LPfold.h File Reference

Function declarations of partition function variants of the Lfold algorithm. More...

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Functions
void	update_pf_paramsLP (int length)
plist *	pfl_fold (char *sequence, int winSize, int pairSize, float cutoffb, double **pU, struct plist **dpp2, FILE *pUfp, FILE *spup)
	Compute partition functions for locally stable secondary structures.
plist *	pfl_fold_par (char *sequence, int winSize, int pairSize, float cutoffb, double **pU, struct plist **dpp2, FILE *pUfp, FILE *spup, pf_paramT *parameters)
	Compute partition functions for locally stable secondary structures.
void	putoutpU_prob (double **pU, int length, int ulength, FILE *fp, int energies)
	Writes the unpaired probabilities (pU) or opening energies into a file.
void	putoutpU_prob_bin (double **pU, int length, int ulength, FILE *fp, int energies)
	Writes the unpaired probabilities (pU) or opening energies into a binary file.
void	init_pf_foldLP (int length)

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Detailed Description

Function declarations of partition function variants of the Lfold algorithm.

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Function Documentation

void init_pf_foldLP

(

int

length

)

Dunno if this function was ever used by external programs linking to RNAlib, but it was declared PUBLIC before. Anyway, never use this function as it will be removed soon and does nothing at all