/*
 * Jalview - A Sequence Alignment Editor and Viewer ($$Version-Rel$$)
 * Copyright (C) $$Year-Rel$$ The Jalview Authors
 * 
 * This file is part of Jalview.
 * 
 * Jalview is free software: you can redistribute it and/or
 * modify it under the terms of the GNU General Public License 
 * as published by the Free Software Foundation, either version 3
 * of the License, or (at your option) any later version.
 *  
 * Jalview is distributed in the hope that it will be useful, but 
 * WITHOUT ANY WARRANTY; without even the implied warranty 
 * of MERCHANTABILITY or FITNESS FOR A PARTICULAR 
 * PURPOSE.  See the GNU General Public License for more details.
 * 
 * You should have received a copy of the GNU General Public License
 * along with Jalview.  If not, see <http://www.gnu.org/licenses/>.
 * The Jalview Authors are detailed in the 'AUTHORS' file.
 */
package jalview.appletgui;

import jalview.api.AlignmentViewPanel;
import jalview.datamodel.PDBEntry;
import jalview.datamodel.SequenceI;
//import jalview.ext.jmol.JalviewJmolBinding;
import jalview.structure.StructureSelectionManager;

import java.awt.Container;
import java.util.Map;

import javajs.awt.Dimension;

//import org.jmol.api.JmolAppConsoleInterface;
//import org.jmol.console.AppletConsole;
//import org.jmol.java.BS;

class AppletJmolBinding //extends JalviewJmolBinding
{

//  /**
//   * Window that contains the bound Jmol instance
//   */
//  private AppletJmol appletJmolBinding;
//
//  public AppletJmolBinding(AppletJmol appletJmol,
//          StructureSelectionManager sSm, PDBEntry[] pdbentry,
//          SequenceI[][] seq, String[][] chains, String protocol)
//  {
//    super(sSm, pdbentry, seq, chains, protocol);
//    appletJmolBinding = appletJmol;
//  }
//
//  @Override
//  public jalview.api.FeatureRenderer getFeatureRenderer(
//          AlignmentViewPanel alignment)
//  {
//    AlignmentPanel ap = (AlignmentPanel) alignment;
//    if (appletJmolBinding.ap.av.isShowSequenceFeatures())
//    {
//      if (appletJmolBinding.fr == null)
//      {
//        appletJmolBinding.fr = new jalview.appletgui.FeatureRenderer(
//                appletJmolBinding.ap.av);
//      }
//
//      appletJmolBinding.fr
//              .transferSettings(appletJmolBinding.ap.seqPanel.seqCanvas
//                      .getFeatureRenderer());
//    }
//
//    return appletJmolBinding.fr;
//  }
//
//  @Override
//  public jalview.api.SequenceRenderer getSequenceRenderer(
//          AlignmentViewPanel alignment)
//  {
//    return new SequenceRenderer(((AlignmentPanel) alignment).av);
//  }
//
//  @Override
//  public void sendConsoleEcho(String strEcho)
//  {
//    if (appletJmolBinding.scriptWindow == null)
//    {
//      appletJmolBinding.showConsole(true);
//    }
//
//    appletJmolBinding.history.append("\n" + strEcho);
//  }
//
//  @Override
//  public void sendConsoleMessage(String strStatus)
//  {
//    if (appletJmolBinding.history != null && strStatus != null
//            && !strStatus.equals("Script completed"))
//    {
//      appletJmolBinding.history.append("\n" + strStatus);
//    }
//  }
//
//  @Override
//  public void showUrl(String url, String target)
//  {
//    appletJmolBinding.ap.alignFrame.showURL(url, target);
//
//  }
//
//  @Override
//  public void refreshGUI()
//  {
//    appletJmolBinding.updateTitleAndMenus();
//  }
//
//  public void updateColours(Object source)
//  {
//    AlignmentPanel ap = (AlignmentPanel) source;
//    colourBySequence(ap);
//  }
//
//  public void showUrl(String url)
//  {
//    try
//    {
//      appletJmolBinding.ap.av.applet.getAppletContext().showDocument(
//              new java.net.URL(url), "jmol");
//    } catch (java.net.MalformedURLException ex)
//    {
//    }
//  }
//
//  public void newJmolPopup(boolean translateLocale, String menuName,
//          boolean asPopup)
//  {
//    // jmolpopup = new JmolAwtPopup(); // is this used?
//    // jmolpopup.jpiInitialize((viewer), menuName);
//  }
//
//  @Override
//  public void notifyScriptTermination(String strStatus, int msWalltime)
//  {
//    // do nothing.
//  }
//
//  public void selectionChanged(BS arg0)
//  {
//    // TODO Auto-generated method stub
//
//  }
//
//  @Override
//  public void refreshPdbEntries()
//  {
//    // noop
//  }
//
//  @Override
//  public void showConsole(boolean show)
//  {
//    appletJmolBinding.showConsole(show);
//  }
//
//  @Override
//  protected JmolAppConsoleInterface createJmolConsole(
//          Container consolePanel, String buttonsToShow)
//  {
//    JmolAppConsoleInterface appc = new AppletConsole();
//    appc.start(viewer);
//    return appc;
//  }
//
//  @Override
//  protected void releaseUIResources()
//  {
//    appletJmolBinding = null;
//    closeConsole();
//  }
//
//  @Override
//  public void releaseReferences(Object svl)
//  {
//  }
//
//  @Override
//  public Dimension resizeInnerPanel(String data)
//  {
//    // TODO Auto-generated method stub
//    return null;
//  }
//
//  @Override
//  public Map<String, Object> getJSpecViewProperty(String arg0)
//  {
//    // TODO Auto-generated method stub
//    return null;
//  }
}