package jalview.json.binding.biojson.v1;

import com.github.reinert.jjschema.Attributes;



public class SequencePojo
{
  @Attributes(required = true, description = "Serial version identifier for the <b>seqs</b> object model")
  private String svid = "1.0";

  @Attributes(required = true,minLength=3,maxLength=1999999999, description = "Sequence residue characters. An aligned sequence may contain <br>one of the following gap characters “.”, “-” or “ ”")
  private String seq;

  @Attributes(required = true, description = "Sequence name")
  private String name;

  @Attributes(required = false, description = "Sequence type", enums = {"DNA", "RNA", "Protein"})
  private String type;

  @Attributes(required = true, description = "Unique identifier for a given Sequence")
  private String id;
  
  @Attributes(required = false, description = "The order/position of a sequence in the alignment space")
  private int order;
  
  @Attributes(required = true, description = "The index of the sequence’s first residue in its source database, <br>using a one-based numbering index system")
  private int start;

  @Attributes(required = true, description = "The index of the sequence’s last residue in its source database, <br>using a one-based numbering index system")
  private int end;


  public SequencePojo()
  {
  }

  public SequencePojo(int start, int end, String id, String name, String seq)
  {
    this.id = id;
    this.name = name;
    this.seq = seq;
  }
  public String getSeq()
  {
    return seq;
  }

  public void setSeq(String seq)
  {
    this.seq = seq;
  }

  public String getName()
  {

    return name;
  }

  public void setName(String name)
  {
    this.name = name;
  }

  public String getId()
  {
    return id;
  }

  public void setId(String id)
  {
    this.id = id;
  }

  public int getStart()
  {
    return start;
  }

  public void setStart(int start)
  {
    this.start = start;
  }

  public int getEnd()
  {
    return end;
  }

  public void setEnd(int end)
  {
    this.end = end;
  }

  public int getOrder()
  {
    return order;
  }

  public void setOrder(int order)
  {
    this.order = order;
  }

  public String getSvid()
  {
    return svid;
  }

  public String getType()
  {
    return type;
  }

  public void setType(String type)
  {
    this.type = type;
  }

}