What's new ?
Jalview Version 2.2
Multiple views with different styles, colours, hidden regions for one alignment
Easily add, amend and delete sequence features
"Reload" alignment from File or URL to revert to original
"Save" to current filename or "Save As" to new filename
Set different text colour for dark or light background
Right align sequence ids
Set colour of lower case residues in a user defined colour scheme
Menu Rearrangements: New Format for alignment layout and Select for region selection.
Menu item accelerator keys added
Control-V pastes sequences to active window, Control-Shift-V pastes to a new window.
Raise/Minimise alignment and all associated windows from desktop window's window menu
Select and colour whole branches of a tree
'New Window' button on the 'Output to Text box' alignment output option to open a new alignment window after editing.
Issues Resolved
Optimisations for large alignments: faster multithreaded calculations and Undo/Redo system.
Remove empty columns - if empty columns exist at the end of the alignment bug fixed.
DAS feature fetching slowed down, doesn't overload DAS servers
DAS feature fetching can be cancelled
Correct display of > and < symbols for feature descriptions without explicit <html> tags.
Zoom working in PCA viewer
Sequence Descriptions retained after running a web service
See the Release History page for details of all new features and resolved issues.