Suboptimal structures according to Zuker et al. 1989

Collaboration diagram for Suboptimal structures according to Zuker et al. 1989:

Functions
SOLUTION *	zukersubopt (const char *string)
	Compute Zuker type suboptimal structures.
SOLUTION *	zukersubopt_par (const char *string, paramT *parameters)
	Compute Zuker type suboptimal structures.

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Detailed Description

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Function Documentation

SOLUTION* zukersubopt

(

const char *

string

)

Compute Zuker type suboptimal structures.

Compute Suboptimal structures according to M. Zuker, i.e. for every possible base pair the minimum energy structure containing the resp. base pair. Returns a list of these structures and their energies.

Parameters:

string

RNA sequence

Returns:

List of zuker suboptimal structures