hhalign.lo: hhalign.cpp \ /usr/lib/gcc/x86_64-redhat-linux/4.4.7/../../../../include/c++/4.4.7/iostream \ /usr/lib/gcc/x86_64-redhat-linux/4.4.7/../../../../include/c++/4.4.7/x86_64-redhat-linux/bits/c++config.h \ /usr/include/bits/wordsize.h \ /usr/lib/gcc/x86_64-redhat-linux/4.4.7/../../../../include/c++/4.4.7/x86_64-redhat-linux/bits/os_defines.h \ /usr/include/features.h /usr/include/sys/cdefs.h \ /usr/include/gnu/stubs.h /usr/include/gnu/stubs-64.h \ /usr/lib/gcc/x86_64-redhat-linux/4.4.7/../../../../include/c++/4.4.7/x86_64-redhat-linux/bits/cpu_defines.h \ /usr/lib/gcc/x86_64-redhat-linux/4.4.7/../../../../include/c++/4.4.7/ostream \ /usr/lib/gcc/x86_64-redhat-linux/4.4.7/../../../../include/c++/4.4.7/ios \ /usr/lib/gcc/x86_64-redhat-linux/4.4.7/../../../../include/c++/4.4.7/iosfwd \ /usr/lib/gcc/x86_64-redhat-linux/4.4.7/../../../../include/c++/4.4.7/bits/stringfwd.h \ /usr/lib/gcc/x86_64-redhat-linux/4.4.7/../../../../include/c++/4.4.7/bits/postypes.h \ /usr/lib/gcc/x86_64-redhat-linux/4.4.7/../../../../include/c++/4.4.7/cwchar \ /usr/lib/gcc/x86_64-redhat-linux/4.4.7/../../../../include/c++/4.4.7/cstddef \ /usr/lib/gcc/x86_64-redhat-linux/4.4.7/include/stddef.h \ /usr/include/wchar.h /usr/include/stdio.h \ /usr/lib/gcc/x86_64-redhat-linux/4.4.7/include/stdarg.h \ /usr/include/bits/wchar.h /usr/include/xlocale.h \ /usr/lib/gcc/x86_64-redhat-linux/4.4.7/../../../../include/c++/4.4.7/exception \ /usr/lib/gcc/x86_64-redhat-linux/4.4.7/../../../../include/c++/4.4.7/bits/char_traits.h \ /usr/lib/gcc/x86_64-redhat-linux/4.4.7/../../../../include/c++/4.4.7/bits/stl_algobase.h \ /usr/lib/gcc/x86_64-redhat-linux/4.4.7/../../../../include/c++/4.4.7/bits/functexcept.h \ /usr/lib/gcc/x86_64-redhat-linux/4.4.7/../../../../include/c++/4.4.7/exception_defines.h \ /usr/lib/gcc/x86_64-redhat-linux/4.4.7/../../../../include/c++/4.4.7/bits/cpp_type_traits.h \ /usr/lib/gcc/x86_64-redhat-linux/4.4.7/../../../../include/c++/4.4.7/ext/type_traits.h \ /usr/lib/gcc/x86_64-redhat-linux/4.4.7/../../../../include/c++/4.4.7/ext/numeric_traits.h \ /usr/lib/gcc/x86_64-redhat-linux/4.4.7/../../../../include/c++/4.4.7/bits/stl_pair.h \ /usr/lib/gcc/x86_64-redhat-linux/4.4.7/../../../../include/c++/4.4.7/bits/move.h \ /usr/lib/gcc/x86_64-redhat-linux/4.4.7/../../../../include/c++/4.4.7/bits/concept_check.h \ /usr/lib/gcc/x86_64-redhat-linux/4.4.7/../../../../include/c++/4.4.7/bits/stl_iterator_base_types.h \ /usr/lib/gcc/x86_64-redhat-linux/4.4.7/../../../../include/c++/4.4.7/bits/stl_iterator_base_funcs.h \ /usr/lib/gcc/x86_64-redhat-linux/4.4.7/../../../../include/c++/4.4.7/bits/stl_iterator.h \ /usr/lib/gcc/x86_64-redhat-linux/4.4.7/../../../../include/c++/4.4.7/debug/debug.h \ /usr/lib/gcc/x86_64-redhat-linux/4.4.7/../../../../include/c++/4.4.7/bits/localefwd.h \ /usr/lib/gcc/x86_64-redhat-linux/4.4.7/../../../../include/c++/4.4.7/x86_64-redhat-linux/bits/c++locale.h \ /usr/lib/gcc/x86_64-redhat-linux/4.4.7/../../../../include/c++/4.4.7/clocale \ /usr/include/locale.h /usr/include/bits/locale.h \ /usr/lib/gcc/x86_64-redhat-linux/4.4.7/../../../../include/c++/4.4.7/cctype \ /usr/include/ctype.h /usr/include/bits/types.h \ /usr/include/bits/typesizes.h /usr/include/endian.h \ /usr/include/bits/endian.h /usr/include/bits/byteswap.h \ /usr/lib/gcc/x86_64-redhat-linux/4.4.7/../../../../include/c++/4.4.7/bits/ios_base.h \ /usr/lib/gcc/x86_64-redhat-linux/4.4.7/../../../../include/c++/4.4.7/ext/atomicity.h \ /usr/lib/gcc/x86_64-redhat-linux/4.4.7/../../../../include/c++/4.4.7/x86_64-redhat-linux/bits/gthr.h \ /usr/lib/gcc/x86_64-redhat-linux/4.4.7/../../../../include/c++/4.4.7/x86_64-redhat-linux/bits/gthr-default.h \ /usr/include/pthread.h /usr/include/sched.h /usr/include/time.h \ /usr/include/bits/sched.h /usr/include/bits/time.h \ /usr/include/bits/pthreadtypes.h /usr/include/bits/setjmp.h \ /usr/include/unistd.h /usr/include/bits/posix_opt.h \ /usr/include/bits/environments.h /usr/include/bits/confname.h \ /usr/include/getopt.h \ /usr/lib/gcc/x86_64-redhat-linux/4.4.7/../../../../include/c++/4.4.7/x86_64-redhat-linux/bits/atomic_word.h \ /usr/lib/gcc/x86_64-redhat-linux/4.4.7/../../../../include/c++/4.4.7/bits/locale_classes.h \ /usr/lib/gcc/x86_64-redhat-linux/4.4.7/../../../../include/c++/4.4.7/string \ /usr/lib/gcc/x86_64-redhat-linux/4.4.7/../../../../include/c++/4.4.7/bits/allocator.h \ /usr/lib/gcc/x86_64-redhat-linux/4.4.7/../../../../include/c++/4.4.7/x86_64-redhat-linux/bits/c++allocator.h \ /usr/lib/gcc/x86_64-redhat-linux/4.4.7/../../../../include/c++/4.4.7/ext/new_allocator.h \ /usr/lib/gcc/x86_64-redhat-linux/4.4.7/../../../../include/c++/4.4.7/new \ /usr/lib/gcc/x86_64-redhat-linux/4.4.7/../../../../include/c++/4.4.7/bits/ostream_insert.h \ /usr/lib/gcc/x86_64-redhat-linux/4.4.7/../../../../include/c++/4.4.7/cxxabi-forced.h \ /usr/lib/gcc/x86_64-redhat-linux/4.4.7/../../../../include/c++/4.4.7/bits/stl_function.h \ /usr/lib/gcc/x86_64-redhat-linux/4.4.7/../../../../include/c++/4.4.7/backward/binders.h \ /usr/lib/gcc/x86_64-redhat-linux/4.4.7/../../../../include/c++/4.4.7/bits/basic_string.h \ /usr/lib/gcc/x86_64-redhat-linux/4.4.7/../../../../include/c++/4.4.7/initializer_list \ /usr/lib/gcc/x86_64-redhat-linux/4.4.7/../../../../include/c++/4.4.7/bits/basic_string.tcc \ /usr/lib/gcc/x86_64-redhat-linux/4.4.7/../../../../include/c++/4.4.7/bits/locale_classes.tcc \ /usr/lib/gcc/x86_64-redhat-linux/4.4.7/../../../../include/c++/4.4.7/streambuf \ /usr/lib/gcc/x86_64-redhat-linux/4.4.7/../../../../include/c++/4.4.7/bits/streambuf.tcc \ /usr/lib/gcc/x86_64-redhat-linux/4.4.7/../../../../include/c++/4.4.7/bits/basic_ios.h \ /usr/lib/gcc/x86_64-redhat-linux/4.4.7/../../../../include/c++/4.4.7/bits/locale_facets.h \ /usr/lib/gcc/x86_64-redhat-linux/4.4.7/../../../../include/c++/4.4.7/cwctype \ /usr/include/wctype.h \ /usr/lib/gcc/x86_64-redhat-linux/4.4.7/../../../../include/c++/4.4.7/x86_64-redhat-linux/bits/ctype_base.h \ /usr/lib/gcc/x86_64-redhat-linux/4.4.7/../../../../include/c++/4.4.7/bits/streambuf_iterator.h \ /usr/lib/gcc/x86_64-redhat-linux/4.4.7/../../../../include/c++/4.4.7/x86_64-redhat-linux/bits/ctype_inline.h \ /usr/lib/gcc/x86_64-redhat-linux/4.4.7/../../../../include/c++/4.4.7/bits/locale_facets.tcc \ /usr/lib/gcc/x86_64-redhat-linux/4.4.7/../../../../include/c++/4.4.7/bits/basic_ios.tcc \ /usr/lib/gcc/x86_64-redhat-linux/4.4.7/../../../../include/c++/4.4.7/bits/ostream.tcc \ /usr/lib/gcc/x86_64-redhat-linux/4.4.7/../../../../include/c++/4.4.7/istream \ /usr/lib/gcc/x86_64-redhat-linux/4.4.7/../../../../include/c++/4.4.7/bits/istream.tcc \ /usr/lib/gcc/x86_64-redhat-linux/4.4.7/../../../../include/c++/4.4.7/fstream \ /usr/lib/gcc/x86_64-redhat-linux/4.4.7/../../../../include/c++/4.4.7/bits/codecvt.h \ /usr/lib/gcc/x86_64-redhat-linux/4.4.7/../../../../include/c++/4.4.7/cstdio \ /usr/include/libio.h /usr/include/_G_config.h \ /usr/include/bits/stdio_lim.h /usr/include/bits/sys_errlist.h \ /usr/include/bits/stdio.h \ /usr/lib/gcc/x86_64-redhat-linux/4.4.7/../../../../include/c++/4.4.7/x86_64-redhat-linux/bits/basic_file.h \ /usr/lib/gcc/x86_64-redhat-linux/4.4.7/../../../../include/c++/4.4.7/x86_64-redhat-linux/bits/c++io.h \ /usr/lib/gcc/x86_64-redhat-linux/4.4.7/../../../../include/c++/4.4.7/bits/fstream.tcc \ /usr/include/string.h /usr/include/stdlib.h \ /usr/include/bits/waitflags.h /usr/include/bits/waitstatus.h \ /usr/include/sys/types.h /usr/include/sys/select.h \ /usr/include/bits/select.h /usr/include/bits/sigset.h \ /usr/include/sys/sysmacros.h /usr/include/alloca.h /usr/include/math.h \ /usr/include/bits/huge_val.h /usr/include/bits/huge_valf.h \ /usr/include/bits/huge_vall.h /usr/include/bits/inf.h \ /usr/include/bits/nan.h /usr/include/bits/mathdef.h \ /usr/include/bits/mathcalls.h /usr/include/bits/mathinline.h \ /usr/lib/gcc/x86_64-redhat-linux/4.4.7/include/limits.h \ /usr/lib/gcc/x86_64-redhat-linux/4.4.7/include/syslimits.h \ /usr/include/limits.h /usr/include/bits/posix1_lim.h \ /usr/include/bits/local_lim.h /usr/include/linux/limits.h \ /usr/include/bits/posix2_lim.h /usr/include/bits/xopen_lim.h \ /usr/lib/gcc/x86_64-redhat-linux/4.4.7/include/float.h general.h \ ../clustal/log.h \ /usr/lib/gcc/x86_64-redhat-linux/4.4.7/include/stdbool.h util-C.h \ /usr/include/sys/time.h ../config.h list-C.h list.h hash-C.h hash.h \ hhdecl-C.h hhutil-C.h hhmatrices-C.h hhhmm.h hhhit.h hhalignment.h \ hhhalfalignment.h hhfullalignment.h hhhitlist.h hhhmm-C.h \ hhalignment-C.h ../../src/config.h hhhit-C.h hhhalfalignment-C.h \ hhfullalignment-C.h hhhitlist-C.h hhfunc-C.h /usr/lib/gcc/x86_64-redhat-linux/4.4.7/../../../../include/c++/4.4.7/iostream: /usr/lib/gcc/x86_64-redhat-linux/4.4.7/../../../../include/c++/4.4.7/x86_64-redhat-linux/bits/c++config.h: /usr/include/bits/wordsize.h: 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/usr/lib/gcc/x86_64-redhat-linux/4.4.7/../../../../include/c++/4.4.7/bits/locale_facets.tcc: /usr/lib/gcc/x86_64-redhat-linux/4.4.7/../../../../include/c++/4.4.7/bits/basic_ios.tcc: /usr/lib/gcc/x86_64-redhat-linux/4.4.7/../../../../include/c++/4.4.7/bits/ostream.tcc: /usr/lib/gcc/x86_64-redhat-linux/4.4.7/../../../../include/c++/4.4.7/istream: /usr/lib/gcc/x86_64-redhat-linux/4.4.7/../../../../include/c++/4.4.7/bits/istream.tcc: /usr/lib/gcc/x86_64-redhat-linux/4.4.7/../../../../include/c++/4.4.7/fstream: /usr/lib/gcc/x86_64-redhat-linux/4.4.7/../../../../include/c++/4.4.7/bits/codecvt.h: /usr/lib/gcc/x86_64-redhat-linux/4.4.7/../../../../include/c++/4.4.7/cstdio: /usr/include/libio.h: /usr/include/_G_config.h: /usr/include/bits/stdio_lim.h: /usr/include/bits/sys_errlist.h: /usr/include/bits/stdio.h: /usr/lib/gcc/x86_64-redhat-linux/4.4.7/../../../../include/c++/4.4.7/x86_64-redhat-linux/bits/basic_file.h: /usr/lib/gcc/x86_64-redhat-linux/4.4.7/../../../../include/c++/4.4.7/x86_64-redhat-linux/bits/c++io.h: /usr/lib/gcc/x86_64-redhat-linux/4.4.7/../../../../include/c++/4.4.7/bits/fstream.tcc: /usr/include/string.h: /usr/include/stdlib.h: /usr/include/bits/waitflags.h: /usr/include/bits/waitstatus.h: /usr/include/sys/types.h: /usr/include/sys/select.h: /usr/include/bits/select.h: /usr/include/bits/sigset.h: /usr/include/sys/sysmacros.h: /usr/include/alloca.h: /usr/include/math.h: /usr/include/bits/huge_val.h: /usr/include/bits/huge_valf.h: /usr/include/bits/huge_vall.h: /usr/include/bits/inf.h: /usr/include/bits/nan.h: /usr/include/bits/mathdef.h: /usr/include/bits/mathcalls.h: /usr/include/bits/mathinline.h: /usr/lib/gcc/x86_64-redhat-linux/4.4.7/include/limits.h: /usr/lib/gcc/x86_64-redhat-linux/4.4.7/include/syslimits.h: /usr/include/limits.h: /usr/include/bits/posix1_lim.h: /usr/include/bits/local_lim.h: /usr/include/linux/limits.h: /usr/include/bits/posix2_lim.h: /usr/include/bits/xopen_lim.h: /usr/lib/gcc/x86_64-redhat-linux/4.4.7/include/float.h: general.h: ../clustal/log.h: /usr/lib/gcc/x86_64-redhat-linux/4.4.7/include/stdbool.h: util-C.h: /usr/include/sys/time.h: ../config.h: list-C.h: list.h: hash-C.h: hash.h: hhdecl-C.h: hhutil-C.h: hhmatrices-C.h: hhhmm.h: hhhit.h: hhalignment.h: hhhalfalignment.h: hhfullalignment.h: hhhitlist.h: hhhmm-C.h: hhalignment-C.h: ../../src/config.h: hhhit-C.h: hhhalfalignment-C.h: hhfullalignment-C.h: hhhitlist-C.h: hhfunc-C.h: