src/org/vamsas/objects/core/AlignmentDescriptor.java

   1 /*
   2  * This class was automatically generated with
   3  * <a href="http://www.castor.org">Castor 0.9.9M2</a>, using an XML
   4  * Schema.
   5  * $Id$
   6  */
   7
   8 package org.vamsas.objects.core;
   9
  10   //---------------------------------/
  11  //- Imported classes and packages -/
  12 //---------------------------------/
  13
  14 import org.exolab.castor.mapping.AccessMode;
  15 import org.exolab.castor.xml.TypeValidator;
  16 import org.exolab.castor.xml.XMLFieldDescriptor;
  17 import org.exolab.castor.xml.validators.*;
  18
  19 /**
  20  * Class AlignmentDescriptor.
  21  *
  22  * @version $Revision$ $Date$
  23  */
  24 public class AlignmentDescriptor extends org.exolab.castor.xml.util.XMLClassDescriptorImpl {
  25
  26
  27       //--------------------------/
  28      //- Class/Member Variables -/
  29     //--------------------------/
  30
  31     /**
  32      * Field nsPrefix
  33      */
  34     private java.lang.String nsPrefix;
  35
  36     /**
  37      * Field nsURI
  38      */
  39     private java.lang.String nsURI;
  40
  41     /**
  42      * Field xmlName
  43      */
  44     private java.lang.String xmlName;
  45
  46     /**
  47      * Field identity
  48      */
  49     private org.exolab.castor.xml.XMLFieldDescriptor identity;
  50
  51
  52       //----------------/
  53      //- Constructors -/
  54     //----------------/
  55
  56     public AlignmentDescriptor()
  57      {
  58         super();
  59         nsURI = "http://www.vamsas.org";
  60         xmlName = "Alignment";
  61
  62         //-- set grouping compositor
  63         setCompositorAsSequence();
  64         org.exolab.castor.xml.util.XMLFieldDescriptorImpl  desc           = null;
  65         org.exolab.castor.mapping.FieldHandler             handler        = null;
  66         org.exolab.castor.xml.FieldValidator               fieldValidator = null;
  67         //-- initialize attribute descriptors
  68
  69         //-- _gapChar
  70         desc = new org.exolab.castor.xml.util.XMLFieldDescriptorImpl(java.lang.String.class, "_gapChar", "gapChar", org.exolab.castor.xml.NodeType.Attribute);
  71         desc.setImmutable(true);
  72         handler = new org.exolab.castor.xml.XMLFieldHandler() {
  73             public java.lang.Object getValue( java.lang.Object object )
  74                 throws IllegalStateException
  75             {
  76                 Alignment target = (Alignment) object;
  77                 return target.getGapChar();
  78             }
  79             public void setValue( java.lang.Object object, java.lang.Object value)
  80                 throws IllegalStateException, IllegalArgumentException
  81             {
  82                 try {
  83                     Alignment target = (Alignment) object;
  84                     target.setGapChar( (java.lang.String) value);
  85                 }
  86                 catch (java.lang.Exception ex) {
  87                     throw new IllegalStateException(ex.toString());
  88                 }
  89             }
  90             public java.lang.Object newInstance( java.lang.Object parent ) {
  91                 return null;
  92             }
  93         };
  94         desc.setHandler(handler);
  95         desc.setRequired(true);
  96         desc.setMultivalued(false);
  97         addFieldDescriptor(desc);
  98
  99         //-- validation code for: _gapChar
 100         fieldValidator = new org.exolab.castor.xml.FieldValidator();
 101         fieldValidator.setMinOccurs(1);
 102         { //-- local scope
 103             StringValidator typeValidator = new StringValidator();
 104             typeValidator.setWhiteSpace("preserve");
 105             fieldValidator.setValidator(typeValidator);
 106         }
 107         desc.setValidator(fieldValidator);
 108         //-- _aligned
 109         desc = new org.exolab.castor.xml.util.XMLFieldDescriptorImpl(java.lang.Boolean.TYPE, "_aligned", "aligned", org.exolab.castor.xml.NodeType.Attribute);
 110         handler = new org.exolab.castor.xml.XMLFieldHandler() {
 111             public java.lang.Object getValue( java.lang.Object object )
 112                 throws IllegalStateException
 113             {
 114                 Alignment target = (Alignment) object;
 115                 if(!target.hasAligned())
 116                     return null;
 117                 return (target.getAligned() ? java.lang.Boolean.TRUE : java.lang.Boolean.FALSE);
 118             }
 119             public void setValue( java.lang.Object object, java.lang.Object value)
 120                 throws IllegalStateException, IllegalArgumentException
 121             {
 122                 try {
 123                     Alignment target = (Alignment) object;
 124                     // if null, use delete method for optional primitives
 125                     if (value == null) {
 126                         target.deleteAligned();
 127                         return;
 128                     }
 129                     target.setAligned( ((java.lang.Boolean)value).booleanValue());
 130                 }
 131                 catch (java.lang.Exception ex) {
 132                     throw new IllegalStateException(ex.toString());
 133                 }
 134             }
 135             public java.lang.Object newInstance( java.lang.Object parent ) {
 136                 return null;
 137             }
 138         };
 139         desc.setHandler(handler);
 140         desc.setMultivalued(false);
 141         addFieldDescriptor(desc);
 142
 143         //-- validation code for: _aligned
 144         fieldValidator = new org.exolab.castor.xml.FieldValidator();
 145         { //-- local scope
 146             BooleanValidator typeValidator = new BooleanValidator();
 147             fieldValidator.setValidator(typeValidator);
 148         }
 149         desc.setValidator(fieldValidator);
 150         //-- _id
 151         desc = new org.exolab.castor.xml.util.XMLFieldDescriptorImpl(java.lang.String.class, "_id", "id", org.exolab.castor.xml.NodeType.Attribute);
 152         this.identity = desc;
 153         handler = new org.exolab.castor.xml.XMLFieldHandler() {
 154             public java.lang.Object getValue( java.lang.Object object )
 155                 throws IllegalStateException
 156             {
 157                 Alignment target = (Alignment) object;
 158                 return target.getId();
 159             }
 160             public void setValue( java.lang.Object object, java.lang.Object value)
 161                 throws IllegalStateException, IllegalArgumentException
 162             {
 163                 try {
 164                     Alignment target = (Alignment) object;
 165                     target.setId( (java.lang.String) value);
 166                 }
 167                 catch (java.lang.Exception ex) {
 168                     throw new IllegalStateException(ex.toString());
 169                 }
 170             }
 171             public java.lang.Object newInstance( java.lang.Object parent ) {
 172                 return new java.lang.String();
 173             }
 174         };
 175         desc.setHandler(handler);
 176         desc.setMultivalued(false);
 177         addFieldDescriptor(desc);
 178
 179         //-- validation code for: _id
 180         fieldValidator = new org.exolab.castor.xml.FieldValidator();
 181         { //-- local scope
 182         }
 183         desc.setValidator(fieldValidator);
 184         //-- initialize element descriptors
 185
 186         //-- _alignmentAnnotationsList
 187         desc = new org.exolab.castor.xml.util.XMLFieldDescriptorImpl(org.vamsas.objects.core.AlignmentAnnotations.class, "_alignmentAnnotationsList", "AlignmentAnnotations", org.exolab.castor.xml.NodeType.Element);
 188         handler = new org.exolab.castor.xml.XMLFieldHandler() {
 189             public java.lang.Object getValue( java.lang.Object object )
 190                 throws IllegalStateException
 191             {
 192                 Alignment target = (Alignment) object;
 193                 return target.getAlignmentAnnotations();
 194             }
 195             public void setValue( java.lang.Object object, java.lang.Object value)
 196                 throws IllegalStateException, IllegalArgumentException
 197             {
 198                 try {
 199                     Alignment target = (Alignment) object;
 200                     target.addAlignmentAnnotations( (org.vamsas.objects.core.AlignmentAnnotations) value);
 201                 }
 202                 catch (java.lang.Exception ex) {
 203                     throw new IllegalStateException(ex.toString());
 204                 }
 205             }
 206             public java.lang.Object newInstance( java.lang.Object parent ) {
 207                 return new org.vamsas.objects.core.AlignmentAnnotations();
 208             }
 209         };
 210         desc.setHandler(handler);
 211         desc.setNameSpaceURI("http://www.vamsas.org");
 212         desc.setMultivalued(true);
 213         addFieldDescriptor(desc);
 214
 215         //-- validation code for: _alignmentAnnotationsList
 216         fieldValidator = new org.exolab.castor.xml.FieldValidator();
 217         fieldValidator.setMinOccurs(0);
 218         { //-- local scope
 219         }
 220         desc.setValidator(fieldValidator);
 221         //-- _treeList
 222         desc = new org.exolab.castor.xml.util.XMLFieldDescriptorImpl(org.vamsas.objects.core.Tree.class, "_treeList", "Tree", org.exolab.castor.xml.NodeType.Element);
 223         handler = new org.exolab.castor.xml.XMLFieldHandler() {
 224             public java.lang.Object getValue( java.lang.Object object )
 225                 throws IllegalStateException
 226             {
 227                 Alignment target = (Alignment) object;
 228                 return target.getTree();
 229             }
 230             public void setValue( java.lang.Object object, java.lang.Object value)
 231                 throws IllegalStateException, IllegalArgumentException
 232             {
 233                 try {
 234                     Alignment target = (Alignment) object;
 235                     target.addTree( (org.vamsas.objects.core.Tree) value);
 236                 }
 237                 catch (java.lang.Exception ex) {
 238                     throw new IllegalStateException(ex.toString());
 239                 }
 240             }
 241             public java.lang.Object newInstance( java.lang.Object parent ) {
 242                 return new org.vamsas.objects.core.Tree();
 243             }
 244         };
 245         desc.setHandler(handler);
 246         desc.setNameSpaceURI("http://www.vamsas.org");
 247         desc.setMultivalued(true);
 248         addFieldDescriptor(desc);
 249
 250         //-- validation code for: _treeList
 251         fieldValidator = new org.exolab.castor.xml.FieldValidator();
 252         fieldValidator.setMinOccurs(0);
 253         { //-- local scope
 254         }
 255         desc.setValidator(fieldValidator);
 256         //-- _alignmentSequenceList
 257         desc = new org.exolab.castor.xml.util.XMLFieldDescriptorImpl(org.vamsas.objects.core.AlignmentSequence.class, "_alignmentSequenceList", "alignmentSequence", org.exolab.castor.xml.NodeType.Element);
 258         handler = new org.exolab.castor.xml.XMLFieldHandler() {
 259             public java.lang.Object getValue( java.lang.Object object )
 260                 throws IllegalStateException
 261             {
 262                 Alignment target = (Alignment) object;
 263                 return target.getAlignmentSequence();
 264             }
 265             public void setValue( java.lang.Object object, java.lang.Object value)
 266                 throws IllegalStateException, IllegalArgumentException
 267             {
 268                 try {
 269                     Alignment target = (Alignment) object;
 270                     target.addAlignmentSequence( (org.vamsas.objects.core.AlignmentSequence) value);
 271                 }
 272                 catch (java.lang.Exception ex) {
 273                     throw new IllegalStateException(ex.toString());
 274                 }
 275             }
 276             public java.lang.Object newInstance( java.lang.Object parent ) {
 277                 return new org.vamsas.objects.core.AlignmentSequence();
 278             }
 279         };
 280         desc.setHandler(handler);
 281         desc.setNameSpaceURI("http://www.vamsas.org");
 282         desc.setRequired(true);
 283         desc.setMultivalued(true);
 284         addFieldDescriptor(desc);
 285
 286         //-- validation code for: _alignmentSequenceList
 287         fieldValidator = new org.exolab.castor.xml.FieldValidator();
 288         fieldValidator.setMinOccurs(1);
 289         { //-- local scope
 290         }
 291         desc.setValidator(fieldValidator);
 292         //-- _provenance
 293         desc = new org.exolab.castor.xml.util.XMLFieldDescriptorImpl(org.vamsas.objects.core.Provenance.class, "_provenance", "Provenance", org.exolab.castor.xml.NodeType.Element);
 294         handler = new org.exolab.castor.xml.XMLFieldHandler() {
 295             public java.lang.Object getValue( java.lang.Object object )
 296                 throws IllegalStateException
 297             {
 298                 Alignment target = (Alignment) object;
 299                 return target.getProvenance();
 300             }
 301             public void setValue( java.lang.Object object, java.lang.Object value)
 302                 throws IllegalStateException, IllegalArgumentException
 303             {
 304                 try {
 305                     Alignment target = (Alignment) object;
 306                     target.setProvenance( (org.vamsas.objects.core.Provenance) value);
 307                 }
 308                 catch (java.lang.Exception ex) {
 309                     throw new IllegalStateException(ex.toString());
 310                 }
 311             }
 312             public java.lang.Object newInstance( java.lang.Object parent ) {
 313                 return new org.vamsas.objects.core.Provenance();
 314             }
 315         };
 316         desc.setHandler(handler);
 317         desc.setNameSpaceURI("http://www.vamsas.org");
 318         desc.setRequired(true);
 319         desc.setMultivalued(false);
 320         addFieldDescriptor(desc);
 321
 322         //-- validation code for: _provenance
 323         fieldValidator = new org.exolab.castor.xml.FieldValidator();
 324         fieldValidator.setMinOccurs(1);
 325         { //-- local scope
 326         }
 327         desc.setValidator(fieldValidator);
 328     } //-- org.vamsas.objects.core.AlignmentDescriptor()
 329
 330
 331       //-----------/
 332      //- Methods -/
 333     //-----------/
 334
 335     /**
 336      * Method getAccessMode
 337      *
 338      *
 339      *
 340      * @return AccessMode
 341      */
 342     public org.exolab.castor.mapping.AccessMode getAccessMode()
 343     {
 344         return null;
 345     } //-- org.exolab.castor.mapping.AccessMode getAccessMode()
 346
 347     /**
 348      * Method getExtends
 349      *
 350      *
 351      *
 352      * @return ClassDescriptor
 353      */
 354     public org.exolab.castor.mapping.ClassDescriptor getExtends()
 355     {
 356         return null;
 357     } //-- org.exolab.castor.mapping.ClassDescriptor getExtends()
 358
 359     /**
 360      * Method getIdentity
 361      *
 362      *
 363      *
 364      * @return FieldDescriptor
 365      */
 366     public org.exolab.castor.mapping.FieldDescriptor getIdentity()
 367     {
 368         return identity;
 369     } //-- org.exolab.castor.mapping.FieldDescriptor getIdentity()
 370
 371     /**
 372      * Method getJavaClass
 373      *
 374      *
 375      *
 376      * @return Class
 377      */
 378     public java.lang.Class getJavaClass()
 379     {
 380         return org.vamsas.objects.core.Alignment.class;
 381     } //-- java.lang.Class getJavaClass()
 382
 383     /**
 384      * Method getNameSpacePrefix
 385      *
 386      *
 387      *
 388      * @return String
 389      */
 390     public java.lang.String getNameSpacePrefix()
 391     {
 392         return nsPrefix;
 393     } //-- java.lang.String getNameSpacePrefix()
 394
 395     /**
 396      * Method getNameSpaceURI
 397      *
 398      *
 399      *
 400      * @return String
 401      */
 402     public java.lang.String getNameSpaceURI()
 403     {
 404         return nsURI;
 405     } //-- java.lang.String getNameSpaceURI()
 406
 407     /**
 408      * Method getValidator
 409      *
 410      *
 411      *
 412      * @return TypeValidator
 413      */
 414     public org.exolab.castor.xml.TypeValidator getValidator()
 415     {
 416         return this;
 417     } //-- org.exolab.castor.xml.TypeValidator getValidator()
 418
 419     /**
 420      * Method getXMLName
 421      *
 422      *
 423      *
 424      * @return String
 425      */
 426     public java.lang.String getXMLName()
 427     {
 428         return xmlName;
 429     } //-- java.lang.String getXMLName()
 430
 431 }