package jalview.io; import jalview.datamodel.AlignmentI; import java.io.IOException; public interface FileFormatI { AlignmentFileReaderI getReader(FileParse source) throws IOException; AlignmentFileWriterI getWriter(AlignmentI al); boolean isComplexAlignFile(); /** * Answers the display name of the file format (as for example shown in menu * options). This name should not be locale (language) dependent. */ String getName(); /** * Returns a comma-separated list of file extensions associated with the * format * * @return */ String getExtensions(); /** * Answers true if the format is one that Jalview can read. This implies that * the format provides an implementation for getReader which can parse a data * source for sequence data. Readable formats are included in the options in * the open file dialogue. * * @return */ boolean isReadable(); /** * Answers true if the format is one that Jalview can write. This implies that * the object returned by getWriter provides an implementation of the print() * method. Writable formats are included in the options in the Save As file * dialogue, and the 'output to Textbox' option (if text format). * * @return */ boolean isWritable(); /** * Answers true if the format is one that Jalview can output as text, e.g. to * a text box * * @return */ boolean isTextFormat(); /** * Answers true if the file format is one that provides 3D structure data * * @return */ boolean isStructureFile(); }