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 multipleAlign/../alignment/../general/VectorOutOfRange.h \
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 multipleAlign/ProfileBase.h

config.h:

multipleAlign/ProfileStandard.h:

multipleAlign/../alignment/Alignment.h:

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/usr/include/pthread.h:

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/usr/include/bits/sched.h:

/usr/include/bits/time.h:

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/usr/include/unistd.h:

/usr/include/bits/posix_opt.h:

/usr/include/bits/environments.h:

/usr/include/bits/confname.h:

/usr/include/getopt.h:

/usr/lib/gcc/x86_64-redhat-linux/4.4.7/../../../../include/c++/4.4.7/x86_64-redhat-linux/bits/atomic_word.h:

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/usr/lib/gcc/x86_64-redhat-linux/4.4.7/../../../../include/c++/4.4.7/stdexcept:

multipleAlign/../alignment/Sequence.h:

multipleAlign/../alignment/../general/userparams.h:

multipleAlign/../alignment/../general/UserParameters.h:

/usr/lib/gcc/x86_64-redhat-linux/4.4.7/../../../../include/c++/4.4.7/iostream:

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multipleAlign/../alignment/../general/utils.h:

multipleAlign/../alignment/../general/Utility.h:

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multipleAlign/../alignment/../general/clustalw.h:

multipleAlign/../alignment/../general/general.h:

multipleAlign/../alignment/../general/Array2D.h:

multipleAlign/../alignment/../general/SquareMat.h:

multipleAlign/../alignment/../general/SymMatrix.h:

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multipleAlign/../alignment/../general/utils.h:

multipleAlign/../alignment/../substitutionMatrix/globalmatrix.h:

multipleAlign/../alignment/../substitutionMatrix/SubMatrix.h:

multipleAlign/../alignment/../substitutionMatrix/../general/clustalw.h:

multipleAlign/../alignment/../substitutionMatrix/../general/userparams.h:

multipleAlign/../alignment/../substitutionMatrix/../general/utils.h:

multipleAlign/../alignment/../substitutionMatrix/../general/Array2D.h:

multipleAlign/../alignment/../general/VectorOutOfRange.h:

multipleAlign/../alignment/../general/SequenceNotFoundException.h:

multipleAlign/ProfileBase.h: