src/org/vamsas/objects/core/AlignmentDescriptor.java

   1 /*
   2  * This class was automatically generated with
   3  * <a href="http://www.castor.org">Castor 0.9.9M2</a>, using an XML
   4  * Schema.
   5  * $Id$
   6  */
   7
   8 package org.vamsas.objects.core;
   9
  10   //---------------------------------/
  11  //- Imported classes and packages -/
  12 //---------------------------------/
  13
  14 import org.exolab.castor.mapping.AccessMode;
  15 import org.exolab.castor.xml.TypeValidator;
  16 import org.exolab.castor.xml.XMLFieldDescriptor;
  17 import org.exolab.castor.xml.validators.*;
  18
  19 /**
  20  * Class AlignmentDescriptor.
  21  *
  22  * @version $Revision$ $Date$
  23  */
  24 public class AlignmentDescriptor extends org.exolab.castor.xml.util.XMLClassDescriptorImpl {
  25
  26
  27       //--------------------------/
  28      //- Class/Member Variables -/
  29     //--------------------------/
  30
  31     /**
  32      * Field nsPrefix
  33      */
  34     private java.lang.String nsPrefix;
  35
  36     /**
  37      * Field nsURI
  38      */
  39     private java.lang.String nsURI;
  40
  41     /**
  42      * Field xmlName
  43      */
  44     private java.lang.String xmlName;
  45
  46     /**
  47      * Field identity
  48      */
  49     private org.exolab.castor.xml.XMLFieldDescriptor identity;
  50
  51
  52       //----------------/
  53      //- Constructors -/
  54     //----------------/
  55
  56     public AlignmentDescriptor()
  57      {
  58         super();
  59         nsURI = "http://www.vamsas.org";
  60         xmlName = "Alignment";
  61
  62         //-- set grouping compositor
  63         setCompositorAsSequence();
  64         org.exolab.castor.xml.util.XMLFieldDescriptorImpl  desc           = null;
  65         org.exolab.castor.mapping.FieldHandler             handler        = null;
  66         org.exolab.castor.xml.FieldValidator               fieldValidator = null;
  67         //-- initialize attribute descriptors
  68
  69         //-- _id
  70         desc = new org.exolab.castor.xml.util.XMLFieldDescriptorImpl(java.lang.String.class, "_id", "id", org.exolab.castor.xml.NodeType.Attribute);
  71         this.identity = desc;
  72         handler = new org.exolab.castor.xml.XMLFieldHandler() {
  73             public java.lang.Object getValue( java.lang.Object object )
  74                 throws IllegalStateException
  75             {
  76                 Alignment target = (Alignment) object;
  77                 return target.getId();
  78             }
  79             public void setValue( java.lang.Object object, java.lang.Object value)
  80                 throws IllegalStateException, IllegalArgumentException
  81             {
  82                 try {
  83                     Alignment target = (Alignment) object;
  84                     target.setId( (java.lang.String) value);
  85                 }
  86                 catch (java.lang.Exception ex) {
  87                     throw new IllegalStateException(ex.toString());
  88                 }
  89             }
  90             public java.lang.Object newInstance( java.lang.Object parent ) {
  91                 return new java.lang.String();
  92             }
  93         };
  94         desc.setHandler(handler);
  95         desc.setMultivalued(false);
  96         addFieldDescriptor(desc);
  97
  98         //-- validation code for: _id
  99         fieldValidator = new org.exolab.castor.xml.FieldValidator();
 100         { //-- local scope
 101         }
 102         desc.setValidator(fieldValidator);
 103         //-- initialize element descriptors
 104
 105         //-- _alignmentAnnotations
 106         desc = new org.exolab.castor.xml.util.XMLFieldDescriptorImpl(org.vamsas.objects.core.AlignmentAnnotations.class, "_alignmentAnnotations", "AlignmentAnnotations", org.exolab.castor.xml.NodeType.Element);
 107         handler = new org.exolab.castor.xml.XMLFieldHandler() {
 108             public java.lang.Object getValue( java.lang.Object object )
 109                 throws IllegalStateException
 110             {
 111                 Alignment target = (Alignment) object;
 112                 return target.getAlignmentAnnotations();
 113             }
 114             public void setValue( java.lang.Object object, java.lang.Object value)
 115                 throws IllegalStateException, IllegalArgumentException
 116             {
 117                 try {
 118                     Alignment target = (Alignment) object;
 119                     target.setAlignmentAnnotations( (org.vamsas.objects.core.AlignmentAnnotations) value);
 120                 }
 121                 catch (java.lang.Exception ex) {
 122                     throw new IllegalStateException(ex.toString());
 123                 }
 124             }
 125             public java.lang.Object newInstance( java.lang.Object parent ) {
 126                 return new org.vamsas.objects.core.AlignmentAnnotations();
 127             }
 128         };
 129         desc.setHandler(handler);
 130         desc.setNameSpaceURI("http://www.vamsas.org");
 131         desc.setMultivalued(false);
 132         addFieldDescriptor(desc);
 133
 134         //-- validation code for: _alignmentAnnotations
 135         fieldValidator = new org.exolab.castor.xml.FieldValidator();
 136         { //-- local scope
 137         }
 138         desc.setValidator(fieldValidator);
 139         //-- _treeList
 140         desc = new org.exolab.castor.xml.util.XMLFieldDescriptorImpl(org.vamsas.objects.core.Tree.class, "_treeList", "Tree", org.exolab.castor.xml.NodeType.Element);
 141         handler = new org.exolab.castor.xml.XMLFieldHandler() {
 142             public java.lang.Object getValue( java.lang.Object object )
 143                 throws IllegalStateException
 144             {
 145                 Alignment target = (Alignment) object;
 146                 return target.getTree();
 147             }
 148             public void setValue( java.lang.Object object, java.lang.Object value)
 149                 throws IllegalStateException, IllegalArgumentException
 150             {
 151                 try {
 152                     Alignment target = (Alignment) object;
 153                     target.addTree( (org.vamsas.objects.core.Tree) value);
 154                 }
 155                 catch (java.lang.Exception ex) {
 156                     throw new IllegalStateException(ex.toString());
 157                 }
 158             }
 159             public java.lang.Object newInstance( java.lang.Object parent ) {
 160                 return new org.vamsas.objects.core.Tree();
 161             }
 162         };
 163         desc.setHandler(handler);
 164         desc.setNameSpaceURI("http://www.vamsas.org");
 165         desc.setMultivalued(true);
 166         addFieldDescriptor(desc);
 167
 168         //-- validation code for: _treeList
 169         fieldValidator = new org.exolab.castor.xml.FieldValidator();
 170         fieldValidator.setMinOccurs(0);
 171         { //-- local scope
 172         }
 173         desc.setValidator(fieldValidator);
 174         //-- _alignmentSequenceList
 175         desc = new org.exolab.castor.xml.util.XMLFieldDescriptorImpl(org.vamsas.objects.core.AlignmentSequence.class, "_alignmentSequenceList", "alignmentSequence", org.exolab.castor.xml.NodeType.Element);
 176         handler = new org.exolab.castor.xml.XMLFieldHandler() {
 177             public java.lang.Object getValue( java.lang.Object object )
 178                 throws IllegalStateException
 179             {
 180                 Alignment target = (Alignment) object;
 181                 return target.getAlignmentSequence();
 182             }
 183             public void setValue( java.lang.Object object, java.lang.Object value)
 184                 throws IllegalStateException, IllegalArgumentException
 185             {
 186                 try {
 187                     Alignment target = (Alignment) object;
 188                     target.addAlignmentSequence( (org.vamsas.objects.core.AlignmentSequence) value);
 189                 }
 190                 catch (java.lang.Exception ex) {
 191                     throw new IllegalStateException(ex.toString());
 192                 }
 193             }
 194             public java.lang.Object newInstance( java.lang.Object parent ) {
 195                 return new org.vamsas.objects.core.AlignmentSequence();
 196             }
 197         };
 198         desc.setHandler(handler);
 199         desc.setNameSpaceURI("http://www.vamsas.org");
 200         desc.setRequired(true);
 201         desc.setMultivalued(true);
 202         addFieldDescriptor(desc);
 203
 204         //-- validation code for: _alignmentSequenceList
 205         fieldValidator = new org.exolab.castor.xml.FieldValidator();
 206         fieldValidator.setMinOccurs(2);
 207         { //-- local scope
 208         }
 209         desc.setValidator(fieldValidator);
 210         //-- _provenance
 211         desc = new org.exolab.castor.xml.util.XMLFieldDescriptorImpl(org.vamsas.objects.core.Provenance.class, "_provenance", "Provenance", org.exolab.castor.xml.NodeType.Element);
 212         handler = new org.exolab.castor.xml.XMLFieldHandler() {
 213             public java.lang.Object getValue( java.lang.Object object )
 214                 throws IllegalStateException
 215             {
 216                 Alignment target = (Alignment) object;
 217                 return target.getProvenance();
 218             }
 219             public void setValue( java.lang.Object object, java.lang.Object value)
 220                 throws IllegalStateException, IllegalArgumentException
 221             {
 222                 try {
 223                     Alignment target = (Alignment) object;
 224                     target.setProvenance( (org.vamsas.objects.core.Provenance) value);
 225                 }
 226                 catch (java.lang.Exception ex) {
 227                     throw new IllegalStateException(ex.toString());
 228                 }
 229             }
 230             public java.lang.Object newInstance( java.lang.Object parent ) {
 231                 return new org.vamsas.objects.core.Provenance();
 232             }
 233         };
 234         desc.setHandler(handler);
 235         desc.setNameSpaceURI("http://www.vamsas.org");
 236         desc.setRequired(true);
 237         desc.setMultivalued(false);
 238         addFieldDescriptor(desc);
 239
 240         //-- validation code for: _provenance
 241         fieldValidator = new org.exolab.castor.xml.FieldValidator();
 242         fieldValidator.setMinOccurs(1);
 243         { //-- local scope
 244         }
 245         desc.setValidator(fieldValidator);
 246     } //-- org.vamsas.objects.core.AlignmentDescriptor()
 247
 248
 249       //-----------/
 250      //- Methods -/
 251     //-----------/
 252
 253     /**
 254      * Method getAccessMode
 255      *
 256      *
 257      *
 258      * @return AccessMode
 259      */
 260     public org.exolab.castor.mapping.AccessMode getAccessMode()
 261     {
 262         return null;
 263     } //-- org.exolab.castor.mapping.AccessMode getAccessMode()
 264
 265     /**
 266      * Method getExtends
 267      *
 268      *
 269      *
 270      * @return ClassDescriptor
 271      */
 272     public org.exolab.castor.mapping.ClassDescriptor getExtends()
 273     {
 274         return null;
 275     } //-- org.exolab.castor.mapping.ClassDescriptor getExtends()
 276
 277     /**
 278      * Method getIdentity
 279      *
 280      *
 281      *
 282      * @return FieldDescriptor
 283      */
 284     public org.exolab.castor.mapping.FieldDescriptor getIdentity()
 285     {
 286         return identity;
 287     } //-- org.exolab.castor.mapping.FieldDescriptor getIdentity()
 288
 289     /**
 290      * Method getJavaClass
 291      *
 292      *
 293      *
 294      * @return Class
 295      */
 296     public java.lang.Class getJavaClass()
 297     {
 298         return org.vamsas.objects.core.Alignment.class;
 299     } //-- java.lang.Class getJavaClass()
 300
 301     /**
 302      * Method getNameSpacePrefix
 303      *
 304      *
 305      *
 306      * @return String
 307      */
 308     public java.lang.String getNameSpacePrefix()
 309     {
 310         return nsPrefix;
 311     } //-- java.lang.String getNameSpacePrefix()
 312
 313     /**
 314      * Method getNameSpaceURI
 315      *
 316      *
 317      *
 318      * @return String
 319      */
 320     public java.lang.String getNameSpaceURI()
 321     {
 322         return nsURI;
 323     } //-- java.lang.String getNameSpaceURI()
 324
 325     /**
 326      * Method getValidator
 327      *
 328      *
 329      *
 330      * @return TypeValidator
 331      */
 332     public org.exolab.castor.xml.TypeValidator getValidator()
 333     {
 334         return this;
 335     } //-- org.exolab.castor.xml.TypeValidator getValidator()
 336
 337     /**
 338      * Method getXMLName
 339      *
 340      *
 341      *
 342      * @return String
 343      */
 344     public java.lang.String getXMLName()
 345     {
 346         return xmlName;
 347     } //-- java.lang.String getXMLName()
 348
 349 }