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Emailtcnofoegbu@dundee.ac.uk
DescriptionFER_CAPAN_1-144
DateWed Jan 4 12:02:18 GMT 2017
Unique Job ID56da5616b4559c93
SequenceMASVSATMIS ... Download FASTA
Job Typenormal
Job Expiry

Summary 

Top model
Image coloured by rainbow N → C terminus
Model dimensions (Å):X:32.887 Y:28.173 Z:33.551
Model (left) based on template c4n58A_
Top template information
PDB header:hydrolase
Chain: A: PDB Molecule:pectocin m2;
PDBTitle: crystal structure of pectocin m2 at 1.86 angstroms
Confidence and coverage
Confidence:100.0% Coverage: 65%
93 residues ( 65% of your sequence) have been modelled with 100.0% confidence by the single highest scoring template.
Additional confident templates have been detected (see Domain analysis) which cover other regions of your sequence.
128 residues ( 89%) could be modelled at >90% confidence using multiple-templates.
You may wish to try resubmitting your sequence in "intensive" mode to model more of your sequence.
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Sequence analysis 

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Secondary structure and disorder prediction [Show] 

Domain analysis [Show] 

Detailed template information [Hide] 

 

#
Template Alignment Coverage3D Model Confidence
% i.d. Template Information
1c4n58A_
100.0 54
PDB header:hydrolase
Chain: A: PDB Molecule:pectocin m2;
PDBTitle: crystal structure of pectocin m2 at 1.86 angstroms
2 d1a70a_
100.0 71
Fold:beta-Grasp (ubiquitin-like)
Superfamily:2Fe-2S ferredoxin-like
Family:2Fe-2S ferredoxin-related
3d1offa_
100.0 73
Fold:beta-Grasp (ubiquitin-like)
Superfamily:2Fe-2S ferredoxin-like
Family:2Fe-2S ferredoxin-related
4d1frra_
99.9 62
Fold:beta-Grasp (ubiquitin-like)
Superfamily:2Fe-2S ferredoxin-like
Family:2Fe-2S ferredoxin-related
5d1pfda_
99.9 70
Fold:beta-Grasp (ubiquitin-like)
Superfamily:2Fe-2S ferredoxin-like
Family:2Fe-2S ferredoxin-related
6d1frda_
99.9 50
Fold:beta-Grasp (ubiquitin-like)
Superfamily:2Fe-2S ferredoxin-like
Family:2Fe-2S ferredoxin-related
7d1fxia_
99.9 62
Fold:beta-Grasp (ubiquitin-like)
Superfamily:2Fe-2S ferredoxin-like
Family:2Fe-2S ferredoxin-related
8d1gaqb_
99.9 71
Fold:beta-Grasp (ubiquitin-like)
Superfamily:2Fe-2S ferredoxin-like
Family:2Fe-2S ferredoxin-related
9d1iuea_
99.9 48
Fold:beta-Grasp (ubiquitin-like)
Superfamily:2Fe-2S ferredoxin-like
Family:2Fe-2S ferredoxin-related
10d1awda_
99.9 68
Fold:beta-Grasp (ubiquitin-like)
Superfamily:2Fe-2S ferredoxin-like
Family:2Fe-2S ferredoxin-related
11d1wria_
99.9 59
Fold:beta-Grasp (ubiquitin-like)
Superfamily:2Fe-2S ferredoxin-like
Family:2Fe-2S ferredoxin-related
12d1czpa_
99.9 64
Fold:beta-Grasp (ubiquitin-like)
Superfamily:2Fe-2S ferredoxin-like
Family:2Fe-2S ferredoxin-related
13d2cjoa_
99.9 63
Fold:beta-Grasp (ubiquitin-like)
Superfamily:2Fe-2S ferredoxin-like
Family:2Fe-2S ferredoxin-related
14d4fxca_
99.9 64
Fold:beta-Grasp (ubiquitin-like)
Superfamily:2Fe-2S ferredoxin-like
Family:2Fe-2S ferredoxin-related
15c4itkA_
99.9 57
PDB header:electron transport
Chain: A: PDB Molecule:apoferredoxin;
PDBTitle: the structure of c.reinhardtii ferredoxin 2
16c1krhA_
99.9 25
PDB header:oxidoreductase
Chain: A: PDB Molecule:benzoate 1,2-dioxygenase reductase;
PDBTitle: x-ray stucture of benzoate dioxygenase reductase
17d1krha3
99.9 24
Fold:beta-Grasp (ubiquitin-like)
Superfamily:2Fe-2S ferredoxin-like
Family:2Fe-2S ferredoxin domains from multidomain proteins
18d1jq4a_
99.9 29
Fold:beta-Grasp (ubiquitin-like)
Superfamily:2Fe-2S ferredoxin-like
Family:2Fe-2S ferredoxin domains from multidomain proteins
19c4wqmA_
99.9 28
PDB header:oxidoreductase
Chain: A: PDB Molecule:toluene-4-monooxygenase electron transfer component;
PDBTitle: structure of the toluene 4-monooxygenase nadh oxidoreductase t4mof,2 k270s k271s variant
20c2piaA_
99.9 22
PDB header:reductase
Chain: A: PDB Molecule:phthalate dioxygenase reductase;
PDBTitle: phthalate dioxygenase reductase: a modular structure for2 electron transfer from pyridine nucleotides to [2fe-2s]
21d2piaa3
not modelled 99.9 25
Fold:beta-Grasp (ubiquitin-like)
Superfamily:2Fe-2S ferredoxin-like
Family:2Fe-2S ferredoxin domains from multidomain proteins
22d1doia_
not modelled 99.9 34
Fold:beta-Grasp (ubiquitin-like)
Superfamily:2Fe-2S ferredoxin-like
Family:2Fe-2S ferredoxin-related
23d1e0za_
not modelled 99.8 34
Fold:beta-Grasp (ubiquitin-like)
Superfamily:2Fe-2S ferredoxin-like
Family:2Fe-2S ferredoxin-related
24c4p6vF_
not modelled 99.8 22
PDB header:oxidoreductase
Chain: F: PDB Molecule:na(+)-translocating nadh-quinone reductase subunit f;
PDBTitle: crystal structure of the na+-translocating nadh: ubiquinone2 oxidoreductase from vibrio cholerae
25c3zyyX_
not modelled 99.8 29
PDB header:iron-sulfur-binding protein
Chain: X: PDB Molecule:iron-sulfur cluster binding protein;
PDBTitle: reductive activator for corrinoid,iron-sulfur protein
26c5frtC_
not modelled 99.8 26
PDB header:oxidoreductase
Chain: C: PDB Molecule:dimeric (2fe-2s) protein;
PDBTitle: structure of the fesii (shethna) protein of azotobacter vinelandii
27c3ah7A_
not modelled 99.7 22
PDB header:metal binding protein
Chain: A: PDB Molecule:[2fe-2s]ferredoxin;
PDBTitle: crystal structure of the isc-like [2fe-2s] ferredoxin (fdxb) from2 pseudomonas putida jcm 20004
28c2y5cB_
not modelled 99.7 20
PDB header:electron transport
Chain: B: PDB Molecule:adrenodoxin-like protein, mitochondrial;
PDBTitle: structure of human ferredoxin 2 (fdx2)in complex with 2fe2s2 cluster
29c2mjdA_
not modelled 99.7 25
PDB header:metal binding protein
Chain: A: PDB Molecule:adrenodoxin homolog, mitochondrial;
PDBTitle: oxidized yeast adrenodoxin homolog 1
30c2wlbB_
not modelled 99.7 28
PDB header:electron transport
Chain: B: PDB Molecule:electron transfer protein 1, mitochondrial;
PDBTitle: adrenodoxin-like ferredoxin etp1fd(516-618) of2 schizosaccharomyces pombe mitochondria
31d1i7ha_
not modelled 99.6 27
Fold:beta-Grasp (ubiquitin-like)
Superfamily:2Fe-2S ferredoxin-like
Family:2Fe-2S ferredoxin-related
32d1e9ma_
not modelled 99.6 20
Fold:beta-Grasp (ubiquitin-like)
Superfamily:2Fe-2S ferredoxin-like
Family:2Fe-2S ferredoxin-related
33c3lxfC_
not modelled 99.6 24
PDB header:metal binding protein
Chain: C: PDB Molecule:ferredoxin;
PDBTitle: crystal structure of [2fe-2s] ferredoxin arx from novosphingobium2 aromaticivorans
34c2mj3A_
not modelled 99.6 21
PDB header:metal binding protein
Chain: A: PDB Molecule:iron-sulfur cluster binding protein;
PDBTitle: backbone 1h, 13c, and 15n chemical shift assignments and structure of2 iron-sulfur cluster binding protein from ehrlichia chaffeensis
35d1xlqa1
not modelled 99.6 24
Fold:beta-Grasp (ubiquitin-like)
Superfamily:2Fe-2S ferredoxin-like
Family:2Fe-2S ferredoxin-related
36c4ltuB_
not modelled 99.6 19
PDB header:electron transport
Chain: B: PDB Molecule:ferredoxin;
PDBTitle: crystal structure of ferredoxin from rhodopseudomonas palustris haa2
37d2bt6a1
not modelled 99.6 19
Fold:beta-Grasp (ubiquitin-like)
Superfamily:2Fe-2S ferredoxin-like
Family:2Fe-2S ferredoxin-related
38d1l5pa_
not modelled 99.6 16
Fold:beta-Grasp (ubiquitin-like)
Superfamily:2Fe-2S ferredoxin-like
Family:2Fe-2S ferredoxin-related
39c3huiA_
not modelled 99.6 14
PDB header:electron transport
Chain: A: PDB Molecule:ferredoxin;
PDBTitle: crystal structure of the mutant a105r of [2fe-2s] ferredoxin in the2 class i cyp199a2 system from rhodopseudomonas palustris
40c3p1mG_
not modelled 99.5 20
PDB header:electron transport
Chain: G: PDB Molecule:adrenodoxin, mitochondrial;
PDBTitle: crystal structure of human ferredoxin-1 (fdx1) in complex with iron-2 sulfur cluster
41d1b9ra_
not modelled 99.5 22
Fold:beta-Grasp (ubiquitin-like)
Superfamily:2Fe-2S ferredoxin-like
Family:2Fe-2S ferredoxin-related
42c1l6vA_
not modelled 99.2 19
PDB header:electron transport
Chain: A: PDB Molecule:adrenodoxin 1;
PDBTitle: structure of reduced bovine adrenodoxin
43d2fug33
not modelled 98.9 23
Fold:beta-Grasp (ubiquitin-like)
Superfamily:2Fe-2S ferredoxin-like
Family:2Fe-2S ferredoxin domains from multidomain proteins
44d3c8ya2
not modelled 98.7 26
Fold:beta-Grasp (ubiquitin-like)
Superfamily:2Fe-2S ferredoxin-like
Family:2Fe-2S ferredoxin domains from multidomain proteins
45c1c4cA_
not modelled 98.6 26
PDB header:oxidoreductase
Chain: A: PDB Molecule:protein (fe-only hydrogenase);
PDBTitle: binding of exogenously added carbon monoxide at the active2 site of the fe-only hydrogenase (cpi) from clostridium3 pasteurianum
46c2fugC_
not modelled 98.3 25
PDB header:oxidoreductase
Chain: C: PDB Molecule:nadh-quinone oxidoreductase chain 3;
PDBTitle: crystal structure of the hydrophilic domain of respiratory complex i2 from thermus thermophilus
47d1t3qa2
not modelled 98.3 23
Fold:beta-Grasp (ubiquitin-like)
Superfamily:2Fe-2S ferredoxin-like
Family:2Fe-2S ferredoxin domains from multidomain proteins
48d1n62a2
not modelled 98.2 14
Fold:beta-Grasp (ubiquitin-like)
Superfamily:2Fe-2S ferredoxin-like
Family:2Fe-2S ferredoxin domains from multidomain proteins
49d1vlba2
not modelled 98.2 13
Fold:beta-Grasp (ubiquitin-like)
Superfamily:2Fe-2S ferredoxin-like
Family:2Fe-2S ferredoxin domains from multidomain proteins
50d1ffva2
not modelled 98.1 12
Fold:beta-Grasp (ubiquitin-like)
Superfamily:2Fe-2S ferredoxin-like
Family:2Fe-2S ferredoxin domains from multidomain proteins
51d1dgja2
not modelled 98.1 17
Fold:beta-Grasp (ubiquitin-like)
Superfamily:2Fe-2S ferredoxin-like
Family:2Fe-2S ferredoxin domains from multidomain proteins
52c3hrdH_
not modelled 98.0 21
PDB header:oxidoreductase
Chain: H: PDB Molecule:nicotinate dehydrogenase small fes subunit;
PDBTitle: crystal structure of nicotinate dehydrogenase
53c1t3qD_
not modelled 98.0 23
PDB header:oxidoreductase
Chain: D: PDB Molecule:quinoline 2-oxidoreductase small subunit;
PDBTitle: crystal structure of quinoline 2-oxidoreductase from pseudomonas2 putida 86
54d1rm6c2
not modelled 98.0 24
Fold:beta-Grasp (ubiquitin-like)
Superfamily:2Fe-2S ferredoxin-like
Family:2Fe-2S ferredoxin domains from multidomain proteins
55c1rm6F_
not modelled 97.9 27
PDB header:oxidoreductase
Chain: F: PDB Molecule:4-hydroxybenzoyl-coa reductase gamma subunit;
PDBTitle: structure of 4-hydroxybenzoyl-coa reductase from thauera2 aromatica
56c4zohC_
not modelled 97.9 17
PDB header:oxidoreductase
Chain: C: PDB Molecule:putative oxidoreductase iron-sulfur subunit;
PDBTitle: crystal structure of glyceraldehyde oxidoreductase
57c1n60D_
not modelled 97.9 14
PDB header:oxidoreductase
Chain: D: PDB Molecule:carbon monoxide dehydrogenase small chain;
PDBTitle: crystal structure of the cu,mo-co dehydrogenase (codh); cyanide-2 inactivated form
58d2bs2b2
not modelled 97.8 26
Fold:beta-Grasp (ubiquitin-like)
Superfamily:2Fe-2S ferredoxin-like
Family:2Fe-2S ferredoxin domains from multidomain proteins
59c1ffuA_
not modelled 97.8 13
PDB header:hydrolase
Chain: A: PDB Molecule:cuts, iron-sulfur protein of carbon monoxide
PDBTitle: carbon monoxide dehydrogenase from hydrogenophaga2 pseudoflava which lacks the mo-pyranopterin moiety of the3 molybdenum cofactor
60d1kf6b2
not modelled 97.7 23
Fold:beta-Grasp (ubiquitin-like)
Superfamily:2Fe-2S ferredoxin-like
Family:2Fe-2S ferredoxin domains from multidomain proteins
61c2bs2E_
not modelled 97.7 26
PDB header:oxidoreductase
Chain: E: PDB Molecule:quinol-fumarate reductase iron-sulfur subunit b;
PDBTitle: quinol:fumarate reductase from wolinella succinogenes
62c2h89B_
not modelled 97.5 33
PDB header:oxidoreductase
Chain: B: PDB Molecule:succinate dehydrogenase ip subunit;
PDBTitle: avian respiratory complex ii with malonate bound
63c2b76N_
not modelled 97.5 28
PDB header:oxidoreductase
Chain: N: PDB Molecule:fumarate reductase iron-sulfur protein;
PDBTitle: e. coli quinol fumarate reductase frda e49q mutation
64d1jroa2
not modelled 97.4 15
Fold:beta-Grasp (ubiquitin-like)
Superfamily:2Fe-2S ferredoxin-like
Family:2Fe-2S ferredoxin domains from multidomain proteins
65c2w3rG_
not modelled 97.3 15
PDB header:oxidoreductase
Chain: G: PDB Molecule:xanthine dehydrogenase;
PDBTitle: crystal structure of xanthine dehydrogenase (desulfo form)2 from rhodobacter capsulatus in complex with hypoxanthine
66c3vrbF_
not modelled 97.3 31
PDB header:oxidoreductase/oxidoreductase inhibitor
Chain: F: PDB Molecule:iron-sulfur subunit of succinate dehydrogenase;
PDBTitle: mitochondrial rhodoquinol-fumarate reductase from the parasitic2 nematode ascaris suum with the specific inhibitor flutolanil and3 substrate fumarate
67d1v97a2
not modelled 97.3 13
Fold:beta-Grasp (ubiquitin-like)
Superfamily:2Fe-2S ferredoxin-like
Family:2Fe-2S ferredoxin domains from multidomain proteins
68d1nekb2
not modelled 97.3 23
Fold:beta-Grasp (ubiquitin-like)
Superfamily:2Fe-2S ferredoxin-like
Family:2Fe-2S ferredoxin domains from multidomain proteins
69c1nekB_
not modelled 97.1 26
PDB header:oxidoreductase/electron transport
Chain: B: PDB Molecule:succinate dehydrogenase iron-sulfur protein;
PDBTitle: complex ii (succinate dehydrogenase) from e. coli with2 ubiquinone bound
70c3b9jI_
not modelled 97.1 13
PDB header:oxidoreductase
Chain: I: PDB Molecule:xanthine oxidase;
PDBTitle: structure of xanthine oxidase with 2-hydroxy-6-methylpurine
71c1vlbA_
not modelled 97.1 13
PDB header:oxidoreductase
Chain: A: PDB Molecule:aldehyde oxidoreductase;
PDBTitle: structure refinement of the aldehyde oxidoreductase from2 desulfovibrio gigas at 1.28 a
72c3eubJ_
not modelled 97.0 13
PDB header:oxidoreductase
Chain: J: PDB Molecule:xanthine dehydrogenase/oxidase;
PDBTitle: crystal structure of desulfo-xanthine oxidase with xanthine
73c1dgjA_
not modelled 96.5 17
PDB header:oxidoreductase
Chain: A: PDB Molecule:aldehyde oxidoreductase;
PDBTitle: crystal structure of the aldehyde oxidoreductase from2 desulfovibrio desulfuricans atcc 27774
74c3zyvA_
not modelled 96.4 17
PDB header:oxidoreductase
Chain: A: PDB Molecule:aox3;
PDBTitle: crystal structure of the mouse liver aldehyde oxidase 3 (maox3)
75c4uhxA_
not modelled 96.4 15
PDB header:oxidoreductase
Chain: A: PDB Molecule:aldehyde oxidase;
PDBTitle: human aldehyde oxidase in complex with phthalazine and thioridazine
76c1wygA_
not modelled 95.6 15
PDB header:oxidoreductase
Chain: A: PDB Molecule:xanthine dehydrogenase/oxidase;
PDBTitle: crystal structure of a rat xanthine dehydrogenase triple mutant2 (c535a, c992r and c1324s)
77c1ep3B_
not modelled 95.4 15
PDB header:oxidoreductase
Chain: B: PDB Molecule:dihydroorotate dehydrogenase b (pyrk subunit);
PDBTitle: crystal structure of lactococcus lactis dihydroorotate dehydrogenase2 b. data collected under cryogenic conditions.
78d1ep3b2
not modelled 93.8 15
Fold:Ferredoxin reductase-like, C-terminal NADP-linked domain
Superfamily:Ferredoxin reductase-like, C-terminal NADP-linked domain
Family:Dihydroorotate dehydrogenase B, PyrK subunit
79c4ylfA_
not modelled 93.3 26
PDB header:oxidoreductase
Chain: A: PDB Molecule:dihydroorotate dehydrogenase b (nad(+)), electron transfer
PDBTitle: insights into flavin-based electron bifurcation via the nadh-dependent2 reduced ferredoxin-nadp oxidoreductase structure
80c1x31A_
not modelled 53.6 9
PDB header:oxidoreductase
Chain: A: PDB Molecule:sarcosine oxidase alpha subunit;
PDBTitle: crystal structure of heterotetrameric sarcosine oxidase from2 corynebacterium sp. u-96
81d2hj1a1
not modelled 50.0 10
Fold:beta-Grasp (ubiquitin-like)
Superfamily:MoaD/ThiS
Family:HI0395-like
82c2hj1A_
not modelled 50.0 10
PDB header:structural genomics, unknown function
Chain: A: PDB Molecule:hypothetical protein;
PDBTitle: crystal structure of a 3d domain-swapped dimer of protein hi0395 from2 haemophilus influenzae
83c2kmmA_
not modelled 44.8 31
PDB header:hydrolase
Chain: A: PDB Molecule:guanosine-3',5'-bis(diphosphate) 3'-
PDBTitle: solution nmr structure of the tgs domain of pg1808 from2 porphyromonas gingivalis. northeast structural genomics3 consortium target pgr122a (418-481)
84d1wx8a1
not modelled 36.2 21
Fold:beta-Grasp (ubiquitin-like)
Superfamily:Ubiquitin-like
Family:Ubiquitin-related
85c3hvzB_
not modelled 35.4 20
PDB header:structural genomics, unknown function
Chain: B: PDB Molecule:uncharacterized protein;
PDBTitle: crystal structure of the tgs domain of the clolep_03100 protein from2 clostridium leptum, northeast structural genomics consortium target3 qlr13a
86d1tkea1
not modelled 29.8 26
Fold:beta-Grasp (ubiquitin-like)
Superfamily:TGS-like
Family:TGS domain
87d1j8ca_
not modelled 24.2 19
Fold:beta-Grasp (ubiquitin-like)
Superfamily:Ubiquitin-like
Family:Ubiquitin-related
88d1wxma1
not modelled 22.5 19
Fold:beta-Grasp (ubiquitin-like)
Superfamily:Ubiquitin-like
Family:Ras-binding domain, RBD
89d2al3a1
not modelled 22.3 19
Fold:beta-Grasp (ubiquitin-like)
Superfamily:Ubiquitin-like
Family:UBX domain
90d2bwfa1
not modelled 18.7 12
Fold:beta-Grasp (ubiquitin-like)
Superfamily:Ubiquitin-like
Family:Ubiquitin-related
91c1feoA_
not modelled 17.4 63
PDB header:toxin
Chain: A: PDB Molecule:omega-conotoxin mviia-gly;
PDBTitle: solution structure of omega-conotoxin mviia with c-terminal2 gly
92c1wwtA_
not modelled 16.6 17
PDB header:ligase
Chain: A: PDB Molecule:threonyl-trna synthetase, cytoplasmic;
PDBTitle: solution structure of the tgs domain from human threonyl-2 trna synthetase
93d1nyra2
not modelled 15.6 18
Fold:beta-Grasp (ubiquitin-like)
Superfamily:TGS-like
Family:TGS domain
94d2vv5a2
not modelled 15.3 36
Fold:Ferredoxin-like
Superfamily:Mechanosensitive channel protein MscS (YggB), C-terminal domain
Family:Mechanosensitive channel protein MscS (YggB), C-terminal domain
95c2kanA_
not modelled 14.2 8
PDB header:structural genomics, unknown function
Chain: A: PDB Molecule:uncharacterized protein ar3433a;
PDBTitle: solution nmr structure of ubiquitin-like domain of2 arabidopsis thaliana protein at2g32350. northeast3 structural genomics consortium target ar3433a
96c3j60I_
not modelled 14.0 26
PDB header:ribosome
Chain: I: PDB Molecule:40s ribosomal protein s8e;
PDBTitle: localization of the small subunit ribosomal proteins into a 5.5 a2 cryo-em map of triticum aestivum translating 80s ribosome
97d2znvb1
not modelled 13.9 17
Fold:beta-Grasp (ubiquitin-like)
Superfamily:Ubiquitin-like
Family:Ubiquitin-related
98d1rutx4
not modelled 13.8 31
Fold:Glucocorticoid receptor-like (DNA-binding domain)
Superfamily:Glucocorticoid receptor-like (DNA-binding domain)
Family:LIM domain
99c3bl5E_
not modelled 13.5 29
PDB header:hydrolase
Chain: E: PDB Molecule:queuosine biosynthesis protein quec;
PDBTitle: crystal structure of quec from bacillus subtilis: an enzyme2 involved in preq1 biosynthesis

Binding site prediction 

The top ranking model of your protein (c4n58A_ 100.0% confidence) has been submitted to the 3DLigandSite server to predict potential binding sites.

Results will appear here when complete