8fa123c0254f4535602c9ed57e40251c9ae1babb
[jabaws.git] / website / dm_javadoc / compbio / data / msa / RegistryWS.html
1 <!DOCTYPE HTML PUBLIC "-//W3C//DTD HTML 4.01 Transitional//EN" "http://www.w3.org/TR/html4/loose.dtd">\r
2 <!--NewPage-->\r
3 <HTML>\r
4 <HEAD>\r
5 <!-- Generated by javadoc (build 1.6.0_24) on Wed Dec 07 12:08:24 GMT 2011 -->\r
6 <TITLE>\r
7 RegistryWS\r
8 </TITLE>\r
9 \r
10 <META NAME="date" CONTENT="2011-12-07">\r
11 \r
12 <LINK REL ="stylesheet" TYPE="text/css" HREF="../../../stylesheet.css" TITLE="Style">\r
13 \r
14 <SCRIPT type="text/javascript">\r
15 function windowTitle()\r
16 {\r
17     if (location.href.indexOf('is-external=true') == -1) {\r
18         parent.document.title="RegistryWS";\r
19     }\r
20 }\r
21 </SCRIPT>\r
22 <NOSCRIPT>\r
23 </NOSCRIPT>\r
24 \r
25 </HEAD>\r
26 \r
27 <BODY BGCOLOR="white" onload="windowTitle();">\r
28 <HR>\r
29 \r
30 \r
31 <!-- ========= START OF TOP NAVBAR ======= -->\r
32 <A NAME="navbar_top"><!-- --></A>\r
33 <A HREF="#skip-navbar_top" title="Skip navigation links"></A>\r
34 <TABLE BORDER="0" WIDTH="100%" CELLPADDING="1" CELLSPACING="0" SUMMARY="">\r
35 <TR>\r
36 <TD COLSPAN=2 BGCOLOR="#EEEEFF" CLASS="NavBarCell1">\r
37 <A NAME="navbar_top_firstrow"><!-- --></A>\r
38 <TABLE BORDER="0" CELLPADDING="0" CELLSPACING="3" SUMMARY="">\r
39   <TR ALIGN="center" VALIGN="top">\r
40   <TD BGCOLOR="#EEEEFF" CLASS="NavBarCell1">    <A HREF="../../../overview-summary.html"><FONT CLASS="NavBarFont1"><B>Overview</B></FONT></A>&nbsp;</TD>\r
41   <TD BGCOLOR="#EEEEFF" CLASS="NavBarCell1">    <A HREF="package-summary.html"><FONT CLASS="NavBarFont1"><B>Package</B></FONT></A>&nbsp;</TD>\r
42   <TD BGCOLOR="#FFFFFF" CLASS="NavBarCell1Rev"> &nbsp;<FONT CLASS="NavBarFont1Rev"><B>Class</B></FONT>&nbsp;</TD>\r
43   <TD BGCOLOR="#EEEEFF" CLASS="NavBarCell1">    <A HREF="class-use/RegistryWS.html"><FONT CLASS="NavBarFont1"><B>Use</B></FONT></A>&nbsp;</TD>\r
44   <TD BGCOLOR="#EEEEFF" CLASS="NavBarCell1">    <A HREF="package-tree.html"><FONT CLASS="NavBarFont1"><B>Tree</B></FONT></A>&nbsp;</TD>\r
45   <TD BGCOLOR="#EEEEFF" CLASS="NavBarCell1">    <A HREF="../../../deprecated-list.html"><FONT CLASS="NavBarFont1"><B>Deprecated</B></FONT></A>&nbsp;</TD>\r
46   <TD BGCOLOR="#EEEEFF" CLASS="NavBarCell1">    <A HREF="../../../index-files/index-1.html"><FONT CLASS="NavBarFont1"><B>Index</B></FONT></A>&nbsp;</TD>\r
47   <TD BGCOLOR="#EEEEFF" CLASS="NavBarCell1">    <A HREF="../../../help-doc.html"><FONT CLASS="NavBarFont1"><B>Help</B></FONT></A>&nbsp;</TD>\r
48   </TR>\r
49 </TABLE>\r
50 </TD>\r
51 <TD ALIGN="right" VALIGN="top" ROWSPAN=3><EM>\r
52 </EM>\r
53 </TD>\r
54 </TR>\r
55 \r
56 <TR>\r
57 <TD BGCOLOR="white" CLASS="NavBarCell2"><FONT SIZE="-2">\r
58 &nbsp;<A HREF="../../../compbio/data/msa/MsaWS.html" title="interface in compbio.data.msa"><B>PREV CLASS</B></A>&nbsp;\r
59 &nbsp;<A HREF="../../../compbio/data/msa/SequenceAnnotation.html" title="interface in compbio.data.msa"><B>NEXT CLASS</B></A></FONT></TD>\r
60 <TD BGCOLOR="white" CLASS="NavBarCell2"><FONT SIZE="-2">\r
61   <A HREF="../../../index.html?compbio/data/msa/RegistryWS.html" target="_top"><B>FRAMES</B></A>  &nbsp;\r
62 &nbsp;<A HREF="RegistryWS.html" target="_top"><B>NO FRAMES</B></A>  &nbsp;\r
63 &nbsp;<SCRIPT type="text/javascript">\r
64   <!--\r
65   if(window==top) {\r
66     document.writeln('<A HREF="../../../allclasses-noframe.html"><B>All Classes</B></A>');\r
67   }\r
68   //-->\r
69 </SCRIPT>\r
70 <NOSCRIPT>\r
71   <A HREF="../../../allclasses-noframe.html"><B>All Classes</B></A>\r
72 </NOSCRIPT>\r
73 \r
74 \r
75 </FONT></TD>\r
76 </TR>\r
77 <TR>\r
78 <TD VALIGN="top" CLASS="NavBarCell3"><FONT SIZE="-2">\r
79   SUMMARY:&nbsp;NESTED&nbsp;|&nbsp;FIELD&nbsp;|&nbsp;CONSTR&nbsp;|&nbsp;<A HREF="#method_summary">METHOD</A></FONT></TD>\r
80 <TD VALIGN="top" CLASS="NavBarCell3"><FONT SIZE="-2">\r
81 DETAIL:&nbsp;FIELD&nbsp;|&nbsp;CONSTR&nbsp;|&nbsp;<A HREF="#method_detail">METHOD</A></FONT></TD>\r
82 </TR>\r
83 </TABLE>\r
84 <A NAME="skip-navbar_top"></A>\r
85 <!-- ========= END OF TOP NAVBAR ========= -->\r
86 \r
87 <HR>\r
88 <!-- ======== START OF CLASS DATA ======== -->\r
89 <H2>\r
90 <FONT SIZE="-1">\r
91 compbio.data.msa</FONT>\r
92 <BR>\r
93 Interface RegistryWS</H2>\r
94 <DL>\r
95 <DT><B>All Superinterfaces:</B> <DD><A HREF="../../../compbio/data/msa/JABAService.html" title="interface in compbio.data.msa">JABAService</A></DD>\r
96 </DL>\r
97 <HR>\r
98 <DL>\r
99 <DT><PRE>public interface <B>RegistryWS</B><DT>extends <A HREF="../../../compbio/data/msa/JABAService.html" title="interface in compbio.data.msa">JABAService</A></DL>\r
100 </PRE>\r
101 \r
102 <P>\r
103 JABAWS services registry\r
104 <P>\r
105 \r
106 <P>\r
107 <DL>\r
108 <DT><B>Version:</B></DT>\r
109   <DD>1.0 June 2011</DD>\r
110 <DT><B>Author:</B></DT>\r
111   <DD>pvtroshin</DD>\r
112 </DL>\r
113 <HR>\r
114 \r
115 <P>\r
116 <!-- =========== FIELD SUMMARY =========== -->\r
117 \r
118 <A NAME="field_summary"><!-- --></A>\r
119 <TABLE BORDER="1" WIDTH="100%" CELLPADDING="3" CELLSPACING="0" SUMMARY="">\r
120 <TR BGCOLOR="#CCCCFF" CLASS="TableHeadingColor">\r
121 <TH ALIGN="left" COLSPAN="2"><FONT SIZE="+2">\r
122 <B>Field Summary</B></FONT></TH>\r
123 </TR>\r
124 </TABLE>\r
125 &nbsp;<A NAME="fields_inherited_from_class_compbio.data.msa.JABAService"><!-- --></A>\r
126 <TABLE BORDER="1" WIDTH="100%" CELLPADDING="3" CELLSPACING="0" SUMMARY="">\r
127 <TR BGCOLOR="#EEEEFF" CLASS="TableSubHeadingColor">\r
128 <TH ALIGN="left"><B>Fields inherited from interface compbio.data.msa.<A HREF="../../../compbio/data/msa/JABAService.html" title="interface in compbio.data.msa">JABAService</A></B></TH>\r
129 </TR>\r
130 <TR BGCOLOR="white" CLASS="TableRowColor">\r
131 <TD><CODE><A HREF="../../../compbio/data/msa/JABAService.html#SERVICE_NAMESPACE">SERVICE_NAMESPACE</A>, <A HREF="../../../compbio/data/msa/JABAService.html#V2_SERVICE_NAMESPACE">V2_SERVICE_NAMESPACE</A></CODE></TD>\r
132 </TR>\r
133 </TABLE>\r
134 &nbsp;\r
135 <!-- ========== METHOD SUMMARY =========== -->\r
136 \r
137 <A NAME="method_summary"><!-- --></A>\r
138 <TABLE BORDER="1" WIDTH="100%" CELLPADDING="3" CELLSPACING="0" SUMMARY="">\r
139 <TR BGCOLOR="#CCCCFF" CLASS="TableHeadingColor">\r
140 <TH ALIGN="left" COLSPAN="2"><FONT SIZE="+2">\r
141 <B>Method Summary</B></FONT></TH>\r
142 </TR>\r
143 <TR BGCOLOR="white" CLASS="TableRowColor">\r
144 <TD ALIGN="right" VALIGN="top" WIDTH="1%"><FONT SIZE="-1">\r
145 <CODE>&nbsp;int</CODE></FONT></TD>\r
146 <TD><CODE><B><A HREF="../../../compbio/data/msa/RegistryWS.html#getLastTested(compbio.ws.client.Services)">getLastTested</A></B>(<A HREF="../../../compbio/ws/client/Services.html" title="enum in compbio.ws.client">Services</A>&nbsp;service)</CODE>\r
147 \r
148 <BR>\r
149 &nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;Number of seconds since the last test.</TD>\r
150 </TR>\r
151 <TR BGCOLOR="white" CLASS="TableRowColor">\r
152 <TD ALIGN="right" VALIGN="top" WIDTH="1%"><FONT SIZE="-1">\r
153 <CODE>&nbsp;java.util.Date</CODE></FONT></TD>\r
154 <TD><CODE><B><A HREF="../../../compbio/data/msa/RegistryWS.html#getLastTestedOn(compbio.ws.client.Services)">getLastTestedOn</A></B>(<A HREF="../../../compbio/ws/client/Services.html" title="enum in compbio.ws.client">Services</A>&nbsp;service)</CODE>\r
155 \r
156 <BR>\r
157 &nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;The date and time the service has been verified to work last time</TD>\r
158 </TR>\r
159 <TR BGCOLOR="white" CLASS="TableRowColor">\r
160 <TD ALIGN="right" VALIGN="top" WIDTH="1%"><FONT SIZE="-1">\r
161 <CODE>&nbsp;java.util.Set&lt;<A HREF="../../../compbio/data/msa/Category.html" title="class in compbio.data.msa">Category</A>&gt;</CODE></FONT></TD>\r
162 <TD><CODE><B><A HREF="../../../compbio/data/msa/RegistryWS.html#getServiceCategories()">getServiceCategories</A></B>()</CODE>\r
163 \r
164 <BR>\r
165 &nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;Gets the list of services per category.</TD>\r
166 </TR>\r
167 <TR BGCOLOR="white" CLASS="TableRowColor">\r
168 <TD ALIGN="right" VALIGN="top" WIDTH="1%"><FONT SIZE="-1">\r
169 <CODE>&nbsp;java.lang.String</CODE></FONT></TD>\r
170 <TD><CODE><B><A HREF="../../../compbio/data/msa/RegistryWS.html#getServiceDescription(compbio.ws.client.Services)">getServiceDescription</A></B>(<A HREF="../../../compbio/ws/client/Services.html" title="enum in compbio.ws.client">Services</A>&nbsp;service)</CODE>\r
171 \r
172 <BR>\r
173 &nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;Gives the description of the service.</TD>\r
174 </TR>\r
175 <TR BGCOLOR="white" CLASS="TableRowColor">\r
176 <TD ALIGN="right" VALIGN="top" WIDTH="1%"><FONT SIZE="-1">\r
177 <CODE>&nbsp;java.util.Set&lt;<A HREF="../../../compbio/ws/client/Services.html" title="enum in compbio.ws.client">Services</A>&gt;</CODE></FONT></TD>\r
178 <TD><CODE><B><A HREF="../../../compbio/data/msa/RegistryWS.html#getSupportedServices()">getSupportedServices</A></B>()</CODE>\r
179 \r
180 <BR>\r
181 &nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;List of services that are functioning on the server.</TD>\r
182 </TR>\r
183 <TR BGCOLOR="white" CLASS="TableRowColor">\r
184 <TD ALIGN="right" VALIGN="top" WIDTH="1%"><FONT SIZE="-1">\r
185 <CODE>&nbsp;boolean</CODE></FONT></TD>\r
186 <TD><CODE><B><A HREF="../../../compbio/data/msa/RegistryWS.html#isOperating(compbio.ws.client.Services)">isOperating</A></B>(<A HREF="../../../compbio/ws/client/Services.html" title="enum in compbio.ws.client">Services</A>&nbsp;service)</CODE>\r
187 \r
188 <BR>\r
189 &nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;Check whether a particular web service is working on this server</TD>\r
190 </TR>\r
191 <TR BGCOLOR="white" CLASS="TableRowColor">\r
192 <TD ALIGN="right" VALIGN="top" WIDTH="1%"><FONT SIZE="-1">\r
193 <CODE>&nbsp;java.lang.String</CODE></FONT></TD>\r
194 <TD><CODE><B><A HREF="../../../compbio/data/msa/RegistryWS.html#testAllServices()">testAllServices</A></B>()</CODE>\r
195 \r
196 <BR>\r
197 &nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;Test all JABAWS services on the server</TD>\r
198 </TR>\r
199 <TR BGCOLOR="white" CLASS="TableRowColor">\r
200 <TD ALIGN="right" VALIGN="top" WIDTH="1%"><FONT SIZE="-1">\r
201 <CODE>&nbsp;java.lang.String</CODE></FONT></TD>\r
202 <TD><CODE><B><A HREF="../../../compbio/data/msa/RegistryWS.html#testService(compbio.ws.client.Services)">testService</A></B>(<A HREF="../../../compbio/ws/client/Services.html" title="enum in compbio.ws.client">Services</A>&nbsp;service)</CODE>\r
203 \r
204 <BR>\r
205 &nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;Test a particular service</TD>\r
206 </TR>\r
207 </TABLE>\r
208 &nbsp;\r
209 <P>\r
210 \r
211 <!-- ============ METHOD DETAIL ========== -->\r
212 \r
213 <A NAME="method_detail"><!-- --></A>\r
214 <TABLE BORDER="1" WIDTH="100%" CELLPADDING="3" CELLSPACING="0" SUMMARY="">\r
215 <TR BGCOLOR="#CCCCFF" CLASS="TableHeadingColor">\r
216 <TH ALIGN="left" COLSPAN="1"><FONT SIZE="+2">\r
217 <B>Method Detail</B></FONT></TH>\r
218 </TR>\r
219 </TABLE>\r
220 \r
221 <A NAME="getSupportedServices()"><!-- --></A><H3>\r
222 getSupportedServices</H3>\r
223 <PRE>\r
224 java.util.Set&lt;<A HREF="../../../compbio/ws/client/Services.html" title="enum in compbio.ws.client">Services</A>&gt; <B>getSupportedServices</B>()</PRE>\r
225 <DL>\r
226 <DD>List of services that are functioning on the server. This function
227  returns the results of testing performed some time ago by
228  <A HREF="../../../compbio/data/msa/RegistryWS.html#testAllServices()"><CODE>testAllServices()</CODE></A> or <A HREF="../../../compbio/data/msa/RegistryWS.html#testService(compbio.ws.client.Services)"><CODE>testService(Services)</CODE></A> methods. The
229  time of last check can be obtained from
230  <A HREF="../../../compbio/data/msa/RegistryWS.html#getLastTestedOn(compbio.ws.client.Services)"><CODE>getLastTestedOn(Services)</CODE></A> method\r
231 <P>\r
232 <DD><DL>\r
233 </DL>\r
234 </DD>\r
235 <DD><DL>\r
236 \r
237 <DT><B>Returns:</B><DD>the Set of Services which are functioning on the server<DT><B>See Also:</B><DD><A HREF="../../../compbio/data/msa/RegistryWS.html#testAllServices()"><CODE>testAllServices()</CODE></A></DL>\r
238 </DD>\r
239 </DL>\r
240 <HR>\r
241 \r
242 <A NAME="getLastTested(compbio.ws.client.Services)"><!-- --></A><H3>\r
243 getLastTested</H3>\r
244 <PRE>\r
245 int <B>getLastTested</B>(<A HREF="../../../compbio/ws/client/Services.html" title="enum in compbio.ws.client">Services</A>&nbsp;service)</PRE>\r
246 <DL>\r
247 <DD>Number of seconds since the last test. Returns 0 if the service was not
248  tested or tested less then a one second ago.\r
249 <P>\r
250 <DD><DL>\r
251 </DL>\r
252 </DD>\r
253 <DD><DL>\r
254 <DT><B>Parameters:</B><DD><CODE>service</CODE> - \r
255 <DT><B>Returns:</B><DD>when last time tested</DL>\r
256 </DD>\r
257 </DL>\r
258 <HR>\r
259 \r
260 <A NAME="getLastTestedOn(compbio.ws.client.Services)"><!-- --></A><H3>\r
261 getLastTestedOn</H3>\r
262 <PRE>\r
263 java.util.Date <B>getLastTestedOn</B>(<A HREF="../../../compbio/ws/client/Services.html" title="enum in compbio.ws.client">Services</A>&nbsp;service)</PRE>\r
264 <DL>\r
265 <DD>The date and time the service has been verified to work last time\r
266 <P>\r
267 <DD><DL>\r
268 </DL>\r
269 </DD>\r
270 <DD><DL>\r
271 <DT><B>Parameters:</B><DD><CODE>service</CODE> - \r
272 <DT><B>Returns:</B><DD>the Date and time on which the service was last tested</DL>\r
273 </DD>\r
274 </DL>\r
275 <HR>\r
276 \r
277 <A NAME="testAllServices()"><!-- --></A><H3>\r
278 testAllServices</H3>\r
279 <PRE>\r
280 java.lang.String <B>testAllServices</B>()</PRE>\r
281 <DL>\r
282 <DD>Test all JABAWS services on the server\r
283 <P>\r
284 <DD><DL>\r
285 </DL>\r
286 </DD>\r
287 <DD><DL>\r
288 \r
289 <DT><B>Returns:</B><DD>the test log</DL>\r
290 </DD>\r
291 </DL>\r
292 <HR>\r
293 \r
294 <A NAME="testService(compbio.ws.client.Services)"><!-- --></A><H3>\r
295 testService</H3>\r
296 <PRE>\r
297 java.lang.String <B>testService</B>(<A HREF="../../../compbio/ws/client/Services.html" title="enum in compbio.ws.client">Services</A>&nbsp;service)</PRE>\r
298 <DL>\r
299 <DD>Test a particular service\r
300 <P>\r
301 <DD><DL>\r
302 </DL>\r
303 </DD>\r
304 <DD><DL>\r
305 <DT><B>Parameters:</B><DD><CODE>service</CODE> - \r
306 <DT><B>Returns:</B><DD>the testing log</DL>\r
307 </DD>\r
308 </DL>\r
309 <HR>\r
310 \r
311 <A NAME="isOperating(compbio.ws.client.Services)"><!-- --></A><H3>\r
312 isOperating</H3>\r
313 <PRE>\r
314 boolean <B>isOperating</B>(<A HREF="../../../compbio/ws/client/Services.html" title="enum in compbio.ws.client">Services</A>&nbsp;service)</PRE>\r
315 <DL>\r
316 <DD>Check whether a particular web service is working on this server\r
317 <P>\r
318 <DD><DL>\r
319 </DL>\r
320 </DD>\r
321 <DD><DL>\r
322 <DT><B>Parameters:</B><DD><CODE>service</CODE> - \r
323 <DT><B>Returns:</B><DD>true if the service was functioning in time of last testing.</DL>\r
324 </DD>\r
325 </DL>\r
326 <HR>\r
327 \r
328 <A NAME="getServiceDescription(compbio.ws.client.Services)"><!-- --></A><H3>\r
329 getServiceDescription</H3>\r
330 <PRE>\r
331 java.lang.String <B>getServiceDescription</B>(<A HREF="../../../compbio/ws/client/Services.html" title="enum in compbio.ws.client">Services</A>&nbsp;service)</PRE>\r
332 <DL>\r
333 <DD>Gives the description of the service.\r
334 <P>\r
335 <DD><DL>\r
336 </DL>\r
337 </DD>\r
338 <DD><DL>\r
339 <DT><B>Parameters:</B><DD><CODE>service</CODE> - \r
340 <DT><B>Returns:</B><DD>String, plain text or html formatted piece, but NOT a full html
341          document</DL>\r
342 </DD>\r
343 </DL>\r
344 <HR>\r
345 \r
346 <A NAME="getServiceCategories()"><!-- --></A><H3>\r
347 getServiceCategories</H3>\r
348 <PRE>\r
349 java.util.Set&lt;<A HREF="../../../compbio/data/msa/Category.html" title="class in compbio.data.msa">Category</A>&gt; <B>getServiceCategories</B>()</PRE>\r
350 <DL>\r
351 <DD>Gets the list of services per category. ServiceClassifier has the method
352  that returns Map<Category, Set<Services>>\r
353 <P>\r
354 <DD><DL>\r
355 </DL>\r
356 </DD>\r
357 <DD><DL>\r
358 \r
359 <DT><B>Returns:</B><DD>ServiceClassifier the object to represent relation between
360          Services and Categories</DL>\r
361 </DD>\r
362 </DL>\r
363 <!-- ========= END OF CLASS DATA ========= -->\r
364 <HR>\r
365 \r
366 \r
367 <!-- ======= START OF BOTTOM NAVBAR ====== -->\r
368 <A NAME="navbar_bottom"><!-- --></A>\r
369 <A HREF="#skip-navbar_bottom" title="Skip navigation links"></A>\r
370 <TABLE BORDER="0" WIDTH="100%" CELLPADDING="1" CELLSPACING="0" SUMMARY="">\r
371 <TR>\r
372 <TD COLSPAN=2 BGCOLOR="#EEEEFF" CLASS="NavBarCell1">\r
373 <A NAME="navbar_bottom_firstrow"><!-- --></A>\r
374 <TABLE BORDER="0" CELLPADDING="0" CELLSPACING="3" SUMMARY="">\r
375   <TR ALIGN="center" VALIGN="top">\r
376   <TD BGCOLOR="#EEEEFF" CLASS="NavBarCell1">    <A HREF="../../../overview-summary.html"><FONT CLASS="NavBarFont1"><B>Overview</B></FONT></A>&nbsp;</TD>\r
377   <TD BGCOLOR="#EEEEFF" CLASS="NavBarCell1">    <A HREF="package-summary.html"><FONT CLASS="NavBarFont1"><B>Package</B></FONT></A>&nbsp;</TD>\r
378   <TD BGCOLOR="#FFFFFF" CLASS="NavBarCell1Rev"> &nbsp;<FONT CLASS="NavBarFont1Rev"><B>Class</B></FONT>&nbsp;</TD>\r
379   <TD BGCOLOR="#EEEEFF" CLASS="NavBarCell1">    <A HREF="class-use/RegistryWS.html"><FONT CLASS="NavBarFont1"><B>Use</B></FONT></A>&nbsp;</TD>\r
380   <TD BGCOLOR="#EEEEFF" CLASS="NavBarCell1">    <A HREF="package-tree.html"><FONT CLASS="NavBarFont1"><B>Tree</B></FONT></A>&nbsp;</TD>\r
381   <TD BGCOLOR="#EEEEFF" CLASS="NavBarCell1">    <A HREF="../../../deprecated-list.html"><FONT CLASS="NavBarFont1"><B>Deprecated</B></FONT></A>&nbsp;</TD>\r
382   <TD BGCOLOR="#EEEEFF" CLASS="NavBarCell1">    <A HREF="../../../index-files/index-1.html"><FONT CLASS="NavBarFont1"><B>Index</B></FONT></A>&nbsp;</TD>\r
383   <TD BGCOLOR="#EEEEFF" CLASS="NavBarCell1">    <A HREF="../../../help-doc.html"><FONT CLASS="NavBarFont1"><B>Help</B></FONT></A>&nbsp;</TD>\r
384   </TR>\r
385 </TABLE>\r
386 </TD>\r
387 <TD ALIGN="right" VALIGN="top" ROWSPAN=3><EM>\r
388 </EM>\r
389 </TD>\r
390 </TR>\r
391 \r
392 <TR>\r
393 <TD BGCOLOR="white" CLASS="NavBarCell2"><FONT SIZE="-2">\r
394 &nbsp;<A HREF="../../../compbio/data/msa/MsaWS.html" title="interface in compbio.data.msa"><B>PREV CLASS</B></A>&nbsp;\r
395 &nbsp;<A HREF="../../../compbio/data/msa/SequenceAnnotation.html" title="interface in compbio.data.msa"><B>NEXT CLASS</B></A></FONT></TD>\r
396 <TD BGCOLOR="white" CLASS="NavBarCell2"><FONT SIZE="-2">\r
397   <A HREF="../../../index.html?compbio/data/msa/RegistryWS.html" target="_top"><B>FRAMES</B></A>  &nbsp;\r
398 &nbsp;<A HREF="RegistryWS.html" target="_top"><B>NO FRAMES</B></A>  &nbsp;\r
399 &nbsp;<SCRIPT type="text/javascript">\r
400   <!--\r
401   if(window==top) {\r
402     document.writeln('<A HREF="../../../allclasses-noframe.html"><B>All Classes</B></A>');\r
403   }\r
404   //-->\r
405 </SCRIPT>\r
406 <NOSCRIPT>\r
407   <A HREF="../../../allclasses-noframe.html"><B>All Classes</B></A>\r
408 </NOSCRIPT>\r
409 \r
410 \r
411 </FONT></TD>\r
412 </TR>\r
413 <TR>\r
414 <TD VALIGN="top" CLASS="NavBarCell3"><FONT SIZE="-2">\r
415   SUMMARY:&nbsp;NESTED&nbsp;|&nbsp;FIELD&nbsp;|&nbsp;CONSTR&nbsp;|&nbsp;<A HREF="#method_summary">METHOD</A></FONT></TD>\r
416 <TD VALIGN="top" CLASS="NavBarCell3"><FONT SIZE="-2">\r
417 DETAIL:&nbsp;FIELD&nbsp;|&nbsp;CONSTR&nbsp;|&nbsp;<A HREF="#method_detail">METHOD</A></FONT></TD>\r
418 </TR>\r
419 </TABLE>\r
420 <A NAME="skip-navbar_bottom"></A>\r
421 <!-- ======== END OF BOTTOM NAVBAR ======= -->\r
422 \r
423 <HR>\r
424 \r
425 </BODY>\r
426 </HTML>\r