/*  Bonnie Berger, David Wilson and Theodore Tonchev 1992  */
/*      C Header File.  modified Ethan Wolf 1995     */
/*  Defines the names of functions used in scscore.c.     */

#ifndef __scscore_h__
#define __scscore_h__ 1

#include "scconst.h"


/* Procedure Prototypes */

double getdlog(double num);

int calcgprobs(long freqs[AANUM], long totals, 
	      double probs[NUM_RES_TYPE]);

int calcgprobp(long freqp[AANUM][AANUM][POSNUM], 
	      long totalp[POSNUM],
	      double probp[NUM_RES_TYPE][NUM_RES_TYPE][POSNUM]);

int calcpprobs(long freqs[AANUM][POSNUM], long totals[POSNUM], 
	      double probs[NUM_RES_TYPE][POSNUM],
	       int ProlineFreeWin);


int calcpprobp(long freqp[AANUM][AANUM][POSNUM][POSNUM], 
	      long totalp[POSNUM][POSNUM],
	      double probs[NUM_RES_TYPE][POSNUM],
	      double probp[NUM_RES_TYPE][NUM_RES_TYPE][POSNUM][POSNUM],
	      int ProlineFreeWin);


int scorestock(char seq[MAXSEQLEN], int seqlen,
	       double scores[MAXSEQLEN][POSNUM],
	       char offsets[MAXSEQLEN],
	       double *maxscore, int ProlineFreeWin, int stockstock);

int scoreseq(char seq[MAXSEQLEN], int seqlen,
	     double scores[MAXSEQLEN],
	     char offsets[MAXSEQLEN],
	     double *maxscore);


int scseqadj(char lib[MAXFUNCTNUM],
	     char seq[MAXSEQLEN], int seqlen,
	     double gscores[MAXSEQLEN][POSNUM],
	     char goffsets[MAXSEQLEN],
	     double *maxscore, int mode, int differentiator);

#endif   /* __scscore_h__ */

/*       End of Code       */