2 * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.2)
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3 * Copyright (C) 2014 The Jalview Authors
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5 * This file is part of Jalview.
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7 * Jalview is free software: you can redistribute it and/or
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8 * modify it under the terms of the GNU General Public License
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9 * as published by the Free Software Foundation, either version 3
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10 * of the License, or (at your option) any later version.
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12 * Jalview is distributed in the hope that it will be useful, but
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13 * WITHOUT ANY WARRANTY; without even the implied warranty
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14 * of MERCHANTABILITY or FITNESS FOR A PARTICULAR
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15 * PURPOSE. See the GNU General Public License for more details.
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17 * You should have received a copy of the GNU General Public License
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18 * along with Jalview. If not, see <http://www.gnu.org/licenses/>.
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19 * The Jalview Authors are detailed in the 'AUTHORS' file.
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23 import static org.junit.Assert.*;
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24 import jalview.datamodel.AlignmentI;
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25 import jalview.datamodel.SequenceI;
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26 import jalview.ws.seqfetcher.DbSourceProxy;
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28 import java.util.List;
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30 import org.junit.Before;
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31 import org.junit.Test;
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33 public class PDBSequenceFetcherTest
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39 public void setUp() throws Exception
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41 sf = new SequenceFetcher(false);
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45 public void testRnaSeqRetrieve() throws Exception
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47 List<DbSourceProxy> sps = sf.getSourceProxy("PDB");
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48 AlignmentI response = sps.get(0).getSequenceRecords("2GIS");
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49 assertTrue(response != null);
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50 assertTrue(response.getHeight() == 1);
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51 for (SequenceI sq : response.getSequences())
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53 assertTrue("No annotation transfered to sequence.",
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54 sq.getAnnotation().length > 0);
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55 assertTrue("No PDBEntry on sequence.", sq.getPDBId().size() > 0);
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56 assertTrue("No RNA annotation on sequence.", sq.getRNA() != null);
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