website/ReportSequenceProtein.jsp

   1 <%@page import="java.util.ArrayList"%>
   2 <%@ taglib uri="http://java.sun.com/jsp/jstl/core" prefix="c"%>
   3 <%@ taglib uri="http://java.sun.com/jsp/jstl/functions" prefix="fn"%>
   4 <%@ taglib uri="http://java.sun.com/jsp/jstl/fmt" prefix="fmt"%>
   5 <%@ taglib uri="http://displaytag.sf.net" prefix="dt"%>
   6
   7 <c:choose>
   8         <c:when test="${search == 'Search counter'}">
   9                 <h3>Dundee ProteoCache query results for jobs more than ${counter} </h3>
  10         </c:when>
  11         <c:otherwise>
  12                 <h3>Dundee ProteoCache query results</h3>
  13         </c:otherwise>
  14 </c:choose>
  15 <h3>Time execution: ${timeExecution} ms</h3>
  16 <c:choose>
  17
  18 <c:when test="${results == null}">
  19         <h3>No jobs for sequence ${prot} </h3>
  20 </c:when>
  21 <c:otherwise>
  22
  23 <table border="1" style="border-collapse: collapse; white-space: nowrap">
  24         <c:choose>
  25
  26                 <c:when test="${search == 'Search counter'}">
  27                         <thead>
  28                                 <tr>
  29                                         <th style="text-align: centre">Number of jobs</th>
  30                                         <th style="text-align: left">Protein</th>
  31                                 </tr>
  32                         </thead>
  33                         <tbody>
  34                                 <c:forEach items="${results}" var="res">
  35                                         <tr>
  36                                                 <td>${res.totalId}</td>
  37                                                 <td style="text-align: left; border-buttom: dotted; font-family: monospace">
  38                                                         <a title="Click to view all jobs" href="ServletSequenceProtein?prot=${res.prot}&protein=whole&Search=Search+sequence&counterJob=${counter}">${res.prot}</a>
  39                                                 </td>
  40                                         </tr>
  41                                 </c:forEach>
  42                 </c:when>
  43
  44                 <c:otherwise>
  45                         <thead>
  46                                 <tr style="text-align: centre">
  47                                         <th>Job ID</th>
  48                                         <th>annotation</th>
  49                                         <th>Sequence</th>
  50                                 </tr>
  51                         </thead>
  52                         <tbody>
  53                                 <c:forEach items="${results}" var="res" varStatus="status">
  54                                         <c:set var="ann" value="${res.predictions}"/>
  55                                         <tr style="border-bottom: double">
  56                                                 <th rowspan="${ann.mapsize + 2}"><a title="Click to view the job log" href="ServletLogInfo?IdJob=${res.id}">${res.id}</a></th>
  57                                         </tr>
  58                                         <tr style="border-bottom: double ">
  59                                                 <td style="text-align: center; font-weight: bold; font-family: monospace" >Protein Sequence</td>
  60                                                 <c:if test="${flag == 'whole'}">
  61                                                         <td style="text-align: left; border-buttom: dotted; font-family: monospace"><c:out value="${res.prot}" /></td>
  62                                                 </c:if>
  63                                                 <c:if test="${flag == 'part'}">
  64                                                         <td
  65                                                                 style="text-align: left; border-buttom: dotted; font-family: monospace">
  66                                                                 <c:forEach items="${res.subProt}" var="seq">
  67                                                                         <c:choose>
  68                                                                                 <c:when test="${fn:contains(seq, prot)}">
  69                                                                                         <span style="background-color: blue">${seq}</span>
  70                                                                                 </c:when>
  71                                                                                 <c:otherwise>${seq}</c:otherwise>
  72                                                                         </c:choose>
  73                                                                 </c:forEach>
  74                                                         </td>
  75                                                 </c:if>
  76                                         </tr>
  77                                         <c:forEach items="${ann.predictions}" var="seq" varStatus="status">
  78                                                 <tr>
  79                                                         <td style="text-align: center; font-weight: bold; font-family: monospace"><c:out value="${seq.key}"/></td>
  80                                                         <td style="text-align: left; border-buttom: dotted; font-family: monospace"><c:out value="${seq.value}"/></td>
  81                                                 </tr>
  82                                         </c:forEach>
  83                                 </c:forEach>
  84                 </c:otherwise>
  85         </c:choose>
  86         </tbody>
  87 </table>
  88 </c:otherwise>
  89
  90 </c:choose>