webservices/compbio/ws/server/resource/RNAalifoldWS_schema1.xsd

   1 <?xml version="1.0" encoding="UTF-8" standalone="yes"?>
   2 <xs:schema version="1.0" targetNamespace="http://msa.data.compbio/01/01/2010/" xmlns:tns="http://msa.data.compbio/01/01/2010/" xmlns:xs="http://www.w3.org/2001/XMLSchema">
   3
   4   <xs:element name="JobSubmissionException" type="tns:JobSubmissionException"/>
   5
   6   <xs:element name="LimitExceededException" type="tns:LimitExceededException"/>
   7
   8   <xs:element name="ResultNotAvailableException" type="tns:ResultNotAvailableException"/>
   9
  10   <xs:element name="UnsupportedRuntimeException" type="tns:UnsupportedRuntimeException"/>
  11
  12   <xs:element name="WrongParameterException" type="tns:WrongParameterException"/>
  13
  14   <xs:element name="cancelJob" type="tns:cancelJob"/>
  15
  16   <xs:element name="cancelJobResponse" type="tns:cancelJobResponse"/>
  17
  18   <xs:element name="customFold" type="tns:customFold"/>
  19
  20   <xs:element name="customFoldResponse" type="tns:customFoldResponse"/>
  21
  22   <xs:element name="fold" type="tns:fold"/>
  23
  24   <xs:element name="foldResponse" type="tns:foldResponse"/>
  25
  26   <xs:element name="getJobStatus" type="tns:getJobStatus"/>
  27
  28   <xs:element name="getJobStatusResponse" type="tns:getJobStatusResponse"/>
  29
  30   <xs:element name="getLimit" type="tns:getLimit"/>
  31
  32   <xs:element name="getLimitResponse" type="tns:getLimitResponse"/>
  33
  34   <xs:element name="getLimits" type="tns:getLimits"/>
  35
  36   <xs:element name="getLimitsResponse" type="tns:getLimitsResponse"/>
  37
  38   <xs:element name="getPresets" type="tns:getPresets"/>
  39
  40   <xs:element name="getPresetsResponse" type="tns:getPresetsResponse"/>
  41
  42   <xs:element name="getResult" type="tns:getResult"/>
  43
  44   <xs:element name="getResultResponse" type="tns:getResultResponse"/>
  45
  46   <xs:element name="getRunnerOptions" type="tns:getRunnerOptions"/>
  47
  48   <xs:element name="getRunnerOptionsResponse" type="tns:getRunnerOptionsResponse"/>
  49
  50   <xs:element name="limits" type="tns:limitsManager"/>
  51
  52   <xs:element name="presetFold" type="tns:presetFold"/>
  53
  54   <xs:element name="presetFoldResponse" type="tns:presetFoldResponse"/>
  55
  56   <xs:element name="presets" type="tns:presetManager"/>
  57
  58   <xs:element name="pullExecStatistics" type="tns:pullExecStatistics"/>
  59
  60   <xs:element name="pullExecStatisticsResponse" type="tns:pullExecStatisticsResponse"/>
  61
  62   <xs:element name="runnerConfig" type="tns:runnerConfig"/>
  63
  64   <xs:complexType name="getJobStatus">
  65     <xs:sequence>
  66       <xs:element name="jobId" type="xs:string" minOccurs="0"/>
  67     </xs:sequence>
  68   </xs:complexType>
  69
  70   <xs:complexType name="getJobStatusResponse">
  71     <xs:sequence>
  72       <xs:element name="return" type="tns:jobStatus" minOccurs="0"/>
  73     </xs:sequence>
  74   </xs:complexType>
  75
  76   <xs:complexType name="getRunnerOptions">
  77     <xs:sequence/>
  78   </xs:complexType>
  79
  80   <xs:complexType name="getRunnerOptionsResponse">
  81     <xs:sequence>
  82       <xs:element name="return" type="tns:runnerConfig" minOccurs="0"/>
  83     </xs:sequence>
  84   </xs:complexType>
  85
  86   <xs:complexType name="runnerConfig">
  87     <xs:sequence>
  88       <xs:element name="options" type="tns:option" nillable="true" minOccurs="0" maxOccurs="unbounded"/>
  89       <xs:element name="parameters" type="tns:parameter" nillable="true" minOccurs="0" maxOccurs="unbounded"/>
  90       <xs:element name="prmSeparator" type="xs:string" minOccurs="0"/>
  91       <xs:element name="runnerClassName" type="xs:string"/>
  92     </xs:sequence>
  93   </xs:complexType>
  94
  95   <xs:complexType name="option">
  96     <xs:sequence>
  97       <xs:element name="description" type="xs:string"/>
  98       <xs:element name="optionNames" type="xs:string" maxOccurs="unbounded"/>
  99       <xs:element name="name" type="xs:string"/>
 100       <xs:element name="furtherDetails" type="xs:anyURI" minOccurs="0"/>
 101       <xs:element name="defaultValue" type="xs:string" minOccurs="0"/>
 102     </xs:sequence>
 103     <xs:attribute name="isRequired" type="xs:boolean" use="required"/>
 104   </xs:complexType>
 105
 106   <xs:complexType name="parameter">
 107     <xs:complexContent>
 108       <xs:extension base="tns:option">
 109         <xs:sequence>
 110           <xs:element name="possibleValues" type="xs:string" minOccurs="0" maxOccurs="unbounded"/>
 111           <xs:element name="validValue" type="tns:valueConstrain" minOccurs="0"/>
 112         </xs:sequence>
 113       </xs:extension>
 114     </xs:complexContent>
 115   </xs:complexType>
 116
 117   <xs:complexType name="valueConstrain">
 118     <xs:sequence>
 119       <xs:element name="type" type="tns:type"/>
 120       <xs:element name="max" type="xs:string" minOccurs="0"/>
 121       <xs:element name="min" type="xs:string" minOccurs="0"/>
 122     </xs:sequence>
 123   </xs:complexType>
 124
 125   <xs:complexType name="fold">
 126     <xs:sequence>
 127       <xs:element name="alignment" type="tns:alignment" minOccurs="0"/>
 128     </xs:sequence>
 129   </xs:complexType>
 130
 131   <xs:complexType name="alignment" final="extension restriction">
 132     <xs:sequence>
 133       <xs:element name="metadata" type="tns:alignmentMetadata" minOccurs="0"/>
 134       <xs:element name="sequences" type="tns:fastaSequence" nillable="true" minOccurs="0" maxOccurs="unbounded"/>
 135     </xs:sequence>
 136   </xs:complexType>
 137
 138   <xs:complexType name="alignmentMetadata">
 139     <xs:sequence>
 140       <xs:element name="program" type="tns:program" minOccurs="0"/>
 141       <xs:element name="gapchar" type="xs:unsignedShort"/>
 142     </xs:sequence>
 143   </xs:complexType>
 144
 145   <xs:complexType name="fastaSequence">
 146     <xs:sequence>
 147       <xs:element name="id" type="xs:string" minOccurs="0"/>
 148       <xs:element name="sequence" type="xs:string" minOccurs="0"/>
 149     </xs:sequence>
 150   </xs:complexType>
 151
 152   <xs:complexType name="foldResponse">
 153     <xs:sequence>
 154       <xs:element name="return" type="xs:string" minOccurs="0"/>
 155     </xs:sequence>
 156   </xs:complexType>
 157
 158   <xs:complexType name="UnsupportedRuntimeException">
 159     <xs:sequence>
 160       <xs:element name="message" type="xs:string" minOccurs="0"/>
 161     </xs:sequence>
 162   </xs:complexType>
 163
 164   <xs:complexType name="LimitExceededException">
 165     <xs:sequence>
 166       <xs:element name="actualNumberofSequences" type="xs:int"/>
 167       <xs:element name="message" type="xs:string" minOccurs="0"/>
 168       <xs:element name="numberOfSequencesAllowed" type="xs:int"/>
 169       <xs:element name="sequenceLenghtActual" type="xs:int"/>
 170       <xs:element name="sequenceLenghtAllowed" type="xs:int"/>
 171     </xs:sequence>
 172   </xs:complexType>
 173
 174   <xs:complexType name="JobSubmissionException">
 175     <xs:sequence>
 176       <xs:element name="message" type="xs:string" minOccurs="0"/>
 177     </xs:sequence>
 178   </xs:complexType>
 179
 180   <xs:complexType name="getResult">
 181     <xs:sequence>
 182       <xs:element name="jobId" type="xs:string" minOccurs="0"/>
 183     </xs:sequence>
 184   </xs:complexType>
 185
 186   <xs:complexType name="getResultResponse">
 187     <xs:sequence>
 188       <xs:element name="return" type="tns:rnAstruct" minOccurs="0"/>
 189     </xs:sequence>
 190   </xs:complexType>
 191
 192   <xs:complexType name="rnAstruct" final="extension restriction">
 193     <xs:sequence>
 194       <xs:element name="sequence" type="xs:string" minOccurs="0"/>
 195       <xs:element name="structure" type="xs:string" minOccurs="0"/>
 196       <xs:element name="minEnergy" type="xs:float" minOccurs="0"/>
 197       <xs:element name="energySum1" type="xs:float" minOccurs="0"/>
 198       <xs:element name="energySum2" type="xs:float" minOccurs="0"/>
 199     </xs:sequence>
 200   </xs:complexType>
 201
 202   <xs:complexType name="ResultNotAvailableException">
 203     <xs:sequence>
 204       <xs:element name="message" type="xs:string" minOccurs="0"/>
 205     </xs:sequence>
 206   </xs:complexType>
 207
 208   <xs:complexType name="customFold">
 209     <xs:sequence>
 210       <xs:element name="alignment" type="tns:alignment" minOccurs="0"/>
 211       <xs:element name="options" type="tns:option" minOccurs="0" maxOccurs="unbounded"/>
 212     </xs:sequence>
 213   </xs:complexType>
 214
 215   <xs:complexType name="customFoldResponse">
 216     <xs:sequence>
 217       <xs:element name="return" type="xs:string" minOccurs="0"/>
 218     </xs:sequence>
 219   </xs:complexType>
 220
 221   <xs:complexType name="WrongParameterException">
 222     <xs:sequence>
 223       <xs:element name="message" type="xs:string" minOccurs="0"/>
 224     </xs:sequence>
 225   </xs:complexType>
 226
 227   <xs:complexType name="getLimits">
 228     <xs:sequence/>
 229   </xs:complexType>
 230
 231   <xs:complexType name="getLimitsResponse">
 232     <xs:sequence>
 233       <xs:element name="return" type="tns:limitsManager" minOccurs="0"/>
 234     </xs:sequence>
 235   </xs:complexType>
 236
 237   <xs:complexType name="limitsManager">
 238     <xs:sequence>
 239       <xs:element name="runnerClassName" type="xs:string" minOccurs="0"/>
 240       <xs:element name="limit" type="tns:limit" nillable="true" minOccurs="0" maxOccurs="unbounded"/>
 241     </xs:sequence>
 242   </xs:complexType>
 243
 244   <xs:complexType name="limit">
 245     <xs:sequence>
 246       <xs:element name="preset" type="xs:string" minOccurs="0"/>
 247       <xs:element name="seqNumber" type="xs:int"/>
 248       <xs:element name="seqLength" type="xs:int"/>
 249     </xs:sequence>
 250     <xs:attribute name="isDefault" type="xs:boolean" use="required"/>
 251   </xs:complexType>
 252
 253   <xs:complexType name="getPresets">
 254     <xs:sequence/>
 255   </xs:complexType>
 256
 257   <xs:complexType name="getPresetsResponse">
 258     <xs:sequence>
 259       <xs:element name="return" type="tns:presetManager" minOccurs="0"/>
 260     </xs:sequence>
 261   </xs:complexType>
 262
 263   <xs:complexType name="presetManager">
 264     <xs:sequence>
 265       <xs:element name="runnerClassName" type="xs:string"/>
 266       <xs:element name="preset" type="tns:preset" maxOccurs="unbounded"/>
 267     </xs:sequence>
 268   </xs:complexType>
 269
 270   <xs:complexType name="preset">
 271     <xs:sequence>
 272       <xs:element name="name" type="xs:string"/>
 273       <xs:element name="description" type="xs:string" minOccurs="0"/>
 274       <xs:element name="optlist" minOccurs="0">
 275         <xs:complexType>
 276           <xs:sequence>
 277             <xs:element name="option" type="xs:string" maxOccurs="unbounded"/>
 278           </xs:sequence>
 279         </xs:complexType>
 280       </xs:element>
 281     </xs:sequence>
 282   </xs:complexType>
 283
 284   <xs:complexType name="getLimit">
 285     <xs:sequence>
 286       <xs:element name="presetName" type="xs:string" minOccurs="0"/>
 287     </xs:sequence>
 288   </xs:complexType>
 289
 290   <xs:complexType name="getLimitResponse">
 291     <xs:sequence>
 292       <xs:element name="return" type="tns:limit" minOccurs="0"/>
 293     </xs:sequence>
 294   </xs:complexType>
 295
 296   <xs:complexType name="cancelJob">
 297     <xs:sequence>
 298       <xs:element name="jobId" type="xs:string" minOccurs="0"/>
 299     </xs:sequence>
 300   </xs:complexType>
 301
 302   <xs:complexType name="cancelJobResponse">
 303     <xs:sequence>
 304       <xs:element name="return" type="xs:boolean"/>
 305     </xs:sequence>
 306   </xs:complexType>
 307
 308   <xs:complexType name="pullExecStatistics">
 309     <xs:sequence>
 310       <xs:element name="jobId" type="xs:string" minOccurs="0"/>
 311       <xs:element name="position" type="xs:long"/>
 312     </xs:sequence>
 313   </xs:complexType>
 314
 315   <xs:complexType name="pullExecStatisticsResponse">
 316     <xs:sequence>
 317       <xs:element name="return" type="tns:chunkHolder" minOccurs="0"/>
 318     </xs:sequence>
 319   </xs:complexType>
 320
 321   <xs:complexType name="chunkHolder">
 322     <xs:sequence>
 323       <xs:element name="chunk" type="xs:string" minOccurs="0"/>
 324       <xs:element name="position" type="xs:long"/>
 325     </xs:sequence>
 326   </xs:complexType>
 327
 328   <xs:complexType name="presetFold">
 329     <xs:sequence>
 330       <xs:element name="alignment" type="tns:alignment" minOccurs="0"/>
 331       <xs:element name="preset" type="tns:preset" minOccurs="0"/>
 332     </xs:sequence>
 333   </xs:complexType>
 334
 335   <xs:complexType name="presetFoldResponse">
 336     <xs:sequence>
 337       <xs:element name="return" type="xs:string" minOccurs="0"/>
 338     </xs:sequence>
 339   </xs:complexType>
 340
 341   <xs:simpleType name="jobStatus">
 342     <xs:restriction base="xs:string">
 343       <xs:enumeration value="PENDING"/>
 344       <xs:enumeration value="RUNNING"/>
 345       <xs:enumeration value="CANCELLED"/>
 346       <xs:enumeration value="FINISHED"/>
 347       <xs:enumeration value="FAILED"/>
 348       <xs:enumeration value="UNDEFINED"/>
 349       <xs:enumeration value="STARTED"/>
 350       <xs:enumeration value="SUBMITTED"/>
 351       <xs:enumeration value="COLLECTED"/>
 352     </xs:restriction>
 353   </xs:simpleType>
 354
 355   <xs:simpleType name="type">
 356     <xs:restriction base="xs:string">
 357       <xs:enumeration value="Integer"/>
 358       <xs:enumeration value="Float"/>
 359     </xs:restriction>
 360   </xs:simpleType>
 361
 362   <xs:simpleType name="program">
 363     <xs:restriction base="xs:string">
 364       <xs:enumeration value="CLUSTAL"/>
 365       <xs:enumeration value="MAFFT"/>
 366       <xs:enumeration value="MUSCLE"/>
 367       <xs:enumeration value="Tcoffee"/>
 368       <xs:enumeration value="Probcons"/>
 369     </xs:restriction>
 370   </xs:simpleType>
 371 </xs:schema>
 372