\relax \@writefile{toc}{\contentsline {section}{\numberline {9.24}Converting energy parameter files}{88}{section.9.24}} \newlabel{group__energy__parameters__convert}{{9.24}{88}{Converting energy parameter files\relax }{section.9.24}{}} \@writefile{toc}{\contentsline {subsection}{\numberline {9.24.1}Detailed Description}{89}{subsection.9.24.1}} \@writefile{toc}{\contentsline {subsection}{\numberline {9.24.2}Define Documentation}{89}{subsection.9.24.2}} \@writefile{toc}{\contentsline {subsubsection}{\numberline {9.24.2.1}VRNA\_\discretionary {-}{}{}CONVERT\_\discretionary {-}{}{}OUTPUT\_\discretionary {-}{}{}ALL}{89}{subsubsection.9.24.2.1}} \newlabel{group__energy__parameters__convert_ga8dc6aee5a806c49b71557152f9616bc4}{{9.24.2.1}{89}{VRNA\_\-CONVERT\_\-OUTPUT\_\-ALL\relax }{subsubsection.9.24.2.1}{}} \@writefile{toc}{\contentsline {subsubsection}{\numberline {9.24.2.2}VRNA\_\discretionary {-}{}{}CONVERT\_\discretionary {-}{}{}OUTPUT\_\discretionary {-}{}{}HP}{89}{subsubsection.9.24.2.2}} \newlabel{group__energy__parameters__convert_gaf66fe2cb11dfcfd32d791049c254a8a4}{{9.24.2.2}{89}{VRNA\_\-CONVERT\_\-OUTPUT\_\-HP\relax }{subsubsection.9.24.2.2}{}} \@writefile{toc}{\contentsline {subsubsection}{\numberline {9.24.2.3}VRNA\_\discretionary {-}{}{}CONVERT\_\discretionary {-}{}{}OUTPUT\_\discretionary {-}{}{}STACK}{89}{subsubsection.9.24.2.3}} \newlabel{group__energy__parameters__convert_gad23522d63f8d4c50d5a5deee9bee3ef2}{{9.24.2.3}{89}{VRNA\_\-CONVERT\_\-OUTPUT\_\-STACK\relax }{subsubsection.9.24.2.3}{}} \@writefile{toc}{\contentsline {subsubsection}{\numberline {9.24.2.4}VRNA\_\discretionary {-}{}{}CONVERT\_\discretionary {-}{}{}OUTPUT\_\discretionary {-}{}{}MM\_\discretionary {-}{}{}HP}{89}{subsubsection.9.24.2.4}} \newlabel{group__energy__parameters__convert_gaa892c7b4957459090f3e08da298cc347}{{9.24.2.4}{89}{VRNA\_\-CONVERT\_\-OUTPUT\_\-MM\_\-HP\relax }{subsubsection.9.24.2.4}{}} \@writefile{toc}{\contentsline {subsubsection}{\numberline {9.24.2.5}VRNA\_\discretionary {-}{}{}CONVERT\_\discretionary {-}{}{}OUTPUT\_\discretionary {-}{}{}MM\_\discretionary {-}{}{}INT}{89}{subsubsection.9.24.2.5}} \newlabel{group__energy__parameters__convert_ga4ff223fb1f9c62cd92d9ab811ad03d55}{{9.24.2.5}{89}{VRNA\_\-CONVERT\_\-OUTPUT\_\-MM\_\-INT\relax }{subsubsection.9.24.2.5}{}} \@writefile{toc}{\contentsline {subsubsection}{\numberline {9.24.2.6}VRNA\_\discretionary {-}{}{}CONVERT\_\discretionary {-}{}{}OUTPUT\_\discretionary {-}{}{}MM\_\discretionary {-}{}{}INT\_\discretionary {-}{}{}1N}{89}{subsubsection.9.24.2.6}} \newlabel{group__energy__parameters__convert_gaf5d3743219f83c6348155cd81e755bbb}{{9.24.2.6}{89}{VRNA\_\-CONVERT\_\-OUTPUT\_\-MM\_\-INT\_\-1N\relax }{subsubsection.9.24.2.6}{}} \@writefile{toc}{\contentsline {subsubsection}{\numberline {9.24.2.7}VRNA\_\discretionary {-}{}{}CONVERT\_\discretionary {-}{}{}OUTPUT\_\discretionary {-}{}{}MM\_\discretionary {-}{}{}INT\_\discretionary {-}{}{}23}{89}{subsubsection.9.24.2.7}} \newlabel{group__energy__parameters__convert_ga78382ec622ba99e0ac2262317bdd7316}{{9.24.2.7}{89}{VRNA\_\-CONVERT\_\-OUTPUT\_\-MM\_\-INT\_\-23\relax }{subsubsection.9.24.2.7}{}} \@writefile{toc}{\contentsline {subsubsection}{\numberline {9.24.2.8}VRNA\_\discretionary {-}{}{}CONVERT\_\discretionary {-}{}{}OUTPUT\_\discretionary {-}{}{}MM\_\discretionary {-}{}{}MULTI}{89}{subsubsection.9.24.2.8}} \newlabel{group__energy__parameters__convert_gae67af9f1cdf7baf2865481282a5d1034}{{9.24.2.8}{89}{VRNA\_\-CONVERT\_\-OUTPUT\_\-MM\_\-MULTI\relax }{subsubsection.9.24.2.8}{}} \@writefile{toc}{\contentsline {subsubsection}{\numberline {9.24.2.9}VRNA\_\discretionary {-}{}{}CONVERT\_\discretionary {-}{}{}OUTPUT\_\discretionary {-}{}{}MM\_\discretionary {-}{}{}EXT}{89}{subsubsection.9.24.2.9}} \newlabel{group__energy__parameters__convert_gaf14ead7ef1fdbe725ade653750fc51e3}{{9.24.2.9}{89}{VRNA\_\-CONVERT\_\-OUTPUT\_\-MM\_\-EXT\relax }{subsubsection.9.24.2.9}{}} \@writefile{toc}{\contentsline {subsubsection}{\numberline {9.24.2.10}VRNA\_\discretionary {-}{}{}CONVERT\_\discretionary {-}{}{}OUTPUT\_\discretionary {-}{}{}DANGLE5}{90}{subsubsection.9.24.2.10}} \newlabel{group__energy__parameters__convert_ga036ffd996d8c8a9acf631760dd1da24b}{{9.24.2.10}{90}{VRNA\_\-CONVERT\_\-OUTPUT\_\-DANGLE5\relax }{subsubsection.9.24.2.10}{}} \@writefile{toc}{\contentsline {subsubsection}{\numberline {9.24.2.11}VRNA\_\discretionary {-}{}{}CONVERT\_\discretionary {-}{}{}OUTPUT\_\discretionary {-}{}{}DANGLE3}{90}{subsubsection.9.24.2.11}} \newlabel{group__energy__parameters__convert_ga34a8a5479ef885834ef32f3fb43d79bc}{{9.24.2.11}{90}{VRNA\_\-CONVERT\_\-OUTPUT\_\-DANGLE3\relax }{subsubsection.9.24.2.11}{}} \@writefile{toc}{\contentsline {subsubsection}{\numberline {9.24.2.12}VRNA\_\discretionary {-}{}{}CONVERT\_\discretionary {-}{}{}OUTPUT\_\discretionary {-}{}{}INT\_\discretionary {-}{}{}11}{90}{subsubsection.9.24.2.12}} \newlabel{group__energy__parameters__convert_ga079aafefd5f8ab57ee5120099a34bd25}{{9.24.2.12}{90}{VRNA\_\-CONVERT\_\-OUTPUT\_\-INT\_\-11\relax }{subsubsection.9.24.2.12}{}} \@writefile{toc}{\contentsline {subsubsection}{\numberline {9.24.2.13}VRNA\_\discretionary {-}{}{}CONVERT\_\discretionary {-}{}{}OUTPUT\_\discretionary {-}{}{}INT\_\discretionary {-}{}{}21}{90}{subsubsection.9.24.2.13}} \newlabel{group__energy__parameters__convert_gacf770881d9034431ebe741642342a1f9}{{9.24.2.13}{90}{VRNA\_\-CONVERT\_\-OUTPUT\_\-INT\_\-21\relax }{subsubsection.9.24.2.13}{}} \@writefile{toc}{\contentsline {subsubsection}{\numberline {9.24.2.14}VRNA\_\discretionary {-}{}{}CONVERT\_\discretionary {-}{}{}OUTPUT\_\discretionary {-}{}{}INT\_\discretionary {-}{}{}22}{90}{subsubsection.9.24.2.14}} \newlabel{group__energy__parameters__convert_gaa307671e2631cdacad9cbe4c6583b05f}{{9.24.2.14}{90}{VRNA\_\-CONVERT\_\-OUTPUT\_\-INT\_\-22\relax }{subsubsection.9.24.2.14}{}} \@writefile{toc}{\contentsline {subsubsection}{\numberline {9.24.2.15}VRNA\_\discretionary {-}{}{}CONVERT\_\discretionary {-}{}{}OUTPUT\_\discretionary {-}{}{}BULGE}{90}{subsubsection.9.24.2.15}} \newlabel{group__energy__parameters__convert_ga7092fe0be4de6f02cc0bf08e81af726a}{{9.24.2.15}{90}{VRNA\_\-CONVERT\_\-OUTPUT\_\-BULGE\relax }{subsubsection.9.24.2.15}{}} \@writefile{toc}{\contentsline {subsubsection}{\numberline {9.24.2.16}VRNA\_\discretionary {-}{}{}CONVERT\_\discretionary {-}{}{}OUTPUT\_\discretionary {-}{}{}INT}{90}{subsubsection.9.24.2.16}} \newlabel{group__energy__parameters__convert_gac5c2289fdf8ff1b980976d1613ff943a}{{9.24.2.16}{90}{VRNA\_\-CONVERT\_\-OUTPUT\_\-INT\relax }{subsubsection.9.24.2.16}{}} \@writefile{toc}{\contentsline {subsubsection}{\numberline {9.24.2.17}VRNA\_\discretionary {-}{}{}CONVERT\_\discretionary {-}{}{}OUTPUT\_\discretionary {-}{}{}ML}{90}{subsubsection.9.24.2.17}} \newlabel{group__energy__parameters__convert_gaf2c8755d64eff3852aa45df9ac80a4fe}{{9.24.2.17}{90}{VRNA\_\-CONVERT\_\-OUTPUT\_\-ML\relax }{subsubsection.9.24.2.17}{}} \@writefile{toc}{\contentsline {subsubsection}{\numberline {9.24.2.18}VRNA\_\discretionary {-}{}{}CONVERT\_\discretionary {-}{}{}OUTPUT\_\discretionary {-}{}{}MISC}{90}{subsubsection.9.24.2.18}} \newlabel{group__energy__parameters__convert_ga46d5b1535ae86060b6317565b7c6b40b}{{9.24.2.18}{90}{VRNA\_\-CONVERT\_\-OUTPUT\_\-MISC\relax }{subsubsection.9.24.2.18}{}} \@writefile{toc}{\contentsline {subsubsection}{\numberline {9.24.2.19}VRNA\_\discretionary {-}{}{}CONVERT\_\discretionary {-}{}{}OUTPUT\_\discretionary {-}{}{}SPECIAL\_\discretionary {-}{}{}HP}{90}{subsubsection.9.24.2.19}} \newlabel{group__energy__parameters__convert_gaa1ff48a79642d69579d1766561ec6db6}{{9.24.2.19}{90}{VRNA\_\-CONVERT\_\-OUTPUT\_\-SPECIAL\_\-HP\relax }{subsubsection.9.24.2.19}{}} \@writefile{toc}{\contentsline {subsubsection}{\numberline {9.24.2.20}VRNA\_\discretionary {-}{}{}CONVERT\_\discretionary {-}{}{}OUTPUT\_\discretionary {-}{}{}VANILLA}{91}{subsubsection.9.24.2.20}} \newlabel{group__energy__parameters__convert_ga0d4e8a836bb4864ab5129c085dbf592d}{{9.24.2.20}{91}{VRNA\_\-CONVERT\_\-OUTPUT\_\-VANILLA\relax }{subsubsection.9.24.2.20}{}} \@writefile{toc}{\contentsline {subsubsection}{\numberline {9.24.2.21}VRNA\_\discretionary {-}{}{}CONVERT\_\discretionary {-}{}{}OUTPUT\_\discretionary {-}{}{}NINIO}{91}{subsubsection.9.24.2.21}} \newlabel{group__energy__parameters__convert_ga2eb0462f16939ddacdaf751a88d675ce}{{9.24.2.21}{91}{VRNA\_\-CONVERT\_\-OUTPUT\_\-NINIO\relax }{subsubsection.9.24.2.21}{}} \@writefile{toc}{\contentsline {subsubsection}{\numberline {9.24.2.22}VRNA\_\discretionary {-}{}{}CONVERT\_\discretionary {-}{}{}OUTPUT\_\discretionary {-}{}{}DUMP}{91}{subsubsection.9.24.2.22}} \newlabel{group__energy__parameters__convert_gac86976e9c2a55b3a6481ea60044f6098}{{9.24.2.22}{91}{VRNA\_\-CONVERT\_\-OUTPUT\_\-DUMP\relax }{subsubsection.9.24.2.22}{}} \@writefile{toc}{\contentsline {subsection}{\numberline {9.24.3}Function Documentation}{91}{subsection.9.24.3}} \@writefile{toc}{\contentsline {subsubsection}{\numberline {9.24.3.1}convert\_\discretionary {-}{}{}parameter\_\discretionary {-}{}{}file}{91}{subsubsection.9.24.3.1}} \newlabel{group__energy__parameters__convert_gafbe538bc4eb2cf2a33326e1010005f8a}{{9.24.3.1}{91}{convert\_\-parameter\_\-file\relax }{subsubsection.9.24.3.1}{}} \@setckpt{group__energy__parameters__convert}{ \setcounter{page}{93} \setcounter{equation}{0} \setcounter{enumi}{0} \setcounter{enumii}{0} \setcounter{enumiii}{0} \setcounter{enumiv}{0} \setcounter{footnote}{0} \setcounter{mpfootnote}{0} \setcounter{part}{0} \setcounter{chapter}{9} \setcounter{section}{24} \setcounter{subsection}{3} \setcounter{subsubsection}{1} \setcounter{paragraph}{0} \setcounter{subparagraph}{0} \setcounter{figure}{0} \setcounter{table}{0} \setcounter{float@type}{8} \setcounter{lstlisting}{0} \setcounter{lstnumber}{1} \setcounter{Item}{0} \setcounter{Hfootnote}{0} \setcounter{section@level}{3} }