--- version: 2.11.3.3 date: 2024-05-22 channel: "release" --- ## New Features - Left/Right justify the alignment or current selection (with Undo) - Minimum versions of Jalview's build toolchain are explicitly specified in doc/building.md ### development and deployment - timeout for test tasks to prevent hanging builds ## Issues Resolved - Secondary structure not available after dragging a 3D structure onto a sequence to associate it when 'Process secondary structure' flag is true in preferences - Clustal colourscheme documentation not consistent with implementation - Handles to adjust ID panel width or annotation panel height can be dragged out of the Alignment window - Trackpad scrolling not proportional to gesture velocity - Cannot output individual images of more than one structure view attached to one open alignment - --jvmempc and --jvmemmax don't work for jalview installed via conda or jar - User's default colour scheme is erroneously applied to alignments in Jalview projects opened via command line when no --colour argument supplied - Headless alignment export with structure annotations doesn't include secondary structure and temperature factor (Known defect since 2.11.3.0) - Uniprot record retrieval not working in JalviewJS (affects all versions) - bio.tools record version number updated - Miscellaneous patches to fix hangs in 2.11.3 test suite - Jalview archive build getdown doesn't include wrapper scripts ### New Known Issues - Protein structure derived annotation tracks not available as reference annotation unless 'add to alignment' preference is enabled - Enabling just "Add Secondary Structure" Structure preference when importing structure via CLI results in temperature factor being shown in alignment