src/org/vamsas/client/objects/SequenceSetDescriptor.java

   1 /*
   2  * This class was automatically generated with
   3  * <a href="http://www.castor.org">Castor 0.9.9M1</a>, using an XML
   4  * Schema.
   5  * $Id$
   6  */
   7
   8 package org.vamsas.client.objects;
   9
  10   //---------------------------------/
  11  //- Imported classes and packages -/
  12 //---------------------------------/
  13
  14 import org.exolab.castor.mapping.AccessMode;
  15 import org.exolab.castor.xml.TypeValidator;
  16 import org.exolab.castor.xml.XMLFieldDescriptor;
  17 import org.exolab.castor.xml.validators.*;
  18
  19 /**
  20  * Class SequenceSetDescriptor.
  21  *
  22  * @version $Revision$ $Date$
  23  */
  24 public class SequenceSetDescriptor extends org.exolab.castor.xml.util.XMLClassDescriptorImpl {
  25
  26
  27       //--------------------------/
  28      //- Class/Member Variables -/
  29     //--------------------------/
  30
  31     /**
  32      * Field nsPrefix
  33      */
  34     private java.lang.String nsPrefix;
  35
  36     /**
  37      * Field nsURI
  38      */
  39     private java.lang.String nsURI;
  40
  41     /**
  42      * Field xmlName
  43      */
  44     private java.lang.String xmlName;
  45
  46     /**
  47      * Field identity
  48      */
  49     private org.exolab.castor.xml.XMLFieldDescriptor identity;
  50
  51
  52       //----------------/
  53      //- Constructors -/
  54     //----------------/
  55
  56     public SequenceSetDescriptor()
  57      {
  58         super();
  59         nsURI = "http://www.vamsas.org";
  60         xmlName = "SequenceSet";
  61
  62         //-- set grouping compositor
  63         setCompositorAsSequence();
  64         org.exolab.castor.xml.util.XMLFieldDescriptorImpl  desc           = null;
  65         org.exolab.castor.mapping.FieldHandler             handler        = null;
  66         org.exolab.castor.xml.FieldValidator               fieldValidator = null;
  67         //-- initialize attribute descriptors
  68
  69         //-- _gapChar
  70         desc = new org.exolab.castor.xml.util.XMLFieldDescriptorImpl(java.lang.String.class, "_gapChar", "gapChar", org.exolab.castor.xml.NodeType.Attribute);
  71         desc.setImmutable(true);
  72         handler = new org.exolab.castor.xml.XMLFieldHandler() {
  73             public java.lang.Object getValue( java.lang.Object object )
  74                 throws IllegalStateException
  75             {
  76                 SequenceSet target = (SequenceSet) object;
  77                 return target.getGapChar();
  78             }
  79             public void setValue( java.lang.Object object, java.lang.Object value)
  80                 throws IllegalStateException, IllegalArgumentException
  81             {
  82                 try {
  83                     SequenceSet target = (SequenceSet) object;
  84                     target.setGapChar( (java.lang.String) value);
  85                 }
  86                 catch (java.lang.Exception ex) {
  87                     throw new IllegalStateException(ex.toString());
  88                 }
  89             }
  90             public java.lang.Object newInstance( java.lang.Object parent ) {
  91                 return null;
  92             }
  93         };
  94         desc.setHandler(handler);
  95         desc.setRequired(true);
  96         desc.setMultivalued(false);
  97         addFieldDescriptor(desc);
  98
  99         //-- validation code for: _gapChar
 100         fieldValidator = new org.exolab.castor.xml.FieldValidator();
 101         fieldValidator.setMinOccurs(1);
 102         { //-- local scope
 103             StringValidator typeValidator = new StringValidator();
 104             typeValidator.setWhiteSpace("preserve");
 105             fieldValidator.setValidator(typeValidator);
 106         }
 107         desc.setValidator(fieldValidator);
 108         //-- _aligned
 109         desc = new org.exolab.castor.xml.util.XMLFieldDescriptorImpl(java.lang.Boolean.TYPE, "_aligned", "aligned", org.exolab.castor.xml.NodeType.Attribute);
 110         handler = new org.exolab.castor.xml.XMLFieldHandler() {
 111             public java.lang.Object getValue( java.lang.Object object )
 112                 throws IllegalStateException
 113             {
 114                 SequenceSet target = (SequenceSet) object;
 115                 if(!target.hasAligned())
 116                     return null;
 117                 return (target.getAligned() ? java.lang.Boolean.TRUE : java.lang.Boolean.FALSE);
 118             }
 119             public void setValue( java.lang.Object object, java.lang.Object value)
 120                 throws IllegalStateException, IllegalArgumentException
 121             {
 122                 try {
 123                     SequenceSet target = (SequenceSet) object;
 124                     // if null, use delete method for optional primitives
 125                     if (value == null) {
 126                         target.deleteAligned();
 127                         return;
 128                     }
 129                     target.setAligned( ((java.lang.Boolean)value).booleanValue());
 130                 }
 131                 catch (java.lang.Exception ex) {
 132                     throw new IllegalStateException(ex.toString());
 133                 }
 134             }
 135             public java.lang.Object newInstance( java.lang.Object parent ) {
 136                 return null;
 137             }
 138         };
 139         desc.setHandler(handler);
 140         desc.setMultivalued(false);
 141         addFieldDescriptor(desc);
 142
 143         //-- validation code for: _aligned
 144         fieldValidator = new org.exolab.castor.xml.FieldValidator();
 145         { //-- local scope
 146             BooleanValidator typeValidator = new BooleanValidator();
 147             fieldValidator.setValidator(typeValidator);
 148         }
 149         desc.setValidator(fieldValidator);
 150         //-- initialize element descriptors
 151
 152         //-- _sequenceList
 153         desc = new org.exolab.castor.xml.util.XMLFieldDescriptorImpl(org.vamsas.client.objects.Sequence.class, "_sequenceList", "Sequence", org.exolab.castor.xml.NodeType.Element);
 154         handler = new org.exolab.castor.xml.XMLFieldHandler() {
 155             public java.lang.Object getValue( java.lang.Object object )
 156                 throws IllegalStateException
 157             {
 158                 SequenceSet target = (SequenceSet) object;
 159                 return target.getSequence();
 160             }
 161             public void setValue( java.lang.Object object, java.lang.Object value)
 162                 throws IllegalStateException, IllegalArgumentException
 163             {
 164                 try {
 165                     SequenceSet target = (SequenceSet) object;
 166                     target.addSequence( (org.vamsas.client.objects.Sequence) value);
 167                 }
 168                 catch (java.lang.Exception ex) {
 169                     throw new IllegalStateException(ex.toString());
 170                 }
 171             }
 172             public java.lang.Object newInstance( java.lang.Object parent ) {
 173                 return new org.vamsas.client.objects.Sequence();
 174             }
 175         };
 176         desc.setHandler(handler);
 177         desc.setNameSpaceURI("http://www.vamsas.org");
 178         desc.setRequired(true);
 179         desc.setMultivalued(true);
 180         addFieldDescriptor(desc);
 181
 182         //-- validation code for: _sequenceList
 183         fieldValidator = new org.exolab.castor.xml.FieldValidator();
 184         fieldValidator.setMinOccurs(1);
 185         { //-- local scope
 186         }
 187         desc.setValidator(fieldValidator);
 188         //-- _sequenceSetAnnotationsList
 189         desc = new org.exolab.castor.xml.util.XMLFieldDescriptorImpl(org.vamsas.client.objects.SequenceSetAnnotations.class, "_sequenceSetAnnotationsList", "SequenceSetAnnotations", org.exolab.castor.xml.NodeType.Element);
 190         handler = new org.exolab.castor.xml.XMLFieldHandler() {
 191             public java.lang.Object getValue( java.lang.Object object )
 192                 throws IllegalStateException
 193             {
 194                 SequenceSet target = (SequenceSet) object;
 195                 return target.getSequenceSetAnnotations();
 196             }
 197             public void setValue( java.lang.Object object, java.lang.Object value)
 198                 throws IllegalStateException, IllegalArgumentException
 199             {
 200                 try {
 201                     SequenceSet target = (SequenceSet) object;
 202                     target.addSequenceSetAnnotations( (org.vamsas.client.objects.SequenceSetAnnotations) value);
 203                 }
 204                 catch (java.lang.Exception ex) {
 205                     throw new IllegalStateException(ex.toString());
 206                 }
 207             }
 208             public java.lang.Object newInstance( java.lang.Object parent ) {
 209                 return new org.vamsas.client.objects.SequenceSetAnnotations();
 210             }
 211         };
 212         desc.setHandler(handler);
 213         desc.setNameSpaceURI("http://www.vamsas.org");
 214         desc.setMultivalued(true);
 215         addFieldDescriptor(desc);
 216
 217         //-- validation code for: _sequenceSetAnnotationsList
 218         fieldValidator = new org.exolab.castor.xml.FieldValidator();
 219         fieldValidator.setMinOccurs(0);
 220         { //-- local scope
 221         }
 222         desc.setValidator(fieldValidator);
 223         //-- _alignmentList
 224         desc = new org.exolab.castor.xml.util.XMLFieldDescriptorImpl(org.vamsas.client.objects.Alignment.class, "_alignmentList", "Alignment", org.exolab.castor.xml.NodeType.Element);
 225         handler = new org.exolab.castor.xml.XMLFieldHandler() {
 226             public java.lang.Object getValue( java.lang.Object object )
 227                 throws IllegalStateException
 228             {
 229                 SequenceSet target = (SequenceSet) object;
 230                 return target.getAlignment();
 231             }
 232             public void setValue( java.lang.Object object, java.lang.Object value)
 233                 throws IllegalStateException, IllegalArgumentException
 234             {
 235                 try {
 236                     SequenceSet target = (SequenceSet) object;
 237                     target.addAlignment( (org.vamsas.client.objects.Alignment) value);
 238                 }
 239                 catch (java.lang.Exception ex) {
 240                     throw new IllegalStateException(ex.toString());
 241                 }
 242             }
 243             public java.lang.Object newInstance( java.lang.Object parent ) {
 244                 return new org.vamsas.client.objects.Alignment();
 245             }
 246         };
 247         desc.setHandler(handler);
 248         desc.setNameSpaceURI("http://www.vamsas.org");
 249         desc.setMultivalued(true);
 250         addFieldDescriptor(desc);
 251
 252         //-- validation code for: _alignmentList
 253         fieldValidator = new org.exolab.castor.xml.FieldValidator();
 254         fieldValidator.setMinOccurs(0);
 255         { //-- local scope
 256         }
 257         desc.setValidator(fieldValidator);
 258         //-- _tree
 259         desc = new org.exolab.castor.xml.util.XMLFieldDescriptorImpl(org.vamsas.client.objects.Tree.class, "_tree", "tree", org.exolab.castor.xml.NodeType.Element);
 260         handler = new org.exolab.castor.xml.XMLFieldHandler() {
 261             public java.lang.Object getValue( java.lang.Object object )
 262                 throws IllegalStateException
 263             {
 264                 SequenceSet target = (SequenceSet) object;
 265                 return target.getTree();
 266             }
 267             public void setValue( java.lang.Object object, java.lang.Object value)
 268                 throws IllegalStateException, IllegalArgumentException
 269             {
 270                 try {
 271                     SequenceSet target = (SequenceSet) object;
 272                     target.setTree( (org.vamsas.client.objects.Tree) value);
 273                 }
 274                 catch (java.lang.Exception ex) {
 275                     throw new IllegalStateException(ex.toString());
 276                 }
 277             }
 278             public java.lang.Object newInstance( java.lang.Object parent ) {
 279                 return new org.vamsas.client.objects.Tree();
 280             }
 281         };
 282         desc.setHandler(handler);
 283         desc.setNameSpaceURI("http://www.vamsas.org");
 284         desc.setRequired(true);
 285         desc.setMultivalued(false);
 286         addFieldDescriptor(desc);
 287
 288         //-- validation code for: _tree
 289         fieldValidator = new org.exolab.castor.xml.FieldValidator();
 290         fieldValidator.setMinOccurs(1);
 291         { //-- local scope
 292         }
 293         desc.setValidator(fieldValidator);
 294         //-- _provenance
 295         desc = new org.exolab.castor.xml.util.XMLFieldDescriptorImpl(org.vamsas.client.objects.Provenance.class, "_provenance", "Provenance", org.exolab.castor.xml.NodeType.Element);
 296         handler = new org.exolab.castor.xml.XMLFieldHandler() {
 297             public java.lang.Object getValue( java.lang.Object object )
 298                 throws IllegalStateException
 299             {
 300                 SequenceSet target = (SequenceSet) object;
 301                 return target.getProvenance();
 302             }
 303             public void setValue( java.lang.Object object, java.lang.Object value)
 304                 throws IllegalStateException, IllegalArgumentException
 305             {
 306                 try {
 307                     SequenceSet target = (SequenceSet) object;
 308                     target.setProvenance( (org.vamsas.client.objects.Provenance) value);
 309                 }
 310                 catch (java.lang.Exception ex) {
 311                     throw new IllegalStateException(ex.toString());
 312                 }
 313             }
 314             public java.lang.Object newInstance( java.lang.Object parent ) {
 315                 return new org.vamsas.client.objects.Provenance();
 316             }
 317         };
 318         desc.setHandler(handler);
 319         desc.setNameSpaceURI("http://www.vamsas.org");
 320         desc.setRequired(true);
 321         desc.setMultivalued(false);
 322         addFieldDescriptor(desc);
 323
 324         //-- validation code for: _provenance
 325         fieldValidator = new org.exolab.castor.xml.FieldValidator();
 326         fieldValidator.setMinOccurs(1);
 327         { //-- local scope
 328         }
 329         desc.setValidator(fieldValidator);
 330     } //-- org.vamsas.client.objects.SequenceSetDescriptor()
 331
 332
 333       //-----------/
 334      //- Methods -/
 335     //-----------/
 336
 337     /**
 338      * Method getAccessMode
 339      *
 340      *
 341      *
 342      * @return AccessMode
 343      */
 344     public org.exolab.castor.mapping.AccessMode getAccessMode()
 345     {
 346         return null;
 347     } //-- org.exolab.castor.mapping.AccessMode getAccessMode()
 348
 349     /**
 350      * Method getExtends
 351      *
 352      *
 353      *
 354      * @return ClassDescriptor
 355      */
 356     public org.exolab.castor.mapping.ClassDescriptor getExtends()
 357     {
 358         return null;
 359     } //-- org.exolab.castor.mapping.ClassDescriptor getExtends()
 360
 361     /**
 362      * Method getIdentity
 363      *
 364      *
 365      *
 366      * @return FieldDescriptor
 367      */
 368     public org.exolab.castor.mapping.FieldDescriptor getIdentity()
 369     {
 370         return identity;
 371     } //-- org.exolab.castor.mapping.FieldDescriptor getIdentity()
 372
 373     /**
 374      * Method getJavaClass
 375      *
 376      *
 377      *
 378      * @return Class
 379      */
 380     public java.lang.Class getJavaClass()
 381     {
 382         return org.vamsas.client.objects.SequenceSet.class;
 383     } //-- java.lang.Class getJavaClass()
 384
 385     /**
 386      * Method getNameSpacePrefix
 387      *
 388      *
 389      *
 390      * @return String
 391      */
 392     public java.lang.String getNameSpacePrefix()
 393     {
 394         return nsPrefix;
 395     } //-- java.lang.String getNameSpacePrefix()
 396
 397     /**
 398      * Method getNameSpaceURI
 399      *
 400      *
 401      *
 402      * @return String
 403      */
 404     public java.lang.String getNameSpaceURI()
 405     {
 406         return nsURI;
 407     } //-- java.lang.String getNameSpaceURI()
 408
 409     /**
 410      * Method getValidator
 411      *
 412      *
 413      *
 414      * @return TypeValidator
 415      */
 416     public org.exolab.castor.xml.TypeValidator getValidator()
 417     {
 418         return this;
 419     } //-- org.exolab.castor.xml.TypeValidator getValidator()
 420
 421     /**
 422      * Method getXMLName
 423      *
 424      *
 425      *
 426      * @return String
 427      */
 428     public java.lang.String getXMLName()
 429     {
 430         return xmlName;
 431     } //-- java.lang.String getXMLName()
 432
 433 }