org.gradle.jvmargs=-Xmx1536m -Xms512m jalviewDir = . #JAVA_VERSION = 1.8 JAVA_VERSION = 11 source_dir = src #source_dir = utils/jalviewjs/test/src test_source_dir = test #test_source_dir = utils/jalviewjs/test/test JALVIEW_VERSION = DEVELOPMENT INSTALLATION = Source jalview_keystore = keys/.keystore jalview_keystore.pass = alignmentisfun jalview_key = jalview jalview_key.pass = alignmentisfun jalview_tsaurl = proxyPort = 80 proxyHost = sqid jalview_keyalg = SHA1withRSA jalview_keydig = SHA1 testngGroups = Functional testngExcludedGroups = j8libDir = j8lib j11libDir = j11lib resource_dir = resources help_parent_dir = help help_dir = help docDir = doc schemaDir = schemas classes_dir = classes examplesDir = examples clover = false use_clover = false cloverReportJVMHeap = 2g cloverReportJVMArgs = -Dfile.encoding=UTF-8 cloverReportHTMLOptions = cloverReportXMLOptions = cloverClassesDir = clover-classes cloverSourcesInstrDir = sources-instr packageDir = dist ARCHIVEDIR = outputJar = jalview.jar testOutputDir = tests utilsDir = utils build_properties_file = .build_properties application_codebase = *.jalview.org mainClass = jalview.bin.Jalview shadowJarMainClass = jalview.bin.Launcher launcherClass = jalview.bin.Jalview jalview_name = Jalview getdown_local = false getdown_website_dir = getdown/website getdown_resource_dir = resource #getdown_j11lib_dir = j11lib getdown_files_dir = getdown/files getdown_lib_dir = getdown/lib getdown_launcher = getdown-launcher.jar getdown_launcher_local = getdown-launcher-local.jar getdown_launcher_new = getdown-launcher-new.jar getdown_core = getdown/lib/getdown-core.jar getdown_build_properties = build_properties getdown_launch_jvl_name = channel_launch getdown_txt_allow_offline = true getdown_txt_max_concurrent_downloads = 10 # now got better defaults when not set #getdown_txt_jalview.jvmmempc = 90 # now got better defaults when not set #getdown_txt_jalview.jvmmemmax = 32G getdown_txt_multi_jvmarg = -Dgetdownappdir=%APPDIR% getdown_txt_strict_comments = true getdown_txt_ui.progress_sync_before_shown = true getdown_txt_ui.progress_sync_after_shown = false getdown_txt_ui.keep_on_top = true getdown_txt_ui.display_appbase = true getdown_txt_ui.display_version = true getdown_txt_ui.min_show_seconds = 6 getdown_txt_ui.background = FFFFFF getdown_txt_ui.background_image = utils/getdown/jalview_logo_background_getdown-640x480.png getdown_txt_ui.instant_background_image = utils/getdown/jalview_logo_background_getdown_instant-640x480.png getdown_txt_ui.error_background = utils/getdown/jalview_logo_background_getdown_error-640x480.png getdown_txt_ui.progress_image = utils/getdown/jalview_logo_background_getdown-progress.png getdown_txt_ui.icon = resources/images/JalviewLogo_Huge.png getdown_txt_ui.progress = 20, 440, 600, 22 getdown_txt_ui.progress_bar = AAAAFF getdown_txt_ui.progress_text = 000000 getdown_txt_ui.status = 20, 380, 600, 58 getdown_txt_ui.status_text = 000066 #getdown_txt_ui.text_shadow = FFFFFF getdown_txt_ui.install_error = https://www.jalview.org/faq/getdownerror getdown_txt_ui.mac_dock_icon = resources/images/jalview_logos.ico getdown_alt_java8_min_version = 01080000 getdown_alt_java8_max_version = 01089999 getdown_alt_java11_min_version = 11000000 getdown_alt_java11_max_version = #getdown_alt_java11_txt_multi_java_location = [windows-amd64] /getdown/jre/windows-jre11.jar,[linux-amd64] /getdown/jre/linux-jre11.tgz,[mac os x] /getdown/jre/macos-jre11.tgz #getdown_alt_java8_txt_multi_java_location = [windows-amd64] /getdown/jre/windows-jre1.8.tgz,[linux-amd64] /getdown/jre/linux-jre1.8.tgz,[mac os x] /getdown/jre/macos-jre1.8.tgz jre_installs_dir = ~/buildtools/jre j8libDir = j8lib j11libDir = j11lib j11modDir = j11mod j11modules = com.sun.istack.runtime,com.sun.xml.bind,com.sun.xml.fastinfoset,com.sun.xml.streambuffer,com.sun.xml.txw2,com.sun.xml.ws.policy,java.activation,java.annotation,java.base,java.compiler,java.datatransfer,java.desktop,java.logging,java.management,java.management.rmi,java.naming,java.prefs,java.rmi,java.scripting,java.security.sasl,java.sql,java.xml,java.xml.bind,java.xml.soap,java.xml.ws,javax.jws,jdk.httpserver,jdk.jsobject,jdk.unsupported,jdk.xml.dom,org.jvnet.mimepull,org.jvnet.staxex,javax.servlet.api,java.ws.rs install4j_home_dir = ~/buildtools/install4j8 install4j_copyright_message = ... install4j_bundle_id = org.jalview.jalview-desktop install4j_utils_dir = utils/install4j install4j_template = install4j8_template.install4j install4j_info_plist_file_associations = file_associations_auto-Info_plist.xml install4j_installer_file_associations = file_associations_auto-install4j8.xml #install4j_DMG_uninstaller_app_files = uninstall_old_jalview_files.xml install4j_build_dir = build/install4j install4j_media_types = windows,macosArchive,unixArchive,unixInstaller install4j_faster = false install4j_application_categories = Science;Biology;Java; install4j_release_win_application_id = 6595-2347-1923-0725 OSX_KEYSTORE = OSX_KEYPASS = JSIGN_SH = echo pandoc_exec = /usr/local/bin/pandoc,/usr/bin/pandoc dev = false CHANNEL=LOCAL getdown_channel_base = https://www.jalview.org/getdown getdown_app_dir_release = release getdown_app_dir_alt = alt getdown_app_dir_java = jre getdown_install_dir = install getdown_rsync_dest = /Volumes/jalview/docroot/getdown reportRsyncCommand = RUNRSYNC=false bamboo_channelbase = https://builds.jalview.org/browse bamboo_planKey = bamboo_getdown_channel_suffix = /latest/artifact/shared/getdown-channel eclipse_extra_jdt_prefs_file = utils/eclipse/org.eclipse.jdt.core.jalview.prefs eclipse_project_name = jalview eclipse_bin_dir = bin eclipse_debug = false # for developing in Eclipse as IDE, set this to automatically copy current swingjs/net.sf.j2s.core.jar to your dropins dir jalviewjs_eclipseIDE_auto_copy_j2s_plugin = false # Override this in a local.properties file jalviewjs_eclipse_root = ~/buildtools/eclipse/jee-2019-09 jalviewjs_eclipse_dropins_dir = utils/jalviewjs/eclipse/dropins jalviewjs_swingjs_zip = swingjs/SwingJS-site.zip jalviewjs_j2s_plugin = swingjs/net.sf.j2s.core.jar jalviewjs_libjs_dir = utils/jalviewjs/libjs jalviewjs_site_resource_dir = utils/jalviewjs/site-resources jalviewjs_classlists_dir = utils/jalviewjs/classlists jalviewjs_classlist_jalview = utils/jalviewjs/_j2sclasslist.txt jalviewjs_j2s_settings = .j2s #jalviewjs_eclipse_workspace = ~/tmp/eclipse-workspace # these 3 files/dirs found in build/jalviewjs jalviewjs_eclipse_tmp_dropins_dir = eclipse_dropins jalviewjs_eclipse_workspace_location_file = eclipse_workspace_location jalviewjs_site_dir = site # these dirs are subdirs of the site dir jalviewjs_swingjs_subdir = swingjs jalviewjs_j2s_subdir = swingjs/j2s jalviewjs_js_subdir = swingjs/js #jalviewjs_eclipseBuildArg = build jalviewjs_eclipse_build_arg = cleanBuild jalviewjs_server_port = 9001 jalviewjs_server_wait = 30 jalviewjs_server_resource = /jalview_bin_Jalview.html jalviewjs_core_name = _jalview jalviewjs_name = JalviewJS jalviewjs_core_key = core #jalviewjs_core_key = preloadCore j2s.compiler.status = enable #j2s.site.directory = null ## site defined from buildDir+'/jalviewjs/'+jalviewjs_site_dir #j2s.log.methods.declared = j2s_methods_declared.log #j2s.log.methods.called = j2s_methods_called.log #a semicolon-separated list of package-level file paths to be excluded j2s.excluded.paths = test;testng;util #j2s.include.tests = true #j2s.testing = null #j2s.compiler.nonqualified.packages = null #j2s.compiler.nonqualified.classes = null #j2s.compiler.mode = debug #a semicolon-separated list of package (foo.) or class (foo.bar) replacements to be made j2s.class.replacements = org.apache.log4j.->jalview.javascript.log4j. j2s.template.html = utils/jalviewjs/template.html j2s_coretemplate_html = utils/jalviewjs/coretemplate.html #output file name for logging methods declared - delete the file to regenerate a listing #j2s.prop.j2s.log.methods.declared=swingjs/methodsDeclared_csv #output file name for logging methods called - delete the file to regenerate a listing #j2s.prop.j2s.log.methods_called=swingjs/methodsCalled_csv #if set, every instance of methods called will be logged #otherwise, only the first call to a method will be logged #output will be comma-separated: called method,caller class #j2s.prop.j2s.log.all.calls=true jalviewjs_j2s_transpile_stdout = j2s-transpile.out #jalviewjs_j2s_stderr = j2s-transpile.err # all going into out jalviewjs_j2s_to_console = true jalviewjs_j2s_closure_stdout = j2s-closure.out testp=gradle.properties