\relax \@writefile{toc}{\contentsline {section}{\numberline {9.14}Predicting Consensus Structures from Alignment(s)}{50}{section.9.14}} \newlabel{group__consensus__fold}{{9.14}{50}{Predicting Consensus Structures from Alignment(s)\relax }{section.9.14}{}} \newlabel{group__consensus__fold_ga5e125c9586fcd4e2e1559fe76f7289cc}{{9.14}{50}{Functions\relax }{section*.32}{}} \citation{hofacker:2002} \citation{bernhart:2008} \gdef \LT@xxix {\LT@entry {1}{78.18367pt}\LT@entry {1}{380.5249pt}} \gdef \LT@xxx {\LT@entry {1}{78.18367pt}\LT@entry {1}{380.5249pt}} \@writefile{toc}{\contentsline {subsection}{\numberline {9.14.1}Detailed Description}{51}{subsection.9.14.1}} \@writefile{brf}{\backcite{hofacker:2002}{{51}{9.14.1}{subsection.9.14.1}}} \@writefile{brf}{\backcite{bernhart:2008}{{51}{9.14.1}{subsection.9.14.1}}} \@writefile{toc}{\contentsline {subsection}{\numberline {9.14.2}Function Documentation}{51}{subsection.9.14.2}} \@writefile{toc}{\contentsline {subsubsection}{\numberline {9.14.2.1}get\discretionary {-}{}{}\_\discretionary {-}{}{}mpi}{51}{subsubsection.9.14.2.1}} \newlabel{group__consensus__fold_gaa2d600be90844094ec145ea14a314d2f}{{9.14.2.1}{51}{get\-\_\-mpi\relax }{subsubsection.9.14.2.1}{}} \@writefile{toc}{\contentsline {subsubsection}{\numberline {9.14.2.2}energy\discretionary {-}{}{}\_\discretionary {-}{}{}of\discretionary {-}{}{}\_\discretionary {-}{}{}alistruct}{51}{subsubsection.9.14.2.2}} \newlabel{group__consensus__fold_ga1c48869c03b49a342bf4cbdd61900081}{{9.14.2.2}{51}{energy\-\_\-of\-\_\-alistruct\relax }{subsubsection.9.14.2.2}{}} \gdef \LT@xxxi {\LT@entry {1}{78.18367pt}\LT@entry {1}{380.5249pt}} \gdef \LT@xxxii {\LT@entry {1}{78.18367pt}\LT@entry {1}{380.5249pt}} \gdef \LT@xxxiii {\LT@entry {1}{78.18367pt}\LT@entry {1}{380.5249pt}} \@writefile{toc}{\contentsline {subsubsection}{\numberline {9.14.2.3}encode\discretionary {-}{}{}\_\discretionary {-}{}{}ali\discretionary {-}{}{}\_\discretionary {-}{}{}sequence}{52}{subsubsection.9.14.2.3}} \newlabel{group__consensus__fold_gaa3e40277c837d6f7603afe319884c786}{{9.14.2.3}{52}{encode\-\_\-ali\-\_\-sequence\relax }{subsubsection.9.14.2.3}{}} \@writefile{toc}{\contentsline {subsubsection}{\numberline {9.14.2.4}alloc\discretionary {-}{}{}\_\discretionary {-}{}{}sequence\discretionary {-}{}{}\_\discretionary {-}{}{}arrays}{52}{subsubsection.9.14.2.4}} \newlabel{group__consensus__fold_ga8a560930f7f2582cc3967723a86cfdfa}{{9.14.2.4}{52}{alloc\-\_\-sequence\-\_\-arrays\relax }{subsubsection.9.14.2.4}{}} \@writefile{toc}{\contentsline {subsubsection}{\numberline {9.14.2.5}free\discretionary {-}{}{}\_\discretionary {-}{}{}sequence\discretionary {-}{}{}\_\discretionary {-}{}{}arrays}{52}{subsubsection.9.14.2.5}} \newlabel{group__consensus__fold_ga298a420a8c879202e2617b3f724fde38}{{9.14.2.5}{52}{free\-\_\-sequence\-\_\-arrays\relax }{subsubsection.9.14.2.5}{}} \gdef \LT@xxxiv {\LT@entry {1}{78.18367pt}\LT@entry {1}{380.5249pt}} \@writefile{toc}{\contentsline {subsubsection}{\numberline {9.14.2.6}get\discretionary {-}{}{}\_\discretionary {-}{}{}alipf\discretionary {-}{}{}\_\discretionary {-}{}{}arrays}{53}{subsubsection.9.14.2.6}} \newlabel{group__consensus__fold_ga0cc49457fd79eeb04d4a7f97c868b09b}{{9.14.2.6}{53}{get\-\_\-alipf\-\_\-arrays\relax }{subsubsection.9.14.2.6}{}} \@writefile{toc}{\contentsline {subsection}{\numberline {9.14.3}Variable Documentation}{53}{subsection.9.14.3}} \@writefile{toc}{\contentsline {subsubsection}{\numberline {9.14.3.1}cv\discretionary {-}{}{}\_\discretionary {-}{}{}fact}{53}{subsubsection.9.14.3.1}} \newlabel{group__consensus__fold_gaf3cbac6ff5d706d6e414677841ddf94c}{{9.14.3.1}{53}{cv\-\_\-fact\relax }{subsubsection.9.14.3.1}{}} \@writefile{toc}{\contentsline {subsubsection}{\numberline {9.14.3.2}nc\discretionary {-}{}{}\_\discretionary {-}{}{}fact}{53}{subsubsection.9.14.3.2}} \newlabel{group__consensus__fold_ga502948a122a2af5b914355b1f3ea2f61}{{9.14.3.2}{53}{nc\-\_\-fact\relax }{subsubsection.9.14.3.2}{}} \@setckpt{group__consensus__fold}{ \setcounter{page}{54} \setcounter{equation}{0} \setcounter{enumi}{0} \setcounter{enumii}{0} \setcounter{enumiii}{0} \setcounter{enumiv}{0} \setcounter{footnote}{0} \setcounter{mpfootnote}{0} \setcounter{part}{0} \setcounter{chapter}{9} \setcounter{section}{14} \setcounter{subsection}{3} \setcounter{subsubsection}{2} \setcounter{paragraph}{0} \setcounter{subparagraph}{0} \setcounter{figure}{0} \setcounter{table}{34} \setcounter{NAT@ctr}{0} \setcounter{float@type}{8} \setcounter{lstnumber}{1} \setcounter{Item}{0} \setcounter{Hfootnote}{0} \setcounter{bookmark@seq@number}{94} \setcounter{lofdepth}{1} \setcounter{lotdepth}{1} \setcounter{LT@tables}{34} \setcounter{LT@chunks}{1} \setcounter{PWSTtable}{0} \setcounter{lstlisting}{0} \setcounter{section@level}{3} }