src/org/vamsas/objects/core/AlignmentDescriptor.java

   1 /*
   2  * This class was automatically generated with
   3  * <a href="http://www.castor.org">Castor 0.9.9M2</a>, using an XML
   4  * Schema.
   5  * $Id$
   6  */
   7
   8 package org.vamsas.objects.core;
   9
  10   //---------------------------------/
  11  //- Imported classes and packages -/
  12 //---------------------------------/
  13
  14 import org.exolab.castor.mapping.AccessMode;
  15 import org.exolab.castor.xml.TypeValidator;
  16 import org.exolab.castor.xml.XMLFieldDescriptor;
  17 import org.exolab.castor.xml.validators.*;
  18
  19 /**
  20  * Class AlignmentDescriptor.
  21  *
  22  * @version $Revision$ $Date$
  23  */
  24 public class AlignmentDescriptor extends org.exolab.castor.xml.util.XMLClassDescriptorImpl {
  25
  26
  27       //--------------------------/
  28      //- Class/Member Variables -/
  29     //--------------------------/
  30
  31     /**
  32      * Field nsPrefix
  33      */
  34     private java.lang.String nsPrefix;
  35
  36     /**
  37      * Field nsURI
  38      */
  39     private java.lang.String nsURI;
  40
  41     /**
  42      * Field xmlName
  43      */
  44     private java.lang.String xmlName;
  45
  46     /**
  47      * Field identity
  48      */
  49     private org.exolab.castor.xml.XMLFieldDescriptor identity;
  50
  51
  52       //----------------/
  53      //- Constructors -/
  54     //----------------/
  55
  56     public AlignmentDescriptor()
  57      {
  58         super();
  59         nsURI = "http://www.vamsas.org";
  60         xmlName = "Alignment";
  61
  62         //-- set grouping compositor
  63         setCompositorAsSequence();
  64         org.exolab.castor.xml.util.XMLFieldDescriptorImpl  desc           = null;
  65         org.exolab.castor.mapping.FieldHandler             handler        = null;
  66         org.exolab.castor.xml.FieldValidator               fieldValidator = null;
  67         //-- initialize attribute descriptors
  68
  69         //-- initialize element descriptors
  70
  71         //-- _alignmentAnnotations
  72         desc = new org.exolab.castor.xml.util.XMLFieldDescriptorImpl(org.vamsas.objects.core.AlignmentAnnotations.class, "_alignmentAnnotations", "AlignmentAnnotations", org.exolab.castor.xml.NodeType.Element);
  73         handler = new org.exolab.castor.xml.XMLFieldHandler() {
  74             public java.lang.Object getValue( java.lang.Object object )
  75                 throws IllegalStateException
  76             {
  77                 Alignment target = (Alignment) object;
  78                 return target.getAlignmentAnnotations();
  79             }
  80             public void setValue( java.lang.Object object, java.lang.Object value)
  81                 throws IllegalStateException, IllegalArgumentException
  82             {
  83                 try {
  84                     Alignment target = (Alignment) object;
  85                     target.setAlignmentAnnotations( (org.vamsas.objects.core.AlignmentAnnotations) value);
  86                 }
  87                 catch (java.lang.Exception ex) {
  88                     throw new IllegalStateException(ex.toString());
  89                 }
  90             }
  91             public java.lang.Object newInstance( java.lang.Object parent ) {
  92                 return new org.vamsas.objects.core.AlignmentAnnotations();
  93             }
  94         };
  95         desc.setHandler(handler);
  96         desc.setNameSpaceURI("http://www.vamsas.org");
  97         desc.setMultivalued(false);
  98         addFieldDescriptor(desc);
  99
 100         //-- validation code for: _alignmentAnnotations
 101         fieldValidator = new org.exolab.castor.xml.FieldValidator();
 102         { //-- local scope
 103         }
 104         desc.setValidator(fieldValidator);
 105         //-- _treeList
 106         desc = new org.exolab.castor.xml.util.XMLFieldDescriptorImpl(org.vamsas.objects.core.Tree.class, "_treeList", "Tree", org.exolab.castor.xml.NodeType.Element);
 107         handler = new org.exolab.castor.xml.XMLFieldHandler() {
 108             public java.lang.Object getValue( java.lang.Object object )
 109                 throws IllegalStateException
 110             {
 111                 Alignment target = (Alignment) object;
 112                 return target.getTree();
 113             }
 114             public void setValue( java.lang.Object object, java.lang.Object value)
 115                 throws IllegalStateException, IllegalArgumentException
 116             {
 117                 try {
 118                     Alignment target = (Alignment) object;
 119                     target.addTree( (org.vamsas.objects.core.Tree) value);
 120                 }
 121                 catch (java.lang.Exception ex) {
 122                     throw new IllegalStateException(ex.toString());
 123                 }
 124             }
 125             public java.lang.Object newInstance( java.lang.Object parent ) {
 126                 return new org.vamsas.objects.core.Tree();
 127             }
 128         };
 129         desc.setHandler(handler);
 130         desc.setNameSpaceURI("http://www.vamsas.org");
 131         desc.setMultivalued(true);
 132         addFieldDescriptor(desc);
 133
 134         //-- validation code for: _treeList
 135         fieldValidator = new org.exolab.castor.xml.FieldValidator();
 136         fieldValidator.setMinOccurs(0);
 137         { //-- local scope
 138         }
 139         desc.setValidator(fieldValidator);
 140         //-- _alignmentSequenceList
 141         desc = new org.exolab.castor.xml.util.XMLFieldDescriptorImpl(org.vamsas.objects.core.AlignmentSequence.class, "_alignmentSequenceList", "alignmentSequence", org.exolab.castor.xml.NodeType.Element);
 142         handler = new org.exolab.castor.xml.XMLFieldHandler() {
 143             public java.lang.Object getValue( java.lang.Object object )
 144                 throws IllegalStateException
 145             {
 146                 Alignment target = (Alignment) object;
 147                 return target.getAlignmentSequence();
 148             }
 149             public void setValue( java.lang.Object object, java.lang.Object value)
 150                 throws IllegalStateException, IllegalArgumentException
 151             {
 152                 try {
 153                     Alignment target = (Alignment) object;
 154                     target.addAlignmentSequence( (org.vamsas.objects.core.AlignmentSequence) value);
 155                 }
 156                 catch (java.lang.Exception ex) {
 157                     throw new IllegalStateException(ex.toString());
 158                 }
 159             }
 160             public java.lang.Object newInstance( java.lang.Object parent ) {
 161                 return new org.vamsas.objects.core.AlignmentSequence();
 162             }
 163         };
 164         desc.setHandler(handler);
 165         desc.setNameSpaceURI("http://www.vamsas.org");
 166         desc.setRequired(true);
 167         desc.setMultivalued(true);
 168         addFieldDescriptor(desc);
 169
 170         //-- validation code for: _alignmentSequenceList
 171         fieldValidator = new org.exolab.castor.xml.FieldValidator();
 172         fieldValidator.setMinOccurs(2);
 173         { //-- local scope
 174         }
 175         desc.setValidator(fieldValidator);
 176         //-- _provenance
 177         desc = new org.exolab.castor.xml.util.XMLFieldDescriptorImpl(org.vamsas.objects.core.Provenance.class, "_provenance", "Provenance", org.exolab.castor.xml.NodeType.Element);
 178         handler = new org.exolab.castor.xml.XMLFieldHandler() {
 179             public java.lang.Object getValue( java.lang.Object object )
 180                 throws IllegalStateException
 181             {
 182                 Alignment target = (Alignment) object;
 183                 return target.getProvenance();
 184             }
 185             public void setValue( java.lang.Object object, java.lang.Object value)
 186                 throws IllegalStateException, IllegalArgumentException
 187             {
 188                 try {
 189                     Alignment target = (Alignment) object;
 190                     target.setProvenance( (org.vamsas.objects.core.Provenance) value);
 191                 }
 192                 catch (java.lang.Exception ex) {
 193                     throw new IllegalStateException(ex.toString());
 194                 }
 195             }
 196             public java.lang.Object newInstance( java.lang.Object parent ) {
 197                 return new org.vamsas.objects.core.Provenance();
 198             }
 199         };
 200         desc.setHandler(handler);
 201         desc.setNameSpaceURI("http://www.vamsas.org");
 202         desc.setRequired(true);
 203         desc.setMultivalued(false);
 204         addFieldDescriptor(desc);
 205
 206         //-- validation code for: _provenance
 207         fieldValidator = new org.exolab.castor.xml.FieldValidator();
 208         fieldValidator.setMinOccurs(1);
 209         { //-- local scope
 210         }
 211         desc.setValidator(fieldValidator);
 212     } //-- org.vamsas.objects.core.AlignmentDescriptor()
 213
 214
 215       //-----------/
 216      //- Methods -/
 217     //-----------/
 218
 219     /**
 220      * Method getAccessMode
 221      *
 222      *
 223      *
 224      * @return AccessMode
 225      */
 226     public org.exolab.castor.mapping.AccessMode getAccessMode()
 227     {
 228         return null;
 229     } //-- org.exolab.castor.mapping.AccessMode getAccessMode()
 230
 231     /**
 232      * Method getExtends
 233      *
 234      *
 235      *
 236      * @return ClassDescriptor
 237      */
 238     public org.exolab.castor.mapping.ClassDescriptor getExtends()
 239     {
 240         return null;
 241     } //-- org.exolab.castor.mapping.ClassDescriptor getExtends()
 242
 243     /**
 244      * Method getIdentity
 245      *
 246      *
 247      *
 248      * @return FieldDescriptor
 249      */
 250     public org.exolab.castor.mapping.FieldDescriptor getIdentity()
 251     {
 252         return identity;
 253     } //-- org.exolab.castor.mapping.FieldDescriptor getIdentity()
 254
 255     /**
 256      * Method getJavaClass
 257      *
 258      *
 259      *
 260      * @return Class
 261      */
 262     public java.lang.Class getJavaClass()
 263     {
 264         return org.vamsas.objects.core.Alignment.class;
 265     } //-- java.lang.Class getJavaClass()
 266
 267     /**
 268      * Method getNameSpacePrefix
 269      *
 270      *
 271      *
 272      * @return String
 273      */
 274     public java.lang.String getNameSpacePrefix()
 275     {
 276         return nsPrefix;
 277     } //-- java.lang.String getNameSpacePrefix()
 278
 279     /**
 280      * Method getNameSpaceURI
 281      *
 282      *
 283      *
 284      * @return String
 285      */
 286     public java.lang.String getNameSpaceURI()
 287     {
 288         return nsURI;
 289     } //-- java.lang.String getNameSpaceURI()
 290
 291     /**
 292      * Method getValidator
 293      *
 294      *
 295      *
 296      * @return TypeValidator
 297      */
 298     public org.exolab.castor.xml.TypeValidator getValidator()
 299     {
 300         return this;
 301     } //-- org.exolab.castor.xml.TypeValidator getValidator()
 302
 303     /**
 304      * Method getXMLName
 305      *
 306      *
 307      *
 308      * @return String
 309      */
 310     public java.lang.String getXMLName()
 311     {
 312         return xmlName;
 313     } //-- java.lang.String getXMLName()
 314
 315 }