webservices/compbio/ws/client/Services.java

   1 /* Copyright (c) 2009 Peter Troshin\r
   2  *  \r
   3  *  JAva Bioinformatics Analysis Web Services (JABAWS) @version: 1.0     \r
   4  * \r
   5  *  This library is free software; you can redistribute it and/or modify it under the terms of the\r
   6  *  Apache License version 2 as published by the Apache Software Foundation\r
   7  * \r
   8  *  This library is distributed in the hope that it will be useful, but WITHOUT ANY WARRANTY; without\r
   9  *  even the implied warranty of MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the Apache \r
  10  *  License for more details.\r
  11  * \r
  12  *  A copy of the license is in apache_license.txt. It is also available here:\r
  13  * @see: http://www.apache.org/licenses/LICENSE-2.0.txt\r
  14  * \r
  15  * Any republication or derived work distributed in source code form\r
  16  * must include this copyright and license notice.\r
  17  */\r
  18 \r
  19 package compbio.ws.client;\r
  20 \r
  21 import java.net.URL;\r
  22 \r
  23 import javax.xml.namespace.QName;\r
  24 import javax.xml.ws.Service;\r
  25 \r
  26 import compbio.data.msa.JABAService;\r
  27 import compbio.data.msa.MsaWS;\r
  28 import compbio.data.msa.SequenceAnnotation;\r
  29 \r
  30 /**\r
  31  * List of web services currently supported by JABAWS version 2\r
  32  * \r
  33  */\r
  34 public enum Services {\r
  35         MafftWS, MuscleWS, ClustalWS, TcoffeeWS, ProbconsWS, AAConWS, JronnWS, DisemblWS, GlobPlotWS;\r
  36 \r
  37         public static Services getService(String servName) {\r
  38                 servName = servName.trim().toLowerCase();\r
  39                 if (servName.equalsIgnoreCase(MafftWS.toString())) {\r
  40                         return MafftWS;\r
  41                 }\r
  42                 if (servName.equalsIgnoreCase(ClustalWS.toString())) {\r
  43                         return ClustalWS;\r
  44                 }\r
  45                 if (servName.equalsIgnoreCase(TcoffeeWS.toString())) {\r
  46                         return TcoffeeWS;\r
  47                 }\r
  48                 if (servName.equalsIgnoreCase(MuscleWS.toString())) {\r
  49                         return MuscleWS;\r
  50                 }\r
  51                 if (servName.equalsIgnoreCase(ProbconsWS.toString())) {\r
  52                         return ProbconsWS;\r
  53                 }\r
  54                 if (servName.equalsIgnoreCase(AAConWS.toString())) {\r
  55                         return AAConWS;\r
  56                 }\r
  57                 if (servName.equalsIgnoreCase(JronnWS.toString())) {\r
  58                         return JronnWS;\r
  59                 }\r
  60                 if (servName.equalsIgnoreCase(DisemblWS.toString())) {\r
  61                         return DisemblWS;\r
  62                 }\r
  63                 if (servName.equalsIgnoreCase(GlobPlotWS.toString())) {\r
  64                         return GlobPlotWS;\r
  65                 }\r
  66                 return null;\r
  67         }\r
  68 \r
  69         Service getService(URL url, String sqname) {\r
  70                 QName qname = new QName(sqname, this.toString());\r
  71                 return Service.create(url, qname);\r
  72         }\r
  73 \r
  74         Class<? extends JABAService> getServiceType() {\r
  75                 switch (this) {\r
  76                         // deliberate leaking\r
  77                         case AAConWS :\r
  78                         case JronnWS :\r
  79                         case DisemblWS :\r
  80                         case GlobPlotWS :\r
  81 \r
  82                                 return SequenceAnnotation.class;\r
  83 \r
  84                                 // deliberate leaking\r
  85                         case ClustalWS :\r
  86                         case MafftWS :\r
  87                         case MuscleWS :\r
  88                         case ProbconsWS :\r
  89                         case TcoffeeWS :\r
  90 \r
  91                                 return MsaWS.class;\r
  92                         default :\r
  93                                 throw new RuntimeException("Unrecognised Web Service Type "\r
  94                                                 + this + " - Should never happened!");\r
  95                 }\r
  96         }\r
  97 \r
  98         JABAService getInterface(Service service) {\r
  99                 assert service != null;\r
 100 \r
 101                 QName portName = new QName(service.getServiceName().getNamespaceURI(),\r
 102                                 this.toString() + "Port");\r
 103                 return service.getPort(portName, this.getServiceType());\r
 104         }\r
 105 }