2Dpfold.h File Reference
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Functions | |
| TwoDpfold_vars * | get_TwoDpfold_variables (const char *seq, const char *structure1, char *structure2, int circ) |
| Get a datastructure containing all necessary attributes and global folding switches. | |
| TwoDpfold_vars * | get_TwoDpfold_variables_from_MFE (TwoDfold_vars *mfe_vars) |
| Get the datastructure containing all necessary attributes and global folding switches from a pre-filled mfe-datastructure. | |
| void | destroy_TwoDpfold_variables (TwoDpfold_vars *vars) |
| Free all memory occupied by a TwoDpfold_vars datastructure. | |
| TwoDpfold_solution * | TwoDpfoldList (TwoDpfold_vars *vars, int maxDistance1, int maxDistance2) |
| Compute the partition function for all distance classes. | |
| char * | TwoDpfold_pbacktrack (TwoDpfold_vars *vars, int d1, int d2) |
| Sample secondary structure representatives from a set of distance classes according to their Boltzmann probability. | |
| char * | TwoDpfold_pbacktrack5 (TwoDpfold_vars *vars, int d1, int d2, unsigned int length) |
| Sample secondary structure representatives with a specified length from a set of distance classes according to their Boltzmann probability. | |
