Export

The alignment view can be printed using File→Print, or exported in a number of ways via the File→Export menu:

• HTML
  for viewing in a web browser
• PNG - a Portable Networks Graphics image
  For low quality diagrams and powerpoint presentations
• EPS - an Encapsulated Postscript Document
  For high quality diagrams and publications.

Tips for working with EPS Files

• The EPS file generated by jalview contains vector graphics which are directly editable in graphics applications such as Adobe Illustrator.
• When importing an EPS into to a Microsoft office document, a snapshot image of the file will be displayed which often looks blurred. Right-click the image and choose "Edit image." to convert it to word drawing objects which give a truer WYSIWIG representation.
• Mac OSX users will find that eps files are automatically converted into PDF files.