/*
* Jalview - A Sequence Alignment Editor and Viewer
* Copyright (C) 2005 AM Waterhouse, J Procter, G Barton, M Clamp, S Searle
*
* This program is free software; you can redistribute it and/or
* modify it under the terms of the GNU General Public License
* as published by the Free Software Foundation; either version 2
* of the License, or (at your option) any later version.
*
* This program is distributed in the hope that it will be useful,
* but WITHOUT ANY WARRANTY; without even the implied warranty of
* MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE.  See the
* GNU General Public License for more details.
*
* You should have received a copy of the GNU General Public License
* along with this program; if not, write to the Free Software
* Foundation, Inc., 51 Franklin Street, Fifth Floor, Boston, MA  02110-1301, USA
*/
package jalview.datamodel;

public class SequenceFeature {
    int begin;
    int end;
    String type;
    String description;
    String status;

    public SequenceFeature() {
    }

    public SequenceFeature(String type, int start, int end, String description,
        String status) {
        this.type = type;
        this.begin = start;
        this.end = end;
        this.description = description;
        this.status = status;
    }

    public int getStart() {
        return begin;
    }

    public int getEnd() {
        return end;
    }

    public String getType() {
        return type;
    }

    public String getDescription() {
        return description;
    }

    public String getStatus() {
        return status;
    }

    /*
          <xs:enumeration value="active site" />
    <xs:enumeration value="binding site" />
    <xs:enumeration value="calcium-binding region" />
    <xs:enumeration value="chain" />
    <xs:enumeration value="cross-link" />
    <xs:enumeration value="disulfide bond" />
    <xs:enumeration value="DNA-binding region" />
    <xs:enumeration value="domain" />
    <xs:enumeration value="glycosylation site" />
    <xs:enumeration value="helix" />
    <xs:enumeration value="initiator methionine" />
    <xs:enumeration value="lipid moiety-binding region" />
    <xs:enumeration value="metal ion-binding site" />
    <xs:enumeration value="modified residue" />
    <xs:enumeration value="mutagenesis site" />
    <xs:enumeration value="non-consecutive residues" />
    <xs:enumeration value="non-terminal residue" />
    <xs:enumeration value="nucleotide phosphate-binding region" />
    <xs:enumeration value="peptide" />
    <xs:enumeration value="propeptide" />
    <xs:enumeration value="repeat" />
    <xs:enumeration value="selenocysteine" />
    <xs:enumeration value="sequence conflict" />
    <xs:enumeration value="sequence variant" />
    <xs:enumeration value="signal peptide" />
    <xs:enumeration value="similar" />
    <xs:enumeration value="site" />
    <xs:enumeration value="splice variant" />
    <xs:enumeration value="strand" />
    <xs:enumeration value="thioether bond" />
    <xs:enumeration value="thiolester bond" />
    <xs:enumeration value="transit peptide" />
    <xs:enumeration value="transmembrane region" />
    <xs:enumeration value="turn" />
    <xs:enumeration value="unsure residue" />
    <xs:enumeration value="zinc finger region" />
    */
}