test/jalview/io/testProps.jvprops

   1 #---JalviewX Properties File---
   2 #Fri Apr 25 09:54:25 BST 2014
   3 # Uncomment to enable debug logging
   4 # logs.Jalview.level=DEBUG
   5 BACKUPFILES_ENABLED=true
   6 BACKUPFILES_PRESET=0
   7 BACKUPFILES_SAVED=_BACKUPFILESTESTTMP%n\t6\tfalse\tfalse\t2\tfalse
   8 BACKUPFILES_CUSTOM=_BACKUPFILESTESTTMP%n\t6\tfalse\tfalse\t2\tfalse
   9 SCREEN_Y=768
  10 SCREEN_X=936
  11 SHOW_WSDISCOVERY_ERRORS=true
  12 LATEST_VERSION=2.8.0b1
  13 SHOW_CONSERVATION=true
  14 JALVIEW_RSS_WINDOW_SCREEN_WIDTH=550
  15 JAVA_CONSOLE_SCREEN_WIDTH=450
  16 LAST_DIRECTORY=/Volumes/Data/Users/jimp/Documents/testing/Jalview/examples
  17 ID_ITALICS=true
  18 SORT_ALIGNMENT=No sort
  19 SHOW_IDENTITY=true
  20 WSMENU_BYHOST=false
  21 SEQUENCE_LINKS=EMBL-EBI Search|http\://www.ebi.ac.uk/ebisearch/search.ebi?db\=allebi&query\=$SEQUENCE_ID$
  22 SHOW_FULLSCREEN=false
  23 RECENT_URL=http\://www.jalview.org/examples/exampleFile_2_7.jar
  24 FONT_NAME=SansSerif
  25 BLC_JVSUFFIX=true
  26 VERSION_CHECK=false
  27 YEAR=2011
  28 SHOW_DBREFS_TOOLTIP=true
  29 MSF_JVSUFFIX=true
  30 SCREENGEOMETRY_HEIGHT=1600
  31 JAVA_CONSOLE_SCREEN_Y=475
  32 JAVA_CONSOLE_SCREEN_X=830
  33 PFAM_JVSUFFIX=true
  34 PIR_JVSUFFIX=true
  35 STARTUP_FILE=http\://www.jalview.org/examples/exampleFile_2_3.jar
  36 JAVA_CONSOLE_SCREEN_HEIGHT=162
  37 PIR_MODELLER=false
  38 GAP_SYMBOL=-
  39 SHOW_QUALITY=true
  40 SHOW_OCCUPANCY=true
  41 SHOW_GROUP_CONSERVATION=false
  42 SHOW_JWS2_SERVICES=true
  43 SHOW_NPFEATS_TOOLTIP=true
  44 FONT_STYLE=plain
  45 ANTI_ALIAS=false
  46 SORT_BY_TREE=false
  47 RSBS_SERVICES=|Multi-Harmony|Analysis|Sequence Harmony and Multi-Relief (Brandt et al. 2010)|hseparable,gapCharacter\='-',returns\='ANNOTATION'|?tool\=jalview|http\://zeus.few.vu.nl/programs/shmrwww/index.php?tool\=jalview&groups\=$PARTITION\:min\='2',minsize\='2',sep\=' '$&ali_file\=$ALIGNMENT\:format\='FASTA',writeasfile$
  48 AUTHORFNAMES=Jim Procter, Andrew Waterhouse, Jan Engelhardt, Lauren Lui, Michele Clamp, James Cuff, Steve Searle, David Martin & Geoff Barton
  49 JALVIEW_RSS_WINDOW_SCREEN_HEIGHT=328
  50 SHOW_GROUP_CONSENSUS=false
  51 SHOW_CONSENSUS_HISTOGRAM=true
  52 SHOW_OVERVIEW=false
  53 AUTHORS=J Procter, AM Waterhouse, LM Lui, J Engelhardt, G Barton, M Clamp, S Searle
  54 FIGURE_AUTOIDWIDTH=false
  55 SCREEN_WIDTH=900
  56 ANNOTATIONCOLOUR_MIN=ffc800
  57 SHOW_STARTUP_FILE=false
  58 RECENT_FILE=examples/uniref50.fa\t/Volumes/Data/Users/jimp/Documents/testing/Jalview/examples/RF00031_folded.stk\t/Volumes/Data/Users/jimp/bs_ig_mult.out
  59 DEFAULT_FILE_FORMAT=FASTA
  60 SHOW_JAVA_CONSOLE=false
  61 VERSION=2.8b1
  62 FIGURE_USERIDWIDTH=
  63 WSMENU_BYTYPE=false
  64 DEFAULT_COLOUR=None
  65 NOQUESTIONNAIRES=true
  66 JALVIEW_NEWS_RSS_LASTMODIFIED=Apr 23, 2014 2\:53\:26 PM
  67 BUILD_DATE=01 November 2013
  68 PILEUP_JVSUFFIX=true
  69 SHOW_CONSENSUS_LOGO=false
  70 SCREENGEOMETRY_WIDTH=2560
  71 SHOW_ANNOTATIONS=true
  72 JALVIEW_RSS_WINDOW_SCREEN_Y=0
  73 USAGESTATS=false
  74 JALVIEW_RSS_WINDOW_SCREEN_X=0
  75 SHOW_UNCONSERVED=false
  76 SHOW_JVSUFFIX=true
  77 DAS_LOCAL_SOURCE=
  78 SCREEN_HEIGHT=650
  79 ANNOTATIONCOLOUR_MAX=ff0000
  80 AUTO_CALC_CONSENSUS=true
  81 FASTA_JVSUFFIX=true
  82 DAS_ACTIVE_SOURCE=uniprot\t
  83 JWS2HOSTURLS=http\://www.compbio.dundee.ac.uk/jabaws
  84 PAD_GAPS=false
  85 CLUSTAL_JVSUFFIX=true
  86 SHOW_ENFIN_SERVICES=true
  87 FONT_SIZE=10
  88 RIGHT_ALIGN_IDS=false
  89 USE_PROXY=false
  90 WRAP_ALIGNMENT=false
  91 #DAS_REGISTRY_URL=http\://www.dasregistry.org/das/ # retired 01/05/2015
  92 DAS_REGISTRY_URL=http\://www.ebi.ac.uk/das-srv/registry/das/
  93 logs.Jalview.level=DEBUG