package jalview.javascript; import java.util.ArrayList; import java.util.Enumeration; import jalview.appletgui.AlignFrame; import jalview.appletgui.AlignViewport; import jalview.bin.JalviewLite; import jalview.datamodel.ColumnSelection; import jalview.datamodel.SequenceGroup; import jalview.structure.SelectionSource; import netscape.javascript.JSObject; public class JsSelectionSender implements jalview.structure.SelectionListener, JsCallBack { JalviewLite jvlite; AlignFrame _af; String _listener; public JsSelectionSender(JalviewLite jvlite, AlignFrame af, String listener) { this.jvlite = jvlite; _af = af; _listener = listener; } @Override public void selection(SequenceGroup seqsel, ColumnSelection colsel, SelectionSource source) { // System.err.println("Testing selection event relay to jsfunction:"+_listener); try { String setid = ""; String viewid = ""; AlignFrame src = _af; // filter events if necessary if (source instanceof AlignViewport) { if (_af != null && !_af.alignPanel.av.getSequenceSetId().equals( ((AlignViewport) source).getSequenceSetId())) { return; } jalview.appletgui.AlignmentPanel[] aps = jalview.appletgui.PaintRefresher .getAssociatedPanels(setid = ((AlignViewport) source) .getSequenceSetId()); for (int a = 0; a < aps.length; a++) { if (aps[a].av == source) { src = aps[a].alignFrame; } } } else { // unhandled! System.err.println("Unhandled selection source !"); return; } JSObject jsoWindow = JSObject.getWindow(jvlite); String[] seqs = new String[] {}; String[] cols = new String[] {}; int strt = 0, end = src.alignPanel.av.getAlignment().getWidth(); if (seqsel != null && seqsel.getSize() > 0) { seqs = new String[seqsel.getSize()]; for (int i = 0; i < seqs.length; i++) { seqs[i] = seqsel.getSequenceAt(i).getName(); } if (strt < seqsel.getStartRes()) { strt = seqsel.getStartRes(); } if (end > seqsel.getEndRes()) { end = seqsel.getEndRes(); } } if (colsel != null && colsel.size() > 0) { cols = new String[colsel.getSelected().size()]; int d = 0, r = -1; for (int i = 0; i < cols.length; i++) { cols[i] = ""+(1+((Integer)colsel.getSelected().elementAt(i)).intValue()); } } else { if (seqsel != null && seqsel.getSize() > 0) { // send a valid range, otherwise we send the empty selection cols = new String[2]; cols[0] = "" + (1 + strt) + "-" + (1 + end); } ; } System.err.println("Relaying selection to jsfunction:" + _listener); jsoWindow.call( _listener, new Object[] { src, setid, jvlite.arrayToSeparatorList(seqs), jvlite.arrayToSeparatorList(cols) }); } catch (Exception ex) { System.err .println("Jalview Javascript exec error: Couldn't send selection message using function '" + _listener + "'"); if (ex instanceof netscape.javascript.JSException) { System.err.println("Javascript Exception: "+((netscape.javascript.JSException)ex).getMessage()); } else { ex.printStackTrace(); }; } } @Override public AlignFrame getAlignFrame() { return _af; } @Override public String getListenerFunction() { return _listener; } }