/* * Jalview - A Sequence Alignment Editor and Viewer ($$Version-Rel$$) * Copyright (C) $$Year-Rel$$ The Jalview Authors * * This file is part of Jalview. * * Jalview is free software: you can redistribute it and/or * modify it under the terms of the GNU General Public License * as published by the Free Software Foundation, either version 3 * of the License, or (at your option) any later version. * * Jalview is distributed in the hope that it will be useful, but * WITHOUT ANY WARRANTY; without even the implied warranty * of MERCHANTABILITY or FITNESS FOR A PARTICULAR * PURPOSE. See the GNU General Public License for more details. * * You should have received a copy of the GNU General Public License * along with Jalview. If not, see . * The Jalview Authors are detailed in the 'AUTHORS' file. */ package jalview.ext.ensembl; import jalview.bin.Cache; import jalview.datamodel.DBRefSource; /** * A class to behave much like EnsemblGene but referencing the ensemblgenomes * domain and data * * @author gmcarstairs * */ public class EnsemblGenomes extends EnsemblGene { /** * Constructor sets domain to rest.ensemblgenomes.org instead of the 'usual' * rest.ensembl.org */ public EnsemblGenomes() { super(); setDomain(Cache.getDefault(ENSEMBL_GENOMES_BASEURL, DEFAULT_ENSEMBL_GENOMES_BASEURL)); } @Override public String getDbName() { return DBRefSource.ENSEMBLGENOMES; } @Override public String getTestQuery() { /* * Salmonella gene, Uniprot Q8Z9G6, EMBLCDS CAD01290 */ return "CAD01290"; } @Override public String getDbSource() { return DBRefSource.ENSEMBLGENOMES; } }