/* Copyright (c) 2009 Peter Troshin * * JAva Bioinformatics Analysis Web Services (JABAWS) @version: 1.0 * * This library is free software; you can redistribute it and/or modify it under the terms of the * Apache License version 2 as published by the Apache Software Foundation * * This library is distributed in the hope that it will be useful, but WITHOUT ANY WARRANTY; without * even the implied warranty of MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the Apache * License for more details. * * A copy of the license is in apache_license.txt. It is also available here: * @see: http://www.apache.org/licenses/LICENSE-2.0.txt * * Any republication or derived work distributed in source code form * must include this copyright and license notice. */ package compbio.metadata; import java.util.List; import javax.xml.bind.ValidationException; import javax.xml.bind.annotation.XmlAccessType; import javax.xml.bind.annotation.XmlAccessorType; import javax.xml.bind.annotation.XmlRootElement; import compbio.util.Util; /** * A collection of Limits * * @see Limit * @author pvtroshin * * @version 1.0 January 2010 * @param * executable type */ @XmlRootElement(name = "limits") @XmlAccessorType(XmlAccessType.FIELD) public class LimitsManager { String runnerClassName; List> limit; /** * * @return all limits defined for an executable T */ public List> getLimits() { return limit; } @Override public String toString() { String value = ""; if (null != limit) { for (Limit lim : limit) { value += lim.toString(); } } return value; } /** * * @param presetName * @return Limit defined for the executable T and presetName. If no limit is * defined for the presetName then default Limit is returned. If * presetName is empty or null than the default Limit will be * returned. If not limit defined for the type T than NULL will be * returned */ public Limit getLimitByName(String presetName) { if (limit == null) { return null; } if (Util.isEmpty(presetName)) { // return default limit return getDefaultLimit(); } for (Limit lim : limit) { String preset = lim.getPreset(); if (preset == null) { continue; } if (preset.equalsIgnoreCase(presetName)) { return lim; } } return null; } /** * * @return the default Limit for an executable type T */ public Limit getDefaultLimit() { for (Limit lim : limit) { if (lim.isDefault) { return lim; } } return null; } /** * Validate Limits * * @see Limit * @see Preset * @param presets * @throws ValidationException * if any of the Limit defined is found to be invalid. That is * when * * 1) No default limit is defined * * 2) More than 1 default limit is defined * * 3) Limit's preset name does not match any presets for type T */ public void validate(PresetManager presets) throws ValidationException { int defaults = 0; for (Limit lim : limit) { if (lim.isDefault) { defaults++; } } if (defaults == 0) { throw new ValidationException("Default limit is not set!"); } if (defaults > 1) { throw new ValidationException( "Default limit is set more than once!"); } if (presets != null) { for (Limit lim : limit) { lim.validate(); String presetName = lim.getPreset(); // skip "special" preset if (presetName != null && !presetName .equals(PresetManager.LOCAL_ENGINE_LIMIT_PRESET)) { Preset preset = presets.getPresetByName(presetName); if (preset == null) { throw new ValidationException("Preset " + presetName + " is not found!"); } } } } } }