegalStateException, IllegalArgumentException
\r
892 Tree target = (Tree) object;
\r
893 target.setNewick((java.lang.String) value);
\r
894 } catch (java.lang.Exception ex)
\r
896 throw new IllegalStateException(ex.toString());
\r
900 public java.lang.Object newInstance(java.lang.Object parent)
\r
905 desc.setHandler(handler);
\r
906 desc.setNameSpaceURI("www.jalview.org");
\r
907 desc.setMultivalued(false);
\r
908 addFieldDescriptor(desc);
\r
910 // -- validation code for: _newick
\r
911 fieldValidator = new org.exolab.castor.xml.FieldValidator();
\r
912 { // -- local scope
\r
913 org.exolab.castor.xml.validators.StringValidator typeValidator;
\r
914 typeValidator = new org.exolab.castor.xml.validators.StringValidator();
\r
915 fieldValidator.setValidator(typeValidator);
\r
916 typeValidator.setWhiteSpace("preserve");
\r
918 desc.setValidator(fieldValidator);
\r
926 * Method getAccessMode.
\r
928 * @return the access mode specified for this class.
\r
930 public org.exolab.castor.mapping.AccessMode getAccessMode()
\r
936 * Method getIdentity.
\r
938 * @return the identity field, null if this class has no identity.
\r
940 public org.exolab.castor.mapping.FieldDescriptor getIdentity()
\r
942 return super.getIdentity();
\r
946 * Method getJavaClass.
\r
948 * @return the Java class represented by this descriptor.
\r
950 public java.lang.Class getJavaClass()
\r
952 return jalview.schemabinding.version2.Tree.class;
\r
956 * Method getNameSpacePrefix.
\r
958 * @return the namespace prefix to use when marshaling as XML.
\r
960 public java.lang.String getNameSpacePrefix()
\r
966 * Method getNameSpaceURI.
\r
968 * @return the namespace URI used when marshaling and unmarshaling as XML.
\r
970 public java.lang.String getNameSpaceURI()
\r
976 * Method getValidator.
\r
978 * @return a specific validator for the class described by this
\r
981 public org.exolab.castor.xml.TypeValidator getValidator()
\r
987 * Method getXMLName.
\r
989 * @return the XML Name for the Class being described.
\r
991 public java.lang.String getXMLName()
\r
997 * Method isElementDefinition.
\r
999 * @return true if XML schema definition of this Class is that of a global
\r
1000 * element or element with anonymous type definition.
\r
1002 public boolean isElementDefinition()
\r
1004 return _elementDefinition;
\r