/* * Jalview - A Sequence Alignment Editor and Viewer ($$Version-Rel$$) * Copyright (C) $$Year-Rel$$ The Jalview Authors * * This file is part of Jalview. * * Jalview is free software: you can redistribute it and/or * modify it under the terms of the GNU General Public License * as published by the Free Software Foundation, either version 3 * of the License, or (at your option) any later version. * * Jalview is distributed in the hope that it will be useful, but * WITHOUT ANY WARRANTY; without even the implied warranty * of MERCHANTABILITY or FITNESS FOR A PARTICULAR * PURPOSE. See the GNU General Public License for more details. * * You should have received a copy of the GNU General Public License * along with Jalview. If not, see . * The Jalview Authors are detailed in the 'AUTHORS' file. */ package jalview.jbgui; import jalview.datamodel.AlignmentI; import jalview.io.DataSourceType; import jalview.io.FileFormat; import jalview.io.FormatAdapter; import jalview.io.cache.JvCacheableInputBox; import jalview.util.MessageManager; import java.awt.BorderLayout; import java.awt.Dimension; import java.awt.Font; import java.awt.GridLayout; import java.awt.Insets; import java.awt.event.ActionEvent; import java.awt.event.KeyEvent; import javax.swing.JButton; import javax.swing.JCheckBox; import javax.swing.JLabel; import javax.swing.JPanel; import javax.swing.SwingConstants; import javax.swing.SwingUtilities; import javax.swing.event.CaretEvent; import javax.swing.event.CaretListener; import javax.swing.text.JTextComponent; public class GFinder extends JPanel { private static final java.awt.Font VERDANA_12 = new java.awt.Font("Verdana", 0, 12); private static final String FINDER_CACHE_KEY = "CACHE.FINDER"; protected JButton createFeatures = new JButton(); protected JvCacheableInputBox searchBox = new JvCacheableInputBox<>( getCacheKey()); protected JCheckBox caseSensitive = new JCheckBox(); protected JCheckBox searchDescription = new JCheckBox(); public GFinder() { try { jbInit(); } catch (Exception e) { e.printStackTrace(); } } private void jbInit() throws Exception { BorderLayout mainBorderLayout = new BorderLayout(); this.setLayout(mainBorderLayout); mainBorderLayout.setHgap(5); mainBorderLayout.setVgap(5); JLabel jLabelFind = new JLabel(MessageManager.getString("label.find")); jLabelFind.setFont(VERDANA_12); JButton findAll = new JButton( MessageManager.getString("action.find_all")); findAll.setFont(VERDANA_12); findAll.addActionListener(new java.awt.event.ActionListener() { @Override public void actionPerformed(ActionEvent e) { findAll_actionPerformed(); } }); JButton findNext = new JButton( MessageManager.getString("action.find_next")); findNext.setFont(VERDANA_12); findNext.addActionListener(new java.awt.event.ActionListener() { @Override public void actionPerformed(ActionEvent e) { findNext_actionPerformed(); } }); JPanel actionsPanel = new JPanel(); GridLayout gridLayout1 = new GridLayout(); actionsPanel.setLayout(gridLayout1); gridLayout1.setHgap(0); gridLayout1.setRows(3); gridLayout1.setVgap(2); createFeatures.setEnabled(false); createFeatures.setFont(VERDANA_12); createFeatures.setMargin(new Insets(0, 0, 0, 0)); createFeatures.setText(MessageManager.getString("label.new_feature")); createFeatures.addActionListener(new java.awt.event.ActionListener() { @Override public void actionPerformed(ActionEvent e) { createFeatures_actionPerformed(); } }); searchBox.setFont(new java.awt.Font("Verdana", Font.PLAIN, 12)); ((JTextComponent) searchBox.getEditor().getEditorComponent()) .addCaretListener(new CaretListener() { @Override public void caretUpdate(CaretEvent e) { textfield_caretUpdate(); } }); searchBox.getEditor().getEditorComponent() .addKeyListener(new java.awt.event.KeyAdapter() { @Override public void keyPressed(KeyEvent e) { textfield_keyPressed(e); } }); caseSensitive.setHorizontalAlignment(SwingConstants.LEFT); caseSensitive.setText(MessageManager.getString("label.match_case")); searchDescription .setText(MessageManager.getString("label.include_description")); actionsPanel.add(findNext, null); actionsPanel.add(findAll, null); actionsPanel.add(createFeatures, null); this.add(jLabelFind, java.awt.BorderLayout.WEST); this.add(actionsPanel, java.awt.BorderLayout.EAST); JPanel jPanel2 = new JPanel(); jPanel2.setPreferredSize(new Dimension(10, 1)); JPanel jPanel3 = new JPanel(); jPanel3.setPreferredSize(new Dimension(10, 1)); JPanel jPanel4 = new JPanel(); jPanel4.setLayout(new BorderLayout()); this.add(jPanel2, java.awt.BorderLayout.SOUTH); this.add(jPanel3, java.awt.BorderLayout.NORTH); this.add(jPanel4, java.awt.BorderLayout.CENTER); jPanel4.add(searchBox, java.awt.BorderLayout.NORTH); JPanel optionsPanel = new JPanel(); GridLayout optionsGridLayout = new GridLayout(); optionsGridLayout.setHgap(0); optionsGridLayout.setRows(2); optionsGridLayout.setVgap(2); optionsPanel.setLayout(optionsGridLayout); optionsPanel.add(caseSensitive, null); optionsPanel.add(searchDescription, null); jPanel4.add(optionsPanel, java.awt.BorderLayout.WEST); } protected void textfield_keyPressed(KeyEvent e) { if (e.getKeyCode() == KeyEvent.VK_ENTER) { if (!searchBox.isPopupVisible()) { e.consume(); findNext_actionPerformed(); } } } protected void findNext_actionPerformed() { } protected void findAll_actionPerformed() { } public void createFeatures_actionPerformed() { } public void textfield_caretUpdate() { // disabled as appears to be running a non-functional if (false && searchBox.getUserInput().indexOf(">") > -1) { SwingUtilities.invokeLater(new Runnable() { @Override public void run() { String str = searchBox.getUserInput(); AlignmentI al = null; try { al = new FormatAdapter().readFile(str, DataSourceType.PASTE, FileFormat.Fasta); } catch (Exception ex) { } if (al != null && al.getHeight() > 0) { str = jalview.analysis.AlignSeq.extractGaps( jalview.util.Comparison.GapChars, al.getSequenceAt(0).getSequenceAsString()); // todo and what? set str as searchBox text? } } }); } } /** * Returns unique key used for storing Finder cache items in the cache data * structure * * @return */ public String getCacheKey() { return FINDER_CACHE_KEY; } }