/* * Jalview - A Sequence Alignment Editor and Viewer ($$Version-Rel$$) * Copyright (C) $$Year-Rel$$ The Jalview Authors * * This file is part of Jalview. * * Jalview is free software: you can redistribute it and/or * modify it under the terms of the GNU General Public License * as published by the Free Software Foundation, either version 3 * of the License, or (at your option) any later version. * * Jalview is distributed in the hope that it will be useful, but * WITHOUT ANY WARRANTY; without even the implied warranty * of MERCHANTABILITY or FITNESS FOR A PARTICULAR * PURPOSE. See the GNU General Public License for more details. * * You should have received a copy of the GNU General Public License * along with Jalview. If not, see . * The Jalview Authors are detailed in the 'AUTHORS' file. */ package jalview.appletgui; import jalview.viewmodel.OverviewDimensions; import java.awt.BorderLayout; import java.awt.Dimension; import java.awt.Panel; import java.awt.event.ComponentAdapter; import java.awt.event.ComponentEvent; import java.awt.event.MouseEvent; import java.awt.event.MouseListener; import java.awt.event.MouseMotionListener; public class OverviewPanel extends Panel implements Runnable, MouseMotionListener, MouseListener { private OverviewDimensions od; private OverviewCanvas oviewCanvas; private AlignViewport av; private AlignmentPanel ap; private boolean updateRunning = false; public OverviewPanel(AlignmentPanel alPanel) { this.av = alPanel.av; this.ap = alPanel; setLayout(null); od = new OverviewDimensions(av.getRanges(), (av.isShowAnnotation() && av.getSequenceConsensusHash() != null)); oviewCanvas = new OverviewCanvas(od, av); setLayout(new BorderLayout()); add(oviewCanvas, BorderLayout.CENTER); setSize(new Dimension(od.getWidth(), od.getHeight())); addComponentListener(new ComponentAdapter() { @Override public void componentResized(ComponentEvent evt) { if ((getWidth() != od.getWidth()) || (getHeight() != (od.getHeight()))) { updateOverviewImage(); } } }); addMouseMotionListener(this); addMouseListener(this); updateOverviewImage(); } @Override public void mouseEntered(MouseEvent evt) { } @Override public void mouseExited(MouseEvent evt) { } @Override public void mouseClicked(MouseEvent evt) { } @Override public void mouseMoved(MouseEvent evt) { } @Override public void mousePressed(MouseEvent evt) { mouseAction(evt); } @Override public void mouseReleased(MouseEvent evt) { mouseAction(evt); } @Override public void mouseDragged(MouseEvent evt) { mouseAction(evt); } private void mouseAction(MouseEvent evt) { od.updateViewportFromMouse(evt.getX(), evt.getY(), av.getAlignment() .getHiddenSequences(), av.getColumnSelection(), av .getRanges()); ap.setScrollValues(od.getScrollCol(), od.getScrollRow()); ap.paintAlignment(false); } /** * Updates the overview image when the related alignment panel is updated */ public void updateOverviewImage() { if ((getSize().width > 0) && (getSize().height > 0)) { od.setWidth(getSize().width); od.setHeight(getSize().height); } setSize(new Dimension(od.getWidth(), od.getHeight())); if (updateRunning) { oviewCanvas.restartDraw(); return; } updateRunning = true; Thread thread = new Thread(this); thread.start(); repaint(); updateRunning = false; } @Override public void run() { oviewCanvas.draw(av.isShowSequenceFeatures(), (av.isShowAnnotation() && av .getAlignmentConservationAnnotation() != null), ap); setBoxPosition(); } /** * Update the overview panel box when the associated alignment panel is * changed * */ public void setBoxPosition() { od.setBoxPosition(av.getAlignment() .getHiddenSequences(), av.getColumnSelection(), av.getRanges()); repaint(); } }