pairwise: pairwise.h Source File

00001 #include <stdlib.h>
00002 
00003 struct fasta {
00004         char *id;
00005         char *seq;
00006         int start;
00007         int end;
00008         int numres;
00009 };
00010 
00011 void fatal_error (char *message);
00012 FILE * xfopen (const char *path, const char *mode);
00013 void * xmalloc (size_t size);
00014 void * xrealloc (void *ptr, size_t size);
00015 int diff (char a, char b);
00016 float pairwise (struct fasta *a, struct fasta *b);
00017 void populate (struct fasta *a);
00018 void check_length (struct fasta **array);
00019 struct fasta ** read_fasta (FILE *fh);